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Hydrogen bonds
Updated 237d ago
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ENE-1.D = Describe the properties of enzymes. The structure of enzymes includes the active site that specifically interacts with substrate molecules For an enzyme-mediated chemical reaction to occur = the shape & charge of the substrate must be compatible with the active site of the enzyme ENE-1.E = Explain how enzymes affect the rate of biological reactions The structure and function of enzymes contribute to the regulation of biological processes Enzymes are biological catalysts that facilitate chemical reactions (speed up) in cells by lowering the activation energy ENE-1.F = Explain how changes to the structure of an enzyme may affect its function Change to the molecular structure of a component in an enzymatic system may result in a change of the function or efficiency of the system Denaturation of an enzyme occurs when the protein structure is disrupted → eliminating the ability to catalyze reactions Environmental temperatures & pH outside the optimal range for a given enzyme will cause changes to its structure → altering the efficiency with which it catalyzes reactions In some cases, enzyme denaturation is reversible → allowing the enzyme to regain activity ENE-1.G = Explain how the cellular environment affects enzyme activity Environmental pH can alter the efficiency of enzyme activity = including through disruption of hydrogen bonds that provide enzyme structure The relative concentrations of substrates & products determine how efficiently an enzymatic reaction proceeds Higher environmental temperatures increase the speed of movement of molecules in a solution → increasing the frequency of collisions between enzymes & substrates → therefore increasing the rate of reaction Competitive inhibitor molecules can bind reversibly or irreversibly to the active site of the enzyme Noncompetitive inhibitors can bind allosteric sites = changing the activity of the enzyme ENE-1.H = Describe the role of energy in living organisms All living systems require constant input of energy Life requires a highly ordered system & does not violate the second law of thermodynamics Energy input must exceed energy loss to maintain order & to power cellular processes Cellular processes that release energy may be coupled with cellular processes that require energy Loss of order or energy flow results in death Energy-related pathways in biological systems are sequential to allow for a more controlled & efficient transfer of energy A product of a reaction in a metabolic pathway is generally the reactant for the subsequent step in the pathway ENE-1.I = Describe the photosynthetic processes that allow organisms to capture & store energy Organisms capture & store energy for use in biological processes Photosynthesis captures energy from the sun & produces sugars Photosynthesis first evolved in prokaryotic organisms Scientific evidence supports the claim that prokaryotic (cyanobacterial) photosynthesis was responsible for the production of an oxygenated atmosphere Prokaryotic photosynthetic pathways were the foundation of eukaryotic photosynthesis The light-dependent reactions of photosynthesis in eukaryotes = involve a series of coordinated reaction pathways that capture energy present in light to yield ATP & NADPH (power the production of organic molecules) ENE-1.J = Explain how cells capture energy from light & transfer it to biological molecules for storage & use During photosynthesis = chlorophylls absorb energy from light = boosting electrons to a higher energy level in photosystems I & II Photosystems I & II are embedded in the internal membranes of chloroplasts & are connected by the transfer of higher energy electrons through an electron transport chain (ETC) When electrons are transferred between molecules in a sequence of reactions as they pass through the ETC = an electrochemical gradient of protons (hydrogen ions) is established across the internal membrane The formation of the proton gradient is linked to the synthesis of ATP from ADP & inorganic phosphate via ATP synthase The energy captured in the light reactions & transferred to ATP + NADPH = powers the production of carbohydrates from carbon dioxide in the Calvin cycle (which occurs in the stroma of the chloroplast) ENE-1.K = Describe the processes that allow organisms to use energy stored in biological macromolecules Fermentation & cellular respiration = use energy from biological macromolecules to produce ATP Respiration & fermentation = characteristic of all forms of life Cellular respiration in eukaryotes = involves a series of coordinated enzyme-catalyzed reactions that capture energy from biological macromolecules The electron transport chain = transfers energy from electrons in a series of coupled reactions that establish an electrochemical gradient across membranes Electron transport chain reactions = occur in chloroplasts / mitochondria / prokaryotic plasma membranes In cellular respiration = electrons delivered by NADH & FADH2 = passed to a series of electron acceptors (as they move toward the terminal electron acceptor = oxygen) In photosynthesis = the terminal electron acceptor is NADP+ Aerobic prokaryotes = use oxygen as a terminal electron acceptor anaerobic prokaryotes = use other molecules The transfer of electrons = accompanied by the formation of a proton gradient across the inner mitochondrial membrane / the internal membrane of chloroplasts (with the membrane(s) separating a region of high proton concentration from a region of low proton concentration In prokaryotes = the passage of electrons is accompanied by the movement of protons across the plasma membrane. The flow of protons back through membrane-bound ATP synthase by chemiosmosis drives the formation of ATP from ADP & inorganic phosphate known as oxidative phosphorylation in cellular respiration photophosphorylation in photosynthesis In cellular respiration = decoupling oxidative phosphorylation from electron transport generates heat This heat can be used by endothermic organisms to regulate body temperature ENE-1.L = Explain how cells obtain energy from biological macromolecules in order to power cellular functions Glycolysis = a biochemical pathway that releases energy in glucose to form ATP from ADP & inorganic phosphate / NADH from NAD+ /pyruvate Pyruvate = transported from the cytosol to the mitochondrion = where further oxidation occurs In the Krebs cycle = carbon dioxide is released from organic intermediates = ATP is synthesized from ADP + inorganic phosphate & electrons are transferred to the coenzymes NADH + FADH2 Electrons extracted in glycolysis & Krebs cycle reactions = transferred by NADH & FADH2 to the electron transport chain in the inner mitochondrial membranE When electrons are transferred between molecules in a sequence of reactions as they pass through the ETC = an electrochemical gradient of protons (hydrogen ions) across the inner mitochondrial membrane is established Fermentation allows glycolysis to proceed in the absence of oxygen & produces organic molecules (including alcohol & lactic acid = as waste products) The conversion of ATP to ADP = releases energy = which is used to power many metabolic processes SYI-3.A = Explain the connection between variation in the number & types of molecules within cells to the ability of the organism to survive and/or reproduce in different environments. Variation at the molecular level = provides organisms with the ability to respond to a variety of environmental stimuli Variation in the number & types of molecules within cells provides organisms a greater ability to survive and/or reproduce in different environments Kk
Updated 288d ago
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Chapter Summary 2.1 The Importance of Chemistry in Anatomy and Physiology Chemicals are all around us. Household products such as soap and shampoo as well as food and medicine are comprised of chemicals. The human body is also made of chemicals. We begin our examination of anatomy and physiology with a study of basic chemistry. 2.2 Fundamentals of Chemistry Matter is anything that has mass and takes up space. 1. Elements and atoms a. Naturally occurring matter on Earth is composed of ninety-two elements. b. Elements usually combine to form compounds. c. Elements are composed of atoms. d. Atoms of different elements vary in size, weight, and ways of interacting. 2. Atomic structure a. An atom consists of electrons surrounding a nucleus, which has protons and neutrons. The exception is hydrogen, which has only a proton in its nucleus. b. Electrons are negatively charged, protons positively charged, and neutrons uncharged. c. A complete atom is electrically neutral. d. The atomic number of an element is equal to the number of protons in each atom. 3. Isotopes a. Isotopes are atoms with the same atomic number but different mass numbers (due to differing numbers of neutrons). The atomic weight of an element is the average of the mass numbers of its various isotopes. b. All the isotopes of an element react chemically in the same manner. c. Some isotopes are radioactive and release atomic radiation. 4. Molecules and compounds a. Two or more atoms may combine to form a molecule. b. A molecular formula represents the numbers and types of atoms in a molecule. c. If atoms of the same element combine, they produce molecules of that element. d. If atoms of different elements combine, they form molecules called compounds. 2.3 Bonding of Atoms When atoms form links called bonds, they gain, lose, or share electrons. Electrons occupy space in areas called electron shells that encircle an atomic nucleus. Atoms with completely filled outer shells are inert, whereas atoms with incompletely filled outer shells gain, lose, or share electrons and thus become stable. 1. Ionic bonds a. Atoms that lose electrons become positively charged (cations); atoms that gain electrons become negatively charged (anions). b. Ions with opposite charges attract and join by ionic bonds. 2. Atoms that share electrons join by covalent bonds. a. Nonpolar molecules result from an equal sharing of electrons. b. Polar molecules result from an unequal sharing of electrons. c. Hydrogen bonds may form within and between polar molecules. 3. Chemical reactions a. In a chemical reaction, bonds between atoms, ions, or molecules break or form. Starting materials are called reactants; the resulting atoms or molecules are called products. b. Three types of chemical reactions are synthesis, in which large molecules build up from smaller ones; decomposition, in which molecules break down; and exchange reactions, in which parts of two different molecules trade positions. c. Many reactions are reversible. The direction of a reaction depends upon the proportion of reactants and products and the energy available. d. Catalysts (enzymes) influence the rate (not the direction) of the reaction. 2.4 Electrolytes, Acids and Bases, and Salts Compounds that ionize in water are electrolytes. 1. Electrolytes that release hydrogen ions are acids, and those that release hydroxide or other ions that react with hydrogen ions are bases. a. Acids and bases react to form water and electrolytes called salts. 2. Acid and base concentrations a. pH represents the concentration of hydrogen ions (H+) and hydroxide ions (OH−) in a solution. b. A solution with equal numbers of H+ and OH− is neutral and has a pH of 7.0; a solution with more H+ than OH− is acidic (pH less than 7.0); a solution with fewer H+ than OH− is basic (pH greater than 7.0). c. A tenfold difference in hydrogen ion concentration separates each whole number in the pH scale. d. Buffers are chemicals that resist pH change. 2.5 Chemical Constituents of Cells Molecules containing carbon and hydrogen atoms are organic and are usually nonelectrolytes; other molecules are inorganic and are usually electrolytes. 1. Inorganic substances a. Water is the most abundant compound in the body. Many chemical reactions take place in water. Water transports chemicals and heat and helps release excess body heat. b. Oxygen releases energy for metabolic activities from glucose and other molecules. c. Carbon dioxide is produced when certain metabolic processes release energy. d. Inorganic salts provide ions needed in a variety of metabolic processes. e. Electrolytes must be present in certain concentrations inside and outside of cells. 2. Organic substances a. Carbohydrates provide much of the energy cells require and are built of simple sugar molecules. b. Lipids, such as triglycerides (fats), phospholipids, and steroids, supply energy and are used to build cell parts. 1) The building blocks of triglycerides are glycerol and three fatty acids. 2) The building blocks of phospholipids are glycerol, two fatty acids, and a phosphate group. 3) Steroids include rings of carbon atoms and are synthesized in the body from cholesterol. c. Proteins serve as structural materials, energy sources, hormones, cell surface receptors, antibodies, and enzymes that speed chemical reactions without being consumed. 1) The building blocks of proteins are amino acids. 2) Proteins vary in the numbers and types of their constituent amino acids; the sequences of these amino acids; and their three-dimensional structures, or conformations. 3) Primary structure is the amino acid sequence. Secondary structure comes from attractions between amino acids that are close together in the primary structure. Tertiary structure reflects attractions of far-apart amino acids and folds the molecule. The amino acid sequence determines the protein’s conformation. 4) The protein’s conformation determines its function. 5) Exposure to excessive heat, radiation, electricity, or certain chemicals can denature proteins. d. Nucleic acids constitute genes, the instructions that control cell activities, and direct protein synthesis. 1) The two types are RNA and DNA. 2) Nucleic acid building blocks are nucleotides. 3) DNA molecules store information that cell parts use to construct specific proteins. 4) RNA molecules help synthesize proteins. 5) DNA molecules are replicated, and an exact copy of the original cell’s DNA is passed to each of the newly formed cells resulting from cell division.
Updated 336d ago
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