Urea Cycle Defects

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Last updated 2:27 AM on 12/7/25
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11 Terms

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hyperammonemia

  • direct neurotoxicity → encephalopathy

  • stimulation of brainstem breathing centers → respiratory alkalosis

    • low CO2, high pH on a blood gas

  • small molecule, rapidly diffuses across the blood-brain barrier

  • exerts osmotic force → cerebral edema → herniation

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general principles of the urea cycle

  • sources of protein

    • diet (most Americans consume well over the RDA)

    • endogenous recycling: proteins are constantly degraded back to amino acids and used to reconstitute proteins

  • urea cycle is the only major metabolic pathway for detoxifying waste nitrogen formed during protein metabolism

  • occurs in the liver

  • 5-step pathway which results in conversion of 2 molecules of ammonia and 1 of bicarbonate to urea

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neonatal onset of symptoms

  • often within 24 hours of life

  • irritability

  • poor feeding, vomiting

  • lethargy 

  • hypotonia, seizures

  • respiratory distress, apnea

  • liver dysfunction 

    • albumin → edema

    • coagulation proteins → bleeding

    • bilirubin → jaundice, icterus

  • declining mental status

  • coma, death

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later onset of symptoms

  • neuropsychiatric symptoms: hyperactivity, self-injurious behavior, hallucinations

  • protein avoidance

  • developmental delay

  • seizures, stroke, ataxia, vision loss

  • episodic hyperammonemia

    • precipitated by viral illness

    • misdiagnosed as Reyes syndrome

    • vomiting

    • poor growth

  • severe cases result in lethargy, delirium, coma, and death

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carbamoyl phosphate synthetase deficiency 

  • Overview: deficiency of rate-limiting enzyme in urea cycle, most severe urea cycle defect 

  • Gene(s): CPS1

  • Inheritance Pattern: autosomal recessive 

  • Features:

    • testing shows low orotic acid, low citrulline, and low arginine

    • liver enzyme analysis and molecular testing can be used for diagnosis

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ornithine transcarbamylase deficiency 

  • Overview: hyperammonemia, respiratory alkalosis, elevated orotic acid in urine

  • Gene(s): OTC

  • Inheritance Pattern: X-linked dominant

    • Males: neonatal severe, some later onset forms

    • Females: >15% experience symptoms; worse with menstruation and pregnancy; aversion to protein/alcohol, migraines, cyclic vomiting

  • Features:

    • seizures

    • vomiting

    • poor feeding

    • hyperventilation

    • hepatomegaly

  • Later-Onset Forms: high incidence of neuropsychiatric illness

    • crises are precipitated by alcohol use, trauma, Atkins-type diet or bariatric surgery, etc.

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arginosuccinate synthetase deficiency

(citrullinemia type I)

  • Overview: citrullinemia

  • Gene(s): ASS1

  • Inheritance Pattern: autosomal recessive

  • Features: 

    • lethargy 

    • coma

    • seizures

    • vomiting

    • poor feeding

    • hepatomegaly 

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arginosuccinate lyase deficiency

(argininosuccinic aciduria)

  • Overview: elevated arginosuccinic acid in urine

  • Gene(s): ASL

  • Inheritance Pattern: autosomal recessive 

  • Features:

    • lethargy 

    • seizures

    • vomiting

    • poor feeding

    • hyperventilation

    • hepatomegaly 

  • Other: unique disease manifestations unrelated to degree of hyperammonemia

    • neurocognitive deficiencies

    • liver disease

    • trichorrhexis nodosa

    • hypertension 

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trichorrhexis nodosa 

  • coarse, brittle hair

  • Fun Fact: hair is 10.5% arginine by weight

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arginase deficiency

  • Overview: markedly elevated plasma arginine, lactate, and CSF glutamine, and modestly elevated blood ammonia

  • Gene(s): ARG1

  • Inheritance Pattern: autosomal recessive

  • Features:

    • delayed development

    • protein intolerance

    • spasticity

    • loss of muscle control

    • seizures

    • irritability

  • Other: hyperammonemic crises less severe and less commen; unique presentation with spastic paraplegia around 2-3 years, progressive ID, seizures

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treatments for urea cycle defects

  • limit ammonia accumulation

    • limitation of protein intake: balancing with growth and potential for catabolism (metabolic formulas)

    • avoid catabolism (starvation, fever, illness, stress) thus avoid increased protein breakdown

    • avoid hypoglycemia/enhance anabolism

  • replacement of urea cycle intermediates

    • citrulline or arginine

  • increase ammonia removal 

    • ammonia scavenging drugs (sodium benzoate, glycerol, or sodium phenylbutyrate)

    • hemodialysis

    • liver transplantation