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What is soil?
Soil is a mixture of minerals, dead and living organisms, organic materials, air and water.
What ecosystem services do soils perform?
Provisioning
e.g. provide food, medicine, water.
Regulating
e.g. processes that purify water, decompose wastes, control pests, or modify atmospheric gases.
Supportive
e.g. assisting with nutrient cycling, seed dispersal, primary biomass production.
Cultural
e.g. providing spiritual uplift, scenic views, and outdoor recreation opportunities.
What are the key functions of soil?
Supports plant growth
Regulates water supplies
Controls exchanges of gas and heat
Acts as habitat
Acts as an engineering medium
Acts as a recycling system
What are the three soil phases?
Solid phase
Mineral phase
Liquid phase
Gaseous phase
What is the solid phase of soil?
The solid phase consists of mineral particles, organic matter (plant roots and residue), and soil microorganisms that provide structure and nutrients necessary for plant growth.
*also carbonaceous remains and stable end products of decomposition
What is the liquid phase of soil?
The liquid phase (soil solution) consists of water and dissolved nutrients, which are essential for plant uptake, respiration and biochemical processes within the soil.
Soil water is held within pores where the attraction between water and the surfaces of soil particles greatly restricts ability of water flow.
Soil saturation
Occurs when all the pore spaces within the soil are filled with water, leaving no room for air.
Field capacity
The amount of soil moisture or water content held in soil after excess water has drained away and the rate of downward movement has materially decreased, which usually takes place within 2–3 days after a rain or irrigation in previous soils of uniform structure and texture.
Permanent wilting point
May be defined as the amount of water per unit weight or per unit soil bulk volume in the soil, expressed in percent, that is held so tightly by the soil matrix that roots cannot absorb this water and a plant will wilt.
What problems arise when a soil contains too much water?
Water logging (induces anoxic conditions)
Root rot
Rapid contaminant dispersion
Leaching of minerals and nutrients
What is the gaseous phase of soil?
The gaseous phase is dependent on the soil pore system and contains gases such as N2, O2, and CO2. O2 is critical for plant roots and microbial respiration.
This phase has an inverse relationship with the liquid phase (as gas ↑ liquid ↓).
How do plants obtain nutrients?
To be taken by a plant, the nutrient element must be in a soluble form and must be located at the root surface. There are three principle mechanisms of nutrient uptake. All three mechanisms may operate simultaneously but one mechanism or another may be most important for a particular nutrient.
What are the three principle mechanisms of nutrient uptake?
Root interception - growth of (root hairs) into new area
Mass flow – dissolved nutrient carried with water
Diffusion – concentration gradient
How do soils form?
Soil formation is stimulated by climate and living organisms acting on parent materials over periods of time and under the modifying influence of topography.
e.g. bare rock and deposited material after landslides, floods, eruptions and retreated glaciers
What are the major environmental factors that control soil formation?
Climate (cl)
Organisms (o)
Relief or topography (r)
Parent materials (p)
Time (t)
*Si = f × (cl,o,r,p,t)
Climate (as a soil forming factor)
Affects the rates of chemical, physical, and biological processes through:
Effective precipitation (rainfall)
Temperature
Seasonal rainfall distribution, evaporative demand, site topography and soil permeability interact to determine how effectively precipitation can influence soil formation
For every 10°C rise in temp, the rate of biochemical reactions double
Temperature and moisture influence SOM content by affecting the balance between plant growth and microbial decomposition
Organism ( as a soil formation factor)
Organic matter accumulation, biochemical weathering, profile mixing, nutrient cycling, and aggregate stability are all enhanced by the activities of organisms in the soil
They comprise of vegetation, macro- and meso-fauna and microorganisms
Organisms act by physical alteration, chemical alteration/carbon addition, and translocation of soil particles
In natural vegetation, cation cycling by trees and heterogeneity in rangelands (grasslands, shrublands, woodlands, wetlands and deserts) alter soil formation
Invertebrates impact soil structure and particle rearrangement by building channels in the soil, building structure and porosity as well as redistributing minerals
Human influence is considered the sixth factor in soil formation due to land use change, land management, land degradation, soil sealing (roads) and mining
Relief (as a soil formation factor)
Refers to the configuration of the land surface
Topography governs and is shaped by water movement
The landscape controls the deposition and accumulation of material and soil profile layering and depth
e.g. shallow profile and deep soil profile
Parent material (as a soil formation factor)
Igneous – solidification of molten material (magmatic origin)
e.g. granite, basalt
Sedimentary – solidified deposited material
e.g. limestone, shale, sandstone
Metamorphic – igneous or sedimentary material altered by heat and pressure
e.g. marble, gneiss, slate and quartz
Differ in hardness and susceptibility to weathering
Time (as a soil formation factor)
Soil-forming processes take time
The weathering of rock generally creates 0.01-0.1 mm of new soil per year
The rock weathering into soil material tend to be greatest for the thinnest soils on steep slopes and rates as high 2 mm/year have been measured on steep mountains in high rainfall tropical areas
Weathering
A biochemical process that involves both destruction and synthesis. The original rocks and minerals are destroyed by both physical disintegration and chemical decomposition.
Physical weathering
Influenced by temperature, abrasion by water, ice and wind, and plant and animals
Factors of biochemical weathering
Hydration
water molecules may bind to minerals in soil
Hydrolysis
water molecules split into their hydrogen and hydroxyl components
the hydrogen often replaces a cation from the mineral structure
Dissolution
water is capable of dissolving many minerals by hydrating the cations and anions until they become dissociated from each other
Acid reactions
weathering is accelerated by the presence of acids, which increase the activity of hydrogen ions in water
Oxidation-reduction
occurring mostly in minerals that contain iron, manganese, or sulfur
Complexion
formation of organic complexes (e.g. metals with humic acid)
What are the four basic processes of soil formation?
Transformations
occur when soil constituents are chemically or physically modified or destroyed, and others are synthesized from the precursor materials
Translocations
involve the movement of inorganic and organic materials laterally within a horizon or vertically from one horizon up or down to another
Additions
inputs of materials to the developing soil profile from outside sources
Losses
materials lost from the soil profile by leaching to groundwater, erosion of surface materials and volatilisation of gases
What are the main soil forming factors in Australia?
The main factors are wind and water. Other factors include:
Physical weathering
freeze and thaw (temperature), eluviation/illuviation of clay (movement), abrasion, fragmentation.
Chemical weathering
dissolution/precipitation, salinisation, leaching, calcification/decalcification, podsolisation.
Biological weathering
e.g. termites, ants, earthworms, burrowing animals.
The master horizons and layers
Six master soil horizons are commonly recognised and are designated using the capital letters O, A, E, B, C, and R.
Upper layers have been changed the most, while the deepest layers are most similar to the original regolith (soil’s original parent material).
O horizons
Organic horizons that generally form above the mineral soil or occur in an organic soil profile
Derived from dead plant and decomposed animal residues
O horizons occur in forested areas
Generally absent in grassland regions
A horizons
The topmost mineral horizons, generally contain enough partially decomposed organic matter to give the soil a colour darker than that of lower horizons.
In medium-textured soils, A horizons are often coarser in texture having lost some of the finer materials by translocation to lower horizons and by erosion.
E horizons
Zones of maximum leaching or eluviation of clay, iron, and aluminum oxides, which leaves a concentration of resistant minerals (such as quartz) in sand and silt sizes.
E horizon is usually lighter in colour
Quite common in soils developed under forests
They rarely occur in soils developed under grasslands
B horizons
Layer where materials have accumulated, typically translation or leaching from the horizons above.
In humid regions, B horizons are the layers of maximum accumulation of materials such as iron and aluminum oxides and silicate clays (Bt)
In arid and semiarid regions, calcium carbonate or calcium sulfate may accumulate
C horizons
Unconsolidated material underlying the solum (A and B horizons), below zones of biological activity and has not been sufficiently altered by soil forming processes.
In dry regions, carbonate and gypsum may be concentrated in the C horizon.
R horizon
Layer comprised of consolidated rock, with little evidence of weathering.
What characteristics allow us to identify soil layers?
Soil (matrix) colour
Redoximorphic features
Texture
Coarse fragments
Artefacts
Bulk density
Structure
Coatings and bridges
Cracks
Carbonates
Secondary carbonates
Secondary gypsum
Secondary silica
Cementation
Water saturation
Volcanic glasses
Corg content
Human alterations
Anthroposol (soils resulting from human activities)
Formed by modification, mixing, truncation or burial of the original soil or creation of new parent material.
Anthropic material must be > 0.3 m thick
Identified by the presence of artefacts
Sealed and semi-sealed surfaces are regarded as ‘non-soil’ (urban soils)
e.g. streets, roads etc.
Organosol (organic soils)
Dominated by organic matter, humus or peats.
Colder and wetter climates cause less oxidation and decomposition of organic matter resulting in peat swamps
Mainly southern Tasmania (uncommon in Australia).
Podosol (organic materials and aluminium, with or without iron)
Characterised as B horizons dominated by the accumulation of organic matter (Bh), sesquioxides (Al/Fe) (Bs) or both (Bhs).
Bleached and sandy lower A horizon
Mostly very permeable
Low fertility, poor water retention, waterlogging (some forms)
Requires vegetation (tree) cover
Occurring in humid high rainfall areas.
Vertosol (shrink and swell clay soils)
Clay soils that shrink and swell, and crack when dry, derived from basalt or alluvial deposits.
Good water holding capacity and fertility
Self mulching
Difficult to manage
High sodium in some cases
Excessive saturation and cracking can be a problem during storm season
Limited to medium-low rainfall areas (around 600 mm)
Occurring in Queensland.
Hydrosol (wet soils)
Soils that are seasonally or permanently saturated with water for at least 2-3 months in most years.
May or may not experience reduced conditions (indicated by grey/mottles) due to waterlogging or high groundwater table
Occurring in depressions and low-lying plains
Mangrove swamps are borderline organosol or hydrosol.
Kurosol (acid soils with an abrupt increase in clay)
Duplex soils with a distinct texture contrast between A and B horizons due to high amounts of leaching.
B horizon acidic (pH < 5.5)
B horizon may be high in magnesium (magnesic), sodium (sodic) or aluminium
Vegetation ranges from eucalypt woodland to forest (rainfall dependent).
Occurring in high rainfall regions.
Sodosol (high sodium soils, abrupt increase in clay)
Soils that are sodic (high sodium content) and have a strong texture contrast between A and B horizon.
B horizon is sodic and clayey (dispersive and unstable)
B horizon not acidic
Low agricultural potential due to poor structure, reduced permeability, and increased erodibility
Mostly occurring in dry arid regions
Occurring in Victoria.
Chromosol (abrupt increase in clay)
Soil with a strong texture contrast between A horizons and B horizons, where the subsoil is clayey and neither acidic or sodic.
Can be brightly coloured
May have low internal drainage (due to clay content)
Red Chromosol occurring in NSW, Yellow Chromosol occurring in WA.
Calcarosol (soils with calcium carbonate)
Soil with a high composition of calcium carbonate (lime or CaCO3) in all or part of profile with gradual clay content with depth.
Shallow, low water retention, and wind erosion in sandier types
High salinity, alkalinity and sodicity may be a problem (damaged soil structure)
Limited to low rainfall, arid areas
Occurring in SA.
Ferrosol (iron rich soils)
Soils that are rich in iron (>5% Fe in B horizon) and well-structured.
May be degraded by erosion and compaction caused by tillage practices, may suffer from acidification
Deep and well-drained, rapid infiltration and water movement
Good agricultural soil.
Dermosol (structured soils)
Soils with a negligible texture contrast between A and B horizons but a well-developed soil structure in the subsoil.
Clay skins on peds
Moderate to high fertility
Moderately deep and well drained (due to peds) in wetter regions.
Kandosol (Structureless soils)
Soils with a negligible texture contrast between A and B horizons with a weakly structured subsoil (not many aggregates forming, mainly single grain soil).
Susceptible to crusting and hardening of soil surface
May be brown, yellow or red
Most have low fertility (grazing and native pastures)
Occurring in NT.
Arenosol
Soils with a sandy texture.
Deep sands (quartz)
<15% clay
Single grained
Occurring in WA.
Rudosol (minimal soil development)
Soils with minimal pedological development (no profile development beyond the surface layer).
Young soils (e.g. sediments)
Can vary widely in terms of texture and depth
e.g. shallow or stony
Often stratified or highly saline
Low fertility and water-holding capacity
Occurring in in desert and arid regions.
Tenosol (weakly developed soils)
Soils with weak pedological development (more subsoil development than rudosols).
Low fertility and water holding capacity.
What is the importance of soil organic matter?
Adds soil moisture content
Facilitates soil structure and compaction
Contributes to soil nutrient status
Facilitates cation exchange capacity
Facilitates biological activity and energy storage
Effect of soil organic matter on soil structure
Aggregate stability
Promotes the formation of stable soil aggregates
Compaction
Particulate organic matter helps resist compaction
Erosion
Aggregate stability helps reduce erosion
Crusting
Helps reduce preconditions to crust formation (i.e. erosion and aggregate destruction)
Effect of soil organic matter on nutrient cycling
Accept, hold and release cations
High cation exchange capacity of soil organic matter improves the ability to retain base cations
Oxy-anion supply (N, P, S)
Organic N, P and S pool are source of plant available macronutrients via microbial mineralisation
Effect of soil organic matter on water regulation
Infiltration and retention
Encourages stable and diverse pore structure to receive, store, and release moisture for plant use
Water supply
Adequate water retention to buffer and reduce effects of drought
Buffers extreme rainfall events
Encourages infiltration to reduce erosion and pooling in extreme rain event.
Effect of soil organic matter on microbial function
Microbial diversity
Wide range of substrates supports many metabolic pathways, encouraging microbial diversity
Store and release (recycle) energy
Primary repository of chemical energy used in microbial respiration, drives all major nutrient cycles
Plant growth promotion
Supports higher levels of microbes which may benefit plant growth through disease suppression
e.g. beans have symbiotic relationship with bacteria which fix nitrogen from air, so you don’t need to add fertiliser
Effect of soil organic matter on plant growth
Seed germination and root growth
Improves seed imbibement and access to nutrients, reduces physical force on growing roots
Buffer acidity, sodicity
High CEC of soil can buffer and reduce adverse chemistry
Effect of soil organic matter on waste management
Sequester (hold or transform) biotoxic elements
High CEC can reduce metal mobility
Degrade organic substances
Supports diverse microbial population that can degrade xenobiotics
Decomposition
Decomposition involves the breakdown of large organic molecules into smaller, simpler components
List the organic compounds in order of decomposition rate.
Sugars, starches, and simple proteins
Crude proteins
Hemicellulose
Cellulose
Fats and waxes
Lignins and phenolic compounds
What are the four general processes that take place when OM is added to the soil (under aerobic conditions)?
Oxidation
Release
Synthesis
Protection
What reactions do microbes govern after the degradation of OM?
Plant carbon compounds are enzymatically oxidised to produce carbon dioxide, water, energy, and decomposer biomass
Essential nutrient elements (N, P, S) are released and/or immobilised by a series of specific reactions
New compounds are synthesised by microbes as cellular constituents or as breakdown products or secondary metabolites
Some of the original plant compounds, their breakdown products and microbial compounds become physically, or chemical protected from further microbial decay
Why is C:N ratio important in organic residues?
Intense competition among microorganisms for available soil nitrogen occurs when residues having a high C:N ration are added to soils
The residue C:N ratio helps determine the rate of decay and the rate at which nitrogen is made available to plant (N is the primary source of nutrition for plants)
This is why increasing soil N increases yield
Factors to keep in mind to manage carbon in soils
Carbon is removed from the soil when produce is harvested
Temperature, moisture and soil texture determine the concentration of OM in surface soils
Constant tillage can be unaffordable and speed up OM decomposition through oxidation and sunlight exposure
List the important soil organisms (by size)
Microorganisms
Viruses
Bacteria
Nematoda
Protozoa (amoeba, flagellates)
Rotifera
Meso-organisms
Acari (mites, ticks)
Collembolia (springtails)
Probura and diplura
Isoptera (termites)
Macro-organisms
Oligochaeta (microdriles, earthworms)
Myriapoda (symphylans, centipedes, millipedes)
Other arachnids (pseudoscorpions, spiders, harvesters)
Crustacea (isopods, amphipods)
Coleoptera (beetles)
How do organisms play a fundamental role in soil processes?
Facilitate carbon cycling
Facilitate nutrient cycling
Facilitate decomposition
As a result of this metabolism, soil is created and stabilized and carbon dioxide, heat energy, and mineral nutrients are released into the soil environment.
What identifying features of specific groups of soil organisms determine their importance?
The numbers of individuals in the soil
Their weight (biomass) per unit volume or area of soil
Their metabolic activity
What factors determine soil organism numbers?
Soil organism numbers are influenced primarily by the amount and quality (especially the C and N content) of food available
Physical factors
e.g. moisture and temperature
Biotic factors
e.g. predation and competition
Chemical characteristics of the soil
e.g. pH, dissolved nutrients, and salinity
Environmental conditions affecting the growth and activity of soil microorganisms:
e.g. organic resources, oxygen requirements (aerobic or anaerobic), soil moisture and temperature
*most activity occurs at the soil surface (the most dynamic layer of soil)
What are the beneficial effects of soil organisms on plant communities?
Soil organic matter formation and nutrient cycling
Decompose dead plant tissues
Assimilate wastes from animals and humans and other OM
Degrade toxins
Microbes synthesise new compounds (some stabilise soil structure)
Dead microbes are part of soil humus
Bacteria, fungi and archaeans may be sources of N, P and S (extracted in soil solution)
Breakdown of toxic compounds
Some of the toxics are produced by soil organisms, added on purpose (agrochemicals) or accidentally (environmental contamination)
Biologically produced toxins are prone to microbial breakdown
Fungi and soil prokaryotes are able to breakdown some toxins as well
Inorganic transformations
Oxidative processes stimulated by soil microorganisms
e.g. we usually apply nitrogen as urea which is degraded as ammonium to nitrates (which plants love)
Nitrogen fixation
The fixation of elemental nitrogen gas into compounds usable by plant is an important microbial process
Actinomycetes in the genus Frankia fix major amounts of nitrogen in forest ecosystems
Cyanobacteria are important in flooded rice paddies, wetland, and deserts
Rhizobia bacteria are the most important group for the capture of gaseous nitrogen in grassland and agricultural soils
Rhizobacteria
Bacteria especially adapted to living in the rhizosphere (the zone around plant roots) are termed rhizobacteria, many of which are beneficial to higher plants (the so-called plant growth-promoting rhizobacteria)
Certain rhizobacteria promote plant growth in other ways, such as enhanced nutrient uptake or hormonal stimulation
Mycorrhiza
Symbiotic relationship between certain fungi and roots of higher plants; they play crucial roles in plant nutrition, soil biology and soil chemistry
The most frequently reported benefit is enhanced ability of plants to take up P from low-phosphorus soils
e.g. ectomycorrhizal are fungi, simulated by root exudates, that cover the surface of feeder roots with a fungal mantle. Endomycorrhiza are fungal hyphae that actually penetrate cortical root cell walls and once inside the plant cell form small, highly branched structures known as arbuscules
Plant pests and parasites
Soil fauna include many herbivorous soil fauna that are injurious to the plants they feed on
Microbes and place disease
Disease infestations (great variety)
The fungi that are responsible for the majority of soilborne plant diseases
e.g. Agents of plant diseases like Pythium, Fusarium, Phytophthora, and Rhizoctonia Fungi
e.g. Symptoms include damping-off, root rots, leaf blights and wilts
What are soil colloids and the soil colloidal fraction?
The fraction of the soil made up collectively of small (<0.002 mm) inorganic and organic particles (clay and humus). Colloids are highly reactive materials with electrically charged surfaces (majority negative). Due to their size and shape, they give the soil an enormous amount of reactive surface area.
General properties of soil colloids
Size
Surface area
The smaller the size of the particles in a given mass of soil, the greater the surface area
Larger surface areas attracts more nutrients and contaminants
Surface charges
For majority of soil negative charge predominates (exception in very acidic soils)
Adsorption of cations and anions
Mostly attraction of positively charged ions (cations) to the surface of negatively charge soil colloids
Adsorption of water
Greater surface area of the soil colloids, the greater the amount of water held when the soil is air-dry
Why do sands leach quickly?
Pore spaces and surface area play a dominant role in transport processes of soil
Soil with a high hydraulic conductivity rate facilitate increased and rapid water movement through the soil which contributes to leaching
Why do clay minerals hold more water and nutrients?
Clay minerals have a layered structure and a large surface area that can absorb water and nutrients
More clay indicates more positions to hold cations
Low clay content means fewer positions to hold cations
Humus
Consists of highly decomposed organic matter that retains water and nutrients. These colloids have a complex structure and are chemically composed mainly of C, H and O.
Why do we add organic matter to soils?
Organic amendments (e.g. compost) are added to soil because humus increases surface area, nutrients, water holding capacity, porosity and carbon stocks .
Soil is negatively charged therefore, some of the cations (positively charged) will be easily absorbed onto the soil
Sometimes you need to be careful when you add fertiliser as nitrates can be easily leached
This is because there is no exchange between anions (negative charge) and soil particles (also negative charge).
What is cation exchange capacity (CEC) and why is it important?
A measure of how many cations can be retained on soil particle surfaces. Negative charges on the surfaces of soil particles bind positively-charged atoms or molecules (cations) but allow these to exchange with other positively charged particles in the surrounding soil solution.
CEC is used as a measure of soil fertility: it indicates the capacity of the soil to retain several nutrients
Bigger CEC rates mean greater nutrient retention
Soil aeration
Soil must be well ventilated for plant roots and other soil organisms to readily carry on respiration. This allows the exchange of gases between the soil and the atmosphere to supply enough oxygen (O2), while preventing the potentially toxic accumulation of gases such as carbon dioxide (CO2), methane (CH4) and ethylene (C2H6).
However, hydrophytes are able to grow in saturated soils that are virtually devoid of oxygen (e.g. the unique root system of mangroves).
Factors affecting soil aeration
Drainage of excess water
Rates of respiration in the soil (plant roots and microbial activity)
Soil profile characteristics (layering)
Soil heterogeneity (tillage, pore sizes, plant root pathways)
Seasonal differences (dry and wet phases)
Effects of vegetation (increased transpiration – water table)
What factors regulate oxygen availability in the field?
Soil macroporosity
Soil water content
O2 consumption by respiring organisms (including plant roots and microorganisms)
Soil temperature
The temperature of a soil greatly affects the physical, biological, and chemical processes occurring in that soil and in the plants growing on it. Temperature impacts seed germination and plant emergence, root shoot growth and function (water and nutrient uptake), and photosynthesis (optimum temp range).
What soil processes does temperature influence?
Pedogenetic processes
Weathering of minerals and soil formation, accumulation of soil organic matter
Soil water storage (evaporation), movement of water, freezing and thawing
Soil respiration (gas exchange)
Nutrient cycling
Microbial processes
How do we control soil temperature?
Organic mulches and plant-residue management
Applying different coloured mulch (seal the surface) can reduce evaporation loss, leaching and act as weed control
Plastic mulches
Can be environmentally problematic
Soil moisture to cool crops
Drainage and irrigation systems
e.g In Europe farmers apply an irrigation system in winter to insulate (freeze) crops like cherries to prolong the period before flowering
Tillage practices (raised beds)
Soil heat capacity
The ability of a substance to hold or store heat. The greater its heat capacity, the more heat it can gain (or lose) per unit rise (fall) in temperature.
Thermal conductivity
The ability of soil to conduct heat. It describes the heat flow in response to temperature gradient (change).