Gibbs Free Energy, Nucleobases, Amino Acids

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40 Terms

1
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Draw Glycine

Gly, G

  • nonpolar

<p>Gly, G</p><ul><li><p>nonpolar</p></li></ul><p></p>
2
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Draw Alanine

Ala, A

  • nonpolar

<p>Ala, A</p><ul><li><p>nonpolar</p></li></ul><p></p>
3
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Draw Valine

Val, V

  • nonpolar

<p>Val, V</p><ul><li><p>nonpolar</p></li></ul><p></p>
4
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Draw Leucine

Leu, L

  • nonpolar

<p>Leu, L</p><ul><li><p>nonpolar</p></li></ul><p></p>
5
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Draw Isoleucine

Ile, I

  • nonpolar

<p>Ile, I</p><ul><li><p>nonpolar</p></li></ul><p></p>
6
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Draw Methionine

Met, M

  • nonpolar

<p>Met, M</p><ul><li><p>nonpolar</p></li></ul><p></p>
7
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Draw Phenylalanine

Phe, F

  • nonpolar

  • aromatic

<p>Phe, F</p><ul><li><p>nonpolar</p></li><li><p>aromatic</p></li></ul><p></p>
8
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Draw Tryptophan

Trp, W

  • nonpolar

  • aromatic

<p>Trp, W</p><ul><li><p>nonpolar</p></li><li><p>aromatic</p></li></ul><p></p>
9
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Draw Tyrosine

Tyr, Y

  • nonpolar

  • aromatic

  • —OH can be phosphorylated

<p>Tyr, Y</p><ul><li><p>nonpolar</p></li><li><p>aromatic</p></li><li><p>—OH can be phosphorylated</p></li></ul><p></p>
10
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Draw Proline

Pro, P

  • nonpolar

  • bad for alpha helix (helix breaker) 

  • good for “tight turns” 

<p>Pro, P</p><ul><li><p>nonpolar</p></li><li><p>bad for alpha helix (helix breaker)&nbsp;</p></li><li><p>good for&nbsp;“tight turns”&nbsp;</p></li></ul><p></p>
11
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Draw Serine

Ser, S

  • polar- uncharged

  • hydrogen bonding

  • —OH can be phosphorylated

<p>Ser, S</p><ul><li><p>polar- uncharged</p></li><li><p>hydrogen bonding</p></li><li><p>—OH can be phosphorylated</p></li></ul><p></p>
12
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Draw Threonine

Thr, T

  • polar- uncharged

  • hydrogen bonding

  • —OH can be phosphorylated

<p>Thr, T</p><ul><li><p>polar- uncharged</p></li><li><p>hydrogen bonding</p></li><li><p>—OH can be phosphorylated</p></li></ul><p></p>
13
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Draw Asparagine

Asn, N

  • polar- uncharged

  • hydrogen bonding

<p>Asn, N</p><ul><li><p>polar- uncharged</p></li><li><p>hydrogen bonding</p></li></ul><p></p>
14
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Draw Glutamine

Gln, Q

  • polar- uncharged

  • hydrogen bonding

<p>Gln, Q</p><ul><li><p>polar- uncharged</p></li><li><p>hydrogen bonding</p></li></ul><p></p>
15
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Draw Cysteine

Cys, C

  • polar- uncharged

  • disulfide bond

  • R configuration

<p>Cys, C</p><ul><li><p>polar- uncharged</p></li><li><p>disulfide bond</p></li><li><p>R configuration </p></li></ul><p></p>
16
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Draw Aspartic acid

Asp, D

  • polar- charged

  • acidic (-) 

<p>Asp, D</p><ul><li><p>polar- charged</p></li><li><p>acidic (-)&nbsp;</p></li></ul><p></p>
17
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Draw Glutamic acid

Glu, E

  • polar- charged

  • acidic (-) 

<p>Glu, E</p><ul><li><p>polar- charged</p></li><li><p>acidic (-)&nbsp;</p></li></ul><p></p>
18
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Draw Histidine

His, H

  • polar- charged

  • basic (+)

<p>His, H</p><ul><li><p>polar- charged</p></li><li><p>basic (+) </p></li></ul><p></p>
19
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Draw Lysine

Lys, K

  • polar- charged

  • basic (+)

<p>Lys, K </p><ul><li><p>polar- charged</p></li><li><p>basic (+) </p></li></ul><p></p>
20
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Draw Arginine

Arg, R

  • polar- charged

  • basic (+) 

<p>Arg, R</p><ul><li><p>polar- charged</p></li><li><p>basic (+)&nbsp;</p></li></ul><p></p>
21
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Disulfide Bond

can link polypeptide chains

<p>can link polypeptide chains</p><p></p>
22
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Draw Adenine

purine

<p>purine</p>
23
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Draw Guanine

purine

<p>purine</p>
24
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Draw Cytosine

pyrimidine

<p>pyrimidine</p>
25
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Draw Uracil

pyrimidine

<p>pyrimidine</p>
26
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Draw Thymine

pyrimidine

<p>pyrimidine</p>
27
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nucleoside

base + pentose

ribose or 2’-deoxyribose

28
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Draw Adenosine

knowt flashcard image
29
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Draw Guanosine

knowt flashcard image
30
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Draw Cytidine

knowt flashcard image
31
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Draw Uridine

knowt flashcard image
32
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Draw Deoxyadenosine

knowt flashcard image
33
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Draw Deoxyguanosine

knowt flashcard image
34
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Draw Deoxycytidine

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35
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Draw Deoxythymidine

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36
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Draw Nucleotides

<p></p>
37
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Nucleotides are linked by ___ bonds

3’-5’ phosphodiester bonds

3' hydroxyl group of one nucleotide's sugar and the 5' phosphate group of the next nucleotide's phosphate

<p>3’-5’ phosphodiester bonds </p><p><span>3' hydroxyl group of one nucleotide's sugar and the 5' phosphate group of the next nucleotide's phosphate</span></p>
38
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Gibb's Free Energy equation

ΔG = ΔH - TΔS

39
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Gibbs Free Energy concentration equation

for nA + oB —> pC + qD

ΔG = ΔG° + RT ln ([C]p[D]q/[A]n[B]o)

40
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Gibbs Free Energy at equilibrium

ΔG=0

Keq= [C]eqp[D]eqq/[A]eqn[B]eqo

ΔG° = -RT ln Keq

Keq=e-ΔG°/RT