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location of cellular resp prokaryotes vs eukaryotes
pro - lvl of cell membrane via cytoplasmic membrane
euk - in mitochondria
ways to classify bacteria
biochemical requirements
shape of bacteria
gram stain
spirochete bacteria
treponema, helicobacter, borrelia, campylobacter, leptospora
"the hungry bear catches larvae"
what bacteria have the ability to invade an intact corneal epithelium?
gram pos: listeria (monocytogenes), corynebacterium
gram neg: neisseria gonorrhea, haemophilus influenza
gram neg bacteria
neisseria spp
moraxella launata
moraxella catarrhalis
neisseria gonorrhea
neisseria spp
causes gonococcal conjunctivitis (GC)
neisseria gonnorhea
uses type 4 pili -> IGAse breaks down secretory IgA -> invade intact corneal epithelium
faculatative anaerobic bacteria
strep pyogenes, strep agalactiae, staph aureus
what is an obligate intracellular bacteria that causes rocky mountain spotted fever
rickettsia
gram pos characteristics
- cell wall: thick layer of peptidoglycan -> lipoteichoic acid
- only 1 membrane
- resistant to lysozyme
** no outer membrane, NO LPS
gram neg characteristics
- cell wall: thin layer of peptidoglycan + outer membrane
- 2 membranes
- LPS + porin proteins
- sensitive to lysozyme
** outer membrane anchors LPS to bacterial surface
** porin limits entry of large/hydrophobic molecules
highly virulent encapsulate bacteria
strep pneumoniae
neisseria meningitidis
haemophilus
what bacteria causes membranous or pseudomembranous conjunctivitis
corynebacterium diphtheriae, neisseria gonorrhea, strep pyogenes
importance of mycolic acid
wax like lipid coat, important virulence factor
in mycobacterium
major antibacterial target
30S subunit - tetracycline, aminoglycosides
50S subunit - chloramphenicol, macrolides
chronic infection
continuous production of virus without cell lysis
what is the only bacteria w sterol in the cytoplasmic membrane
mycoplasma
what forms bacterial spores
bacillus and clostridium
bacterial growth curve
lag - inc activity to prepare for replictaion
log - cell division + replication
stationary - end growth
death - rapid cell death
bacterial chromosome
NO nuclear membrane
has haploid membrane
ONLY HAS EXTRONS
3 genetic transfer mechanisms of bacteria
transformation - via integration into recipient cell
transduction - via bacteriophage, infection, integrate DNA
conjugation/transposition - plasmid DNA via sex pilus
what does normal body flora cause
pseudomembranous colitis
** mechnaism: overgrowth of clostridium difficile -> rise in cortisol -> depletes secretory IgA
what produces LPS to mediate endotoxin action
neisseria gonrhhea
endotoxin pathway
LPS attaches to TLR-4 -> induce innate immune response -> production of TNF-a, IL-1, IL-6
** at site of infection, initiates clotting + complement pathways
superantigens
wants to attach itself outside the peptide binding groove -> massive T cell activation + massive cross linking if TCR + MHC II -> massive release of T cells + cytokines
CYTOKINE STORM
how does superantigens lead to hypotension
TNF-a from Th1 cell, APC, IL-1 -> massive vasodilation -> massive vascular leakage -> hypotension
macrophages + NK cells mediate + produce
innate immune response against intracellular bacteria (type 1)
granzyme, perforin, IFN gamma
neutrophils mediate
innate immune response against extracellular bacteria (type 3)
both oxygen dependent and oxygen independent mechanisms
Th1 cells and CD8 T cells mediate
=adaptive immune response against intracellular bacteria (type 1)
Th1 - IFN gamma
CD8 T cells - perforin + granzyme
Th17 cells mediate
adaptive immune response against extracellular bacteria (type 3)
second influx of neutrophils
humoral response to bacteria
IgG and IgA - block attachment of bacteria to host cell receptors
facultative anaerobic bacteria
grows in presence/absence of oxygen
gram positive rod shaped bacteria
aerobic: bacillus, listeria, corynebacterium
anaerobic: clostridium, actinomyces, lactobacillus, propionibacterium
gram positive cocci shaped bacteria
aerobic: staph. aureus, streptococcus, s. pneumoniae, viridans streps, enterococcus, peptostrep
gram negative rod shaped bacteria
aerobic: enterobacteria, vibrio, pseudomonas, burkholderia, stenotrop
anaerobic: bacteriodes (in colon), fusobacterium
gram negative cocci shaped bacteria
aerobic: neisseria, moaxella, brucella, legionella, francisella, borderella haemophilus
anaerobic: veillonella
lactose enzyme test distinguishes...
pathogenic from nonpathogenic enterobacteria
positive = e. coli, klebsiella, enterobacter, serratia, citrobacter
negative = salmonella, shigella, proteus
lancefield strep sprecies
pyogenes, agalactiae, dysgalactiae
what inhibits DNA gyrase and topo 4, essential for bacterial DNA replication
quinolones
which viruses have an RNA genome
hep A, hep D, hep C
bacteria growth mediums support ...
chocolate - haemophilus + neisseria
lowenstein jensen - mycobacteria
Thayer martin - neisseria + gonorrhea (better for neisseria than chocolate
mannitol salt - only for S. aureus (high salt stops mannitol)
MacConkey, EMB - gram neg rods (has lactose)
EMB inhibits gram positive
chemical changes in bacteria growth mediums
MacConkey - lactose makes it red, no lactose makes no color change
EMB - acidic makes it dar purple w green metallic sheen
differentiate neisseria series
N. menigitidis - both maltose and glucose
N. gonnorhea - ferments only glucose
catalase test
positive = bubbles, gas formation (staph)
negative = no bubbles (strep)
coagulase test
positive = precipitate/gel formation (S. aureus)
negative = no gel (S. epidermidis)
kirby bauer assay
evaluate sensitivity of an organism
diameter of growth zone = basis for rating an organism for how resistant/sensitive it is to an antibiotic
sterilants
physical
- steam under pressure - 15-30 min @121-132 deg C
- UV radiation - 30 min kill bacteria, 2 hrs kills bacteria + fungi
gas vapor -> hydrogen peroxide
chemical -> glutaraldehyde
disinfection
destruction of microbes but destroying resilient microbes doesn't reach effective sterilization lvl
viral capsid classification
helical - corona virus
isocahedral - adenovirus, HSV, VZV, HIV
complex - poxvirus
virion shape/size
human DNA (polygonal round)
- smallest: parvovirus (single stranded)
- largest: pox virus
human RNA (rod)
- smallest: picomavirus (cause acute hemorrhagic conj, enterovirus D70, coxsackie virus A24)
- largest: paramyxovirus
characteristics of a non enveloped virus
fecal oral is a common mode of transmission
released from host cell by lysis
resistant to heat/acid/detergent
can survive in the GI tract
macromolecular synthesis
RNA dependent RNA - RNA viruses
RNA dependent DNA - retroviruses (reverse transcriptase, DNA -> proviral DNA)
DNA dependent RNA - retroviruses (proviral DNA -> RNA)
what RNA viruses encode RNA dependent RNA polymerase to generate viral mRNA from neg RNA template
picornavirus, rotavirus
what RNA viruses replicate in the nucleus of the host cell
influenza, HIV, HTLV-1
what has tropism for the liver
hep B
what are growth immunosuppressors
RB110 and p53
** oncogenic virus
Kaposi's sarcome
RNA virus when CD4 T cell count is less than 200
cytopathic/cytopathogenic effects are
structural changes in virus infected host cells
cell fusion (synctia formation) is
fusion of plasma membranes of 4+ virus infected cells to produce enlarged cell w 4+ nuclei (MNGC)
glycoproteins bind to receptors of adjoining cells -> cell-cell fusion
what viruses have DNA replicates in the nucleus of the host cell
parvovirus, adenovirus, HSV
types of viral cytopathogenesis and are they plasmic or nuclear
CMV - both plasmic and nuclear
poxvirus - only plasmic
adenovirus - only nuclear
cowdry type A nuclear inclusions
seen in HSV or VZV
what CPE is typical of most enteroviruses
total destruction of all infected cells -> shrink + become dense (pyknosis)
HBV
releases large amounts of HB surface antigens into the blood -> bind antibodies to form immune complexes
deposition of immune complexes in basement membrane of kidney glomeruli -> renal dysfunction
guillain barre syndrome
demyelinating disease from molecular mimicry
diseases caused by immunosuppression
measles - T cells, B cells, NK cells
HIV - CD4 T cells, DCs, macrophages (Gp120 binds to CD4 and CCR5)
HIV incubation period
very long (1-10 yrs)
factors that promote transmission
- stability of virion in response to environment
- secretion of virus into transmissible modes
- asymptomatic
- ineffective immune response
modes of viral transmission
fecal oral - hep A, hep E
contact - adenovirus
genetic - prions
bodily fluid contact - HIV, HTLV-1, HCV, hep delta, CMV, EBV,
animals - zika (mosquito), hanta (rat), rabies (raccoon)
maternal neonatal - HIV, HTLV-1, CMV, rubella, parvovirus B19, HPV, HSV
high titers of what to prevent reinfection
IgG and IgA - stop cells from accessing another cell
what uses lattices to avoid being taken down
HSV, VZV, retroviruses
prions
neurodegenerative
- long incubation: 30 yrs
- transmission: contaminated surgical device, injection, food, genetic
- can't be taken down by: formaldehyde, protease, heat, ionzing/UV radiation
- have proteins + infectious agenst
- no cytopathologic effect
- do not have nucleic acids
- NEVER induce an immune/inflammatory response or produce interferons (but viruses do!)
what RNA viruses encode RNA dependent RNA polymerase to generate viral mRNA from neg RNA template