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Molecular phylogenetics
Compare the genetic sequences in a group of taxa to determine the phylogeny that best explains how an ancestral sequence gave rise to the current patterns through mutation and fixation
Gene tree
Refers to the branches genealogical lineage of homologous alleles that traces their evolution back to an ancestral state
Represents the genealogical history of a group of gene copies at the same locus
Coalescence
The process by which, looking back through time, the genealogy of any pair of homologous alleles merges in a common ancestor
Polymorphic
Presence of 2 or more genetically different alleles at a locus within a population
Incomplete Lineage Sorting (ILS)
Describes the case when the history of a gene differs from the history of the species carrying the gene