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LECTURE 1: INTRO & EVOLUTIONARY THOUGHT
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What is Evolution?
A change in the inherited characteristics of biological populations over successive generations
What is microevolution?
small genetic changes that occur within a species
What is macroevolution?
changes after many generations (e.g. speciation)
Pre-Darwinian Western World View (2)
Stasis
Earth is Young
Stasis (2)
all life forms were created by God exactly as they exist in the present (Christianity)
all life forms can be placed in a hierarchy from simple to complex with humans at the top (Aristotle)
Earth is Young (figure + date)
Archbishop James Ussher (1581-1656) analyzed Genesis and estimated that the earth began Sunday, October 23rd, 4004 B.C.
The Scientific Revolution
Exposure to new plants and animals increased awareness of biological diversity
Erasmus Darwin (1731-1802)
Species have evolved from a common ancestor
Darwins grandfather
Georges Cuvier (1769-1832)
Ends the debate about whether extinction could occur using fossil evidence (begins the long and ongoing study of the Earth’s fossil record)
Jean-Baptiste Lamarck (1744-1829) (2)
Inheritance of acquired characteristics (acquired changes are passed onto offspring)
Lacked mechanism (genetic proof)
Thomas Malthus (1766-1834) (2)
Populations grow exponentially in times of plenty, but eventually are checked by famines, disease, etc.
There will be competition to survive
Charles Lyell (1797-1875) (2)
Developed principle of Uniformitarianism (geological/physical laws of today are directly influenced from the past)
Indicated Earth was very old
Alfred Russel Wallace (1823-1913)
Independently developed idea of natural selection
LECTURE 2: NATURAL SELECTION
2
What were key points in Darwin’s book, Origin of Species? (2)
Species can change
Species evolve from other species through the mechanism of natural selection
From the 3 postulates, individuals compete because __________
resources are finite
From the 3 postulates, individuals vary in ways that affect ___________
their ability to survive (Ii.e. fitness)
From the 3 postulates, some variation is ________
heritable
Competition (3)
Populations can expand indefinitely, but resources are always finite
Individuals compete for limited resources (e.g. food) within a particular habitat
Not all individuals survive long enough to reproduce
Variation (3)
• There is variation among individuals in a population
• Some individuals will possess traits that make them more successful (i.e. higher fitness)
• Those traits allow them to survive and reproduce, or produce more offspring
Traits are Heritable (3)
• Differences among individuals are transferred from parents to offspring
• Those advantageous will become more common in successive generations
• In Darwin’s time, didn’t understand how traits were passed on to offspring (mechanisms of inheritance still
unknown)
Those traits that help individuals to survive and reproduce are called ___________
Adaptation
Adaptation (ANTH 201 Definition)
a trait that is shaped by natural selection and allows the individual to survive and reproduce more successfully (i.e. increases fitness)
Directional Selection
Favours one extreme trait over the other (i.e. faster cheetahs survive, speed increases in offspring over time)
Stabilizing Selection
Favours the average over the extremes, equilibrium (i.e. human birth weight; too fat or too skinny have lower survivability)
Disruptive Selection
Favours both extremes over the average (i.e. birds with very large or very small beaks survive better than birds with medium-sized beaks)
Misunderstandings about evolution & natural selection (4)
Natural selection can’t explain the evolution of complex traits
The unit of selection
All traits are adaptive
Evolution is not ‘progress’
Misunderstanding Explained: Evolution of Complex Traits (2)
• Living gastropod mollusks illustrate all of the intermediate steps between a simple eye cup and a camera-type lens
• Demonstrates each “step” can be an important adaptation
Evolution of Complex Traits (3)
Complex adaptations don’t evolve all at once
Each change, building on previous small changes, can produce complex adaptations
“Tinkering” instead of “engineering”
Complex Traits: Convergence
Unrelated species evolve similar traits due to similar environments and pressures
Example: Sharks (fish) & dolphins (mammals) both have streamlined bodies for swimming
Misunderstanding Explained: The unit of selection (2)
Natural selection occurs at the level of the individual (i.e. a bird with a large beak will survive)
Evolution occurs at the level of the population (changes in gene frequencies, i.e. beak size change over time)
Misunderstanding Explained: All traits are adaptive (3)
Not all traits count as adaptations
It’s only an ‘adaptation’ if it contributes to fitness
Some traits are former adaptations (i.e. the human appendix), and some are just traits (i.e. human chin)
Misunderstanding Explained: Evolution is not a ‘progress’ (2)
Evolution does not always progress in one direction
ONLY better suited to a particular environment (if environment changes, adaptation may be negligible)
Why were Darwin’s theories not accepted at the time? (2)
Could not explain how variation was maintained
Could not explain how traits were passed down – the mechanism of inheritance
Drought reduced seed availability, favoring finches with
deeper beaks
Step-by-Step Evolution of the Eye (5 steps)
Light-sensitive cells → Eye pits → Deeper eye cups → Lenses → Fully functional eye
In what circumstance can evolution be ‘fast’ (a few generations or thousands of years)?
When selective pressures are strong
LECTURE 3: CELLS & DNA
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Blending Inheritance
The hereditary substance of both parents is “mixed” or “blended”
Why couldn’t blending inheritance be the mechanism of inheritance?
Blending inheritance dilutes and eventually eliminates variation
The Cell (3)
Basic unit of life
Generic material and other structures
~ 1 trillion cells in adult human
Prokaryotic Cells (3)
Initial type of cell (3.7 BYA)
Single-celled organisms (bacteria & blue-green algae)
No nucleus
Eukaryotic Cells (3)
Share common ancestor with prokaryotes
Complex (1.2-2.1 BYA)
Have nucleus
Chromosomes (3)
Small linear bodies contained in cell nucleus
Replicated during cell division
Exist in homologous pairs in diploid (2n) organisms
Chromosomes in Humans (2)
23 pairs (n), 46 total (2n)
Two copies of each chromosome (maternal & paternal)
Mitosis (3)
Normal cell division
Creates two exact copies of chromosome pairs (diploid)
Part of normal growth in the body
Meiosis (2)
Cell division for producing gametes
Creates single chromosomes, haploid (n) gamete
What happens during fertilization?
Sperms (n) fertilizes ovum (n)
Following fertilization, what is created?
Zygote (2n)
Zygote divides through _____ to build up new organism
mitosis
Chromosomes contain two complex molecules, which are? (2)
Proteins (histones)
Nucleic Acids (DNA, RNA)
DNA backbone composition
Phosphate and sugar
Inner links between DNA strands are pairs of nucleotides (bases), which are? (4)
Adenine (A)
Guanine (G)
Cytosine (C)
Thymine (T)
To which bases do each nucleotides bond? (2)
A ← → T
G → ← C
DNA is excellent for _____ information
storing
Gene (2)
Segment of DNA that makes a functional product and segregates as a unit during gamete formation
Unit of heredity
Locus
Location on the chromosome where a gene is found
Alleles
Multiples variants of a gene
Differences in DNA Sequence that may cause variation: (2)
Some DNA codes for proteins
Some DNA codes for regulatory sequences
Protein-Coding Genes (2)
Enzymes
Non-enzymatic proteins
Enzymes
Enzymes catalyze (facilitate) chemical reactions in cells, going from one compound to another involved in the structure and function of those cells
Non-enzymatic proteins
Proteins that are not involved in enzymatic reactions, but play a role in the normal structure and function of cells
Codons (2)
3 letter base pairs
Specify amino acids
What do redundant codons protect against?
Deleterious changes in protein structure caused by DNA damage
Synonymous substitution
One base is replaces by another, but it does not change the amino acid for it
Introns
Non-coding sequence in DNA that is removed
Exons
Coding sequence in DNA, spliced together
The same DNA sequence can code for _______________
multiple proteins
Alternative Splicing
exons from the same gene are joined in different combinations (increases variation)
80% of human genes are alternatively spliced
Operators (2)
Determine if & when other protein-coding sequences are expressed
Non-coding but near protein-coding sequence
Binding site: Repressor
Proteins that bind to these sites and block the gene from being expressed (like turning off a light switch)
Binding site: Activator
Proteins that bind and help turn the gene on, allowing it to be expressed (like flipping a light switch on)
Regulatory sequences are a large source of:
phenotypic variation
Gene regulation allows for _____________ from single-cell zygote
Cell differentiation (process where cells specialize into different types with unique functions)
Differential Regulation
Some genes are active in one cell type but inactive in another, leading to variation in function and structure
Mutations
Change in DNA sequence
Point Mutation
change in a single DNA base
Mutations are not always ________
negative (source of variation)
Recombination/Crossing-over (2)
New combinations of alleles through breaking and rejoining of DNA strands into a new order
Meiosis, between homologous chromosomes
LECTURE 4: MENDELIAN GENETICS
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Dominant
Variant of gene that suppresses other variants
Recessive
Genes only expressed when there are two copies of the corresponding allele
Mendel’s Law of Segregation (2)
Alleles account for variation in inherited characteristics
Organism inherits one gene from each parent, and only passes one on
Mendel’s Law of Independent Assortment (2)
Each gene separates independently of each other during meiosis
Emergence of one trait will not affect the likelihood of the emergence of another trait
Homozygous
Both copies of allele are identical
Heterozygous
One dominant allele and one recessive allele
Genotype
Combination of alleles an organism carries (i.e. Aa)
Phenotype
the observable characteristics of an individual (i.e. black fur)
Key Observations from Mendel’s Pea Experiments (3)
Traits are preserved
No blending
Rare traits reappear in later generations
Particulate Inheritance
Traits are determined by discrete particles (genes) passed intact from parents to offspring
What is the expected F2 ratio of a monohybrid cross? (2)
Genotypic Ratio: 1:2:1 (AA:Aa:aa)
Phenotypic Ratio: 3:1 (dominant:recessive)
What is the expected phenotypic F2 ratio of a dihybrid cross?
9:3:3:1
Genetic Linkage
If two or more genes are on the same chromosome, they are usually inherited together (unless crossing over happens)
Linkage ______ the rate of recombination
reduces
Why do identical twins have different fingerprints?
because position in womb impacts finger growth rates in 3rd trimester
How is ABO blood type inherited? (4)
A and B alleles are dominant over O
• AA or AO → A blood type
• BB or BO → B blood type
• OO → O blood type
• A and B alleles are co-dominant (AB blood type)
Why is human eye color more complex than Mendelian traits?
Controlled by multiple genes, mainly OCA2 and HERC2 on Chromosome 15
Same genotypes can result in different phenotypes depending on _______________
Development and environment
LECTURE 5: MODERN SYNTHESIS
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