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Lipases
break triglycerides down into glycerol and fatty acids
Triglyceride makeup
glycerol molecule with 3 fatty acids
Glycerol makeup
carbon chain attached to hydrogen atoms and OH groups
Fatty acid makeup
carbon chain attached to hydrogen atoms and OH groups
Beta-oxidation
breaks down fatty acids 2 carbons at a time and releases energy
Proteases
break down proteins into amino acids
2 functions of amino acids (besides forming proteins)
Conversion to citric acid cycle intermediates
Conversion to acetyl-CoA (or other amino acids)
In what 3 ways an amino acids be converted to acetyl-CoA (or other amino acids)?
Transamination: moves amino groups
Decarboxylation: removes carboxylic acid
Desulfurization: removes sulfur group (if applicable) from amino acid
Amino acid structure
amino group (NH3), hydrogen, central carbon, carboxylic acid, and R group
How many R groups exist?
There are 20 R groups, resulting in 20 unique amino acids
Photosynthesis process
Conversion of light energy to chemical energy
Chemical energy is then used to fix carbon into molecules that can be used for cellular respiration
Do photosynthetic organisms have mitochondria, chloroplasts, or both?
Both
Phototrophs
photosynthetic organisms that create their energy from sunlight
Chemotrophs
use organic (and sometimes inorganic) chemicals to create energy
Autotrophs
get their carbon from carbon dioxide (inorganic)
Heterotrophs
get their carbon from organic molecules (i.e. carbohydrates)
Photoautotrophs
get their energy from photophosphorylation and get their carbon from carbon dioxide
Photoheterotrophs
get their energy from photophosphorylation and get their carbon from organic molecules
Chemoautotrophs
get their energy from inorganic compounds and get their carbon from carbon dioxide
Chemoheterotrophs
get their energy and carbon from organic molecules
Microbial growth
increase in a microbial population
3 requirements for microbial growth
Temperature
pH
Osmotic environment
3 types of organisms (in relation to temperature preferences)
Psychrophiles
Mesophiles
Thermophiles
Psychrophiles
cold-loving
Mesophiles
prefer a moderate environment (37ºC)
Thermophiles
heat-loving
3 types of growth temperatures for microorganisms
Minimum growth temperature
Optimal growth temperature
Maximum growth temperature
2 types of organisms (in relation to pH preferences)
Acidophiles
Alkalophiles
Acidophiles
prefer low pH
Alkalophiles
prefer high pH
For most bacteria, optimal pH falls between _____ and _____
6.5, 7.5
Do fungi have a slightly lower or slightly higher optimal pH than bacteria?
Lower
Plasmolysis
shriveling up of a bacteria cell in a hypertonic solution
Halophile
prefers hypertonic environments
5 chemical requirements for all living organisms
Carbon source
Nitrogen source
Phosphorus source
Sulfur source
Certain oxygen requirements
2 ways that nitrogen can be acquired by microorganisms
For protein and nucleic acid synthesis
Nitrogen can be acquired from breaking down proteins or fixing atmospheric nitrogen
2 uses of phosphorus in microorganisms
Nucleic acids
ATP
2 uses of sulfur in microorganisms
Many amino acids (like sulfur)
Vitamins
5 types of organisms (in relation to oxygen requirements)
Obligate aerobe
Facultative anaerobe
Obligate anaerobe
Aerotolerant anaerobe
Microaerophiles
Obligate aerobe
have an absolute need for oxygen
Facultative anaerobe
prefer oxygen, but can survive in absence of oxygen
Obligate anaerobe
cannot survive in the presence of oxygen
Aerotolerant anaerobe
prefer a lack of oxygen, but can survive in the presence of oxygen
Microaerophiles
low oxygen requirement
When can oxygen be poisonous?
If certain enzymes are not present
3 enzymes that ensure that oxygen is not poisonous
Superoxide dismutase
Catalase
Peroxidase
Superoxide dismutase function (and chemical equation)
converts oxidants into oxygen and hydrogen peroxide (2O-2 + 2H+ → O2 + H2O2)
Catalase and peroxidase function (and chemical equation)
converts hydrogen peroxide into water (H2O2 + 2H+ → 2H2O)
Biofilms
made of extracellular matrix and allows bacteria to live in communities on different surfaces
3 functions of biofilms
Allows adherence to surfaces
Protection from dessication (drying out)
Resistance to antibiotics
5 types of media
Chemically defined media
Complex media
Reducing media
Selective media
Differential media
Chemically defined media
exact chemical composition of the media is known
Chemically defined media function
Typically used to grow autotrophs
Complex media
exact chemical composition can vary slightly, but researchers still know the constituents
Reducing media
reduces or removes molecular oxygen from the media in conjunction with an anaerobic jar/chamber
Reducing media function
Typically used to grow obligate or facultative anaerobes
Selective media
allows for the growth of only desired microbes
Example of selective media use
gram negative bacteria will grow, but gram positive bacteria will not
Differential media
distinguishes different organisms
Example of differential media
MacConkey agar differentiates between E. Coli and salmonella
What must parasites and viruses be cultured in?
In a cell culture (not on a plate) or in living animals
Example of a bacteria that can be grown in a cell culture
Mycobacterium leprae
Capnophiles
organisms that require high carbon dioxide requirement
How are capnophiles cultured?
CO2 incubator or candle jar (burning of the candle releases CO2)
Binary fission causes what type of bacterial growth?
Logarithmic
How can the growth of bacteria be plotted?
# of cells vs. time
4 phases of bacteria growth
Lab phase
Logarithmic phase
Stationary phase
Death phase
Lab phase of bacterial growth
no growth but metabolic activity is high
Logarithmic phase of bacteria growth
bacteria multiply at their fastest rate and metabolic activity is high
Stationary phase of bacterial growth
growth rate is equal to death
Death phase of bacterial growth
carrying capacity has been reached, so death exceeds growth