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signs
measurable by clinician
ex.) fever
symptom
unmeasurable by clinician
ex.) stomach ache
syndrome
group of signs and symptoms to determine a disease
infectious
disease with direct effect of pathogen
communicable (contagious)
disease spreading person-to-person
latrogenic
disease from medical procedure
WHO’s international classification of diseases (ICD)
globally use org for diseases
nosocomial
disease from hospital setting
zoonotic
disease from animal
non-communicable
disease from non-living thing
ex.) soil or contaminated object
non-infectious
disease not from pathogen
ex.) genetics
communicable example
malaria:
infectious
zoonotic
non-communicable
sickle cell anemia:
non-infectious (genetic)
disease stages
incubation
prodromal
illness
decline
convalescence
incubation
replication begin
prodromal
host show sign & symptoms
illness
sign & symptom most severe in host
decline
pathogen start decrease
host immune system weak & vulnerable to 2nd infection
convalescence
host start recover
when can patients be contagious
all stages
acute disease
short
ex.) hours, week, day, flu
chronic disease
longer
ex.) months, years, lifetime, hepatitus
latent disease
come in episodes
pathogen replicate when disease active
ex.) chicken pox, herpes
robert koch wrong assumptions
pathogen found ONLY in disease individual
all subject equal susceptible to infection (different immune system)
all pathogen can be grown in culture
pathogenicity
ability of pathogen to cause disease
virulence
degree of pathogenicity
high virulent
bacillus anthracis induce severe sign & symptom
low virulent
rhinovirus induce low sign & symptom
median infectious dose (ID50)
infect 50% of inoculated
median lethal dose (LD50)
kill 50% of infected
primary pathogen
cause disease regardless of host microbiota or immune system
ex.) enterohemorrhagic e. coli
opportunistic pathogen
only cause disease that compromise host defense
ex.) immune system, protective barriers, normal microbiota
pathogenicity stages
exposure
adhesion
invasion
infection
transmission
exposure
pathogen exposed to portals of entry
mucosa portal worse portal
TORCH infections
pathogen that cross placental barrier as portal entry
adhesion
molecules/structures bind to host receptors
ex.) biofilm production of glycocalyx
invasion
colonization established
pathogen produce toxin to colonize body/tissue from immune system
ex.) helicobacter pylori urease production
effector protein
secreted to trigger entry
ex.) salmonella & shigella
surface protein
allow binding to host cell (trojan horse approach
local infection
small area of body
focal infeciton
pathogen spreads to secondary location
systemic infection
occurs throughtout body
ex.) septicemia
primary infection
can lead to secondary infection of different pathogen
transmission
requires new host through portal of exit
virulence factors
pathogen product that helps cause infection & disease
adhesins
protein that aid attachment to host receptors
bacteremia
bacteria in blood
viremia
viruses in blood
toxemia
toxins in blood
septicemia
bacteria present & multiplying in blood
can lead to septic shock
exoenzymes
extracellular enzyme use to invade host tissue
ex.) glycohydrolases, nucleases, phospholipases, proteases
glycohydrolases
degrades hyaluronic acid to promote spreading in tissue
ex.) hyaluronidase S in staphylococcus aureus
nucleases
degrade DNA by dying cells to trap bacteria
ex.) DNAse produced by s aureus
phospholipases
degrade phospholipid bilayer to cause cellular lysis
degrade membrane of phagosomes to escape in cytoplasm
ex.) phospholipase C to Bacillus anthracis
proteases
degrade collagen in connective tissue to promote spread
ex.) collagenase in Clostridium perfringens
endotoxins
lipopolysaccharides trigger host inflammatory response
cause fever & shock
exotoxins
protein produce Gram-positive
target receptor on specific cell
ELISA
use antibody to detect endotoxin
limulus amebocyte lysate (LAL)
test blood cell of horseshoe crab mixed with patient serum
intracellular targeting
a region - activity
b region - binding
membrane disrupting
phospholipases degrade bilayer membrane
ex.) bacillus anthracis & rickettsia
hemolysins & leukocidins
target RBC, WBC and other cells
superantigen
excessive production of cytokines by immune cell
ex.) s. aureus & toxic shock syndrome
host evasion
mechanism to evade phagocytosis
ex.) capsule enlarge bacteria cell
protease digest host antibody
antigenic drift
slight change in spike protein
one change
antigenic shift
major change in spike protein
gen arassortment
mycotoxins (virulence fungi)
produce by claviceps purpurea & aspergillus to contaminate grains & staple crops
ex.) corn
virulence protozoans
adhesins, toxins, antigenic variation
giardia lamblia use adhesive disk
microtubules attach intestines
plasmodium falciparum change protein for RBC, cause chronicity in malaria patients
virulence helminths
tissue penetration w/ proteases
roundworm produce cuticle to last longer against host
glycan gimmickry (helminth)
mimic host cell to evade immune system
schistosoma mansoni (helminth)
degrade host antibody to halt immune defense
etiology
study of cause of disease
epidemiology
study distribution & timing of disease
morbidity
number of individuals w/ disease
mortality
number of death from death
prevalence
total individual
incidence
new cases
sporadic
occasional w/o regional concentration
ex.) tetanus, rabies, plague
endemic
present in certain region
ex.) malaria, ebola, chicken pox
epidemic
large amount of cases
ex.) influenza, west nile
pandemic
epidemic that is cross continental
ex.) virulent influenza, ebola
CDC
publish morbidity & mortality weekly report (MMWR)
john snow
father of epidemiology
studied contaminated water pump in london for cholera
common source
single source for all infected people
ex.) broad street water pump
point source
common source for short time
ex.) potato salad
continuous source
continuous contamination
ex.) sewage from up stream
intermittent source
on & off contamination
ex.) rainfall runoff
propagated
direct/indirect person-to-person contact
ex.) no single source
florence nightingale
war nurse kept records of soldier illness & death
joseph lister
kept epidemiology data of hand washing for healthcare practices
used carbolic acid (phenol) to disinfect hands
observational study
not manipulated
ex.) descriptive, analytical, cohort method, case-control, cross-sectional
experimental study
manipulated
ex.) clinical trials
usually double-blind study
ethical concern
descriptive study
gather info on disease outbreak
analytical study
evaluate hypothesis
can be retrospective or prospective
retrospective study
data from past
prospective study
data from current group
through course of study
cohort method study
examine people who share similar characteristic
ex.) prospective/retrospective
case-control study
compare group w/ disease to group w/o
retrospective study
cross-sectional study
group randomly selected to compare disease & no disease
reservoir
long persisting pathogen