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presence of microbes that live and grow in/on host without disease
colonization
a condition in which pathogenic microorganisms penetrate host defenses, enter the tissues, and multiply
infection
any deviation from health
disease
factors that cause disease:
infections/genetics/aging/malfunctions of systems or organs
disruption of tissues or organs caused by microbes or their products
infectious disease
large and diverse collection of microbe living on and in the body
human microbiome
other names for human microbiome
resident or indigenous biota or normal flora
include an array of bacteria, fungi, protozoa, and viruses
human microbiome
differences in gut microbiome have preliminary been associated with differences in the risk for what?
crohns disease
obesity
diabetes
asthma
heart disease
mental health
the makeup of your ____ can influence many facets of your overall health
biota
traditional sites of microbiota
skin & adjacent mucous membranes
upper respiratory tract
gastrointestinal tract
outer portion of urethra
external genitalia
vagina
external ear canal
external eye
newly described sites of microbiota
lungs
bladder
breast milk
amniotic fluid and fetus
sites in which DNA from microbiota has been detected:
brain
bloodstream
an international collaboration aimed to characterized the microbiome in health and disease
Human microbiome project
current understanding is that fetuses are seeded with normal microbiota in ___
utero
during birth - baby becomes colonized with mothers ______ ?
vaginal biota
during breast feeding - breast milk contains around _______?
600 species of bacteria
contains sugars that babies cannot digest, but are used by healthy gut bacteria
breast milk
may be necessary for maintaining a healthy gut microbiome in the baby
breast milk
benefits of normal biota:
influence the development of organs
prevent overgrowth of harmful microorganisms
the general antagonistic effect “good” microbes have against intruder microorganisms
microbial antagonism
microbes in a steady, established relationship are unlikely to be displaced by incoming microbes
microbial antagonism
a microbe whose relationship with its host is parasitic
pathogen
results in infection and disease
pathogen
capable of causing disease in healthy persons with normal immune systems
true pathogens
cause disease when the hosts defenses are compromised
opportunistic pathogen
cause disease when they become established in a part of the body that is not their natural habitat
opportunistic pathogen
majority of infections are ______ with contributions from more than one microbe
polymicrobial
example of polymicrobial infection
influenza infection frequently leads to bacterial pneumonia
factors that weaken host defenses & increases susceptibility to infection
old age & extreme youth
genetic defects in immunity
surgery ad organ transplants
underlying disease
chemotherapy/immunosuppressive drugs
physical and mental stress
pregnancy
degree of pathogenicity
virulence
indicated by a microbes ability to establish itself in the host and cause damage
virulence
any characteristic or structure of the microbe that helps it successfully infect its host, often associated with increased disease
virulence factor
a minimum number of microbes required for an infection to proceed
infectious dose
determined experimentally for many microbes
infectious dose
microbes with a smaller infectious dose have ____?
greater virulence
steps involved when a microbe causes disease in a host
finding portal of entry
attaching & negotiating the microbiome
surviving host defenses
causing damage
exiting host
a characteristic route taken by a microbe to initiate infection
portal of entry
originating from outside the body (the environment, another person, animal)
exogenous portal of entry
already existing on or in the body (normal biota or previous silent infection)
endogenous portal of entry
very tough barrier that few microbes can penetrate, requires breakage (abrasions, nicks/cuts, bug/animal bites)
skin
entry via ingested substances, pathogen has to withstand digesting enzymes and pH changes
GI tract
continuous mucus membranes cover upper respiratory tract, sinuses, auditory tubes - microbes can transfer from one site to another
respiratory tract
pathogen usually transmitted via sexual contact
urogenital
an exchange organ
placenta
formed by maternal and fetal tissues
placenta
separates the blood of developing fetus from that of the mother
placenta
permits diffusion of dissolved nutrients and gases to the fetus
placenta
a few pathogenic microbes cross the placenta and are spread by the ______ into the fetal tissues
umbilical vein
other infections during pregnancy and birth are transmitted _____ as the child passes through the birth canal
perinatally
a process by which microbes gain a more stable foothold on host tissues
adhesion
dependent on binding specific molecules on both the host and pathogen
adhesion
examples of adhesion
fimbriae on bacteria
spike proteins on viruses
a particular pathogen is _____ to only those cells and organisms to which it can bind
limited
all successful pathogens have virulence factors that help them avoid the _______
immune response
act as a shield allowing evasion from phagocytes and preventing attachment of immune proteins
capsules
genetic variation in surface proteins makes it hard for the immune system to recognize the pathoegn
antigenic variation
some target immune cells such as phagocytes, others interfere with immune signaling
toxins
viruses, and bacteria/parasites that replicate in cells are partially hidden from the immune system
intracellular survival
examples of virulence factors that help survive host defenses
capsules
antigenic variation
toxins
intracellular survival
direct damage by enzymes and toxins
disease
secreted by pathogenic bacteria, fungi, protozoa, and worms
exoenzymes
break down and inflict damage on tissues
exoenzymes
dissolve host defense barriers and promote the spread of microbes into deeper tissues
exoenzymes
examples of exoenzymes
mucinase
keratinase
hylaronidase
a specific chemical product of microbes, plants, and some animals that is poisonous to other organisms
exotoxin
not actively secreted, but shed from outer membrane of gram-negative bacteria
endotoxin
inducing an injurious host response
causing disease
many cases of microbial diseases are the result of indirect damage or the ____________ to a microorganism
hosts excessive or inappropriate response
a trait not solely determined by microorganisms
pathogenicity
pathogenicity is a consequence of an interplay between ____ & ____
microbe & host
specific avenue by which pathogens exit
portal of exit
how do microbes exit the host
shed through:
secretion
excretion
discharge
sloughed tissue
if there is a high number of microbes in materials like secretions, excretions, discharge, or sloughed tissue it increases the likelihood that the pathogen will reach other ____
hosts
microbe enters the body and remains confined to a specific tissue
skin conditions, ex. warts, boils
upper respiratory infections, colds
localized infections
infectious agent spreads from a local site and is carried to other tissues
ex. periodontal infections leading to cardiovascular consequences
focal infection
when an infection spreads to several sites and tissue fluids, usually in the bloodstream
systemic infection
measles, rubella, chickenpox, HIV
viral systemic infection
brucellosis, anthrax, typhoid fever, syphilis
bacterial systemic infection
histoplasmosis, cryptococcosis
fungal systemic infection
infectious agents can also travel by means of ____ (rabies) or _______ (meningitis)
nerves, cerebrospinal fluid
come on rapidly & have short-lived effects
acute infections
progress and persist over a long period of time
chronic infections
host is infected but does not manifest the disease
asymptomatic, subclinical, or inapparent infections
a dormant state of an infectious agent
latency
most infections are attended by some sort of ____
sign
the microbe can periodically become active and produce a recurrent disease, cycling in and out of _______
latency
long-term or permanent damage to organs and tissues
sequelae
ex. of diseases that can enter into latent stages
HSV-1
chicken pox/shingles
tuberculosis
malaria
ex. of diseases that can cause sequelae
meningitis → deafness
strep throat → rheumatic heart disease
lyme → arthritis
polio → paralysis
objective evidence of disease as noted by an observer
sign
subjective evidence of disease as sensed by the patient
symptom
a disease identified by a certain complex of signs and symptoms
syndrome
no noticeable symptoms are produced
silent infections
microbe is active in host tissues
host does not seek medical attention
known as asymptomatic, or subclinical
silent infection
the time from initial contact with the infectious agent to the appearance of first symptoms
incubation period
when the earliest notable symptoms of infection appear
prodromal period
infectious agent multiplies at high levels, exhibits its greatest virulence, and becomes well established in its target tissues
acute phase
patient responds to infection and symptoms decline
convalescent stage
either the organism lingers for months, years, or indefinitely after the patient is well or the organism is gone but symptoms continue (only some infections have this phase)
continuation period