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Pathogen
disease-causing microorganism
Infection
the invasion and colonization of the pathogen causes disease in the body (physical presence of a pathogen)
Intoxication
the pathogen produces a toxin, which causes the disease
Disease
Abnormal state in which part or all of the body is not properly adjusted or is incapable of performing normal functions (change in health state)
What determines if a host falls into a disease state?
The ability of the pathogen to overcome your body’s defenses
Host
organism that shelters and supports the growth of the pathogen
Pathology
study of disease
3 focuses of pathology
Etiology: cause of disease
Pathogenesis: development of disease over time
Effects of the disease
2 types of microbiota found in the body
Normal microbiota
Transient microbiota
Normal microbiota
microorganisms that establish permanent colonies inside the body without producing disease (resident microbes)
When does colonization of resident microbiota occur?
Placental microbiome - established during vaginal delivery
How does the colonization of resident microbiota occur for babies born by C-section?
In C-section, this occurs over time through breastfeeding, interaction with the environment, etc.
Transient microbiota
microbes that are present for various periods and then disappear
2 types of relationships between the normal microbiota and host
Microbial antagonism
Symbiosis
Microbial antagonism
microbiota prevent pathogens from causing infection through the process of competitive exclusion - there are limited resources, which are used by the microbiota
Symbiosis
we live in harmony with the microbiota
3 types of symbiotic relationships (one isn’t really symbiotic)
Commensalism
Mutualism
Parasitism
Commensalism
one organism benefits and the other is unaffected
Example of commensalism
Bacteria that lives in the ear and eats earwax
Mutualism
both organisms benefit from the relationship
What is a parasitic relationship associated with?
associated with disease state
Parasitism
one organism benefits, but the other is harmed
Example of a parasitic relationship
COVID-19
Opportunistic microorganims
microorganisms that do not cause disease under normal conditions, but can cause disease under special conditions
3 examples of opportunistic microorganisms
E. Coli
Yeast and fungal infections in the genital tract and mouth
Skin bacteria in the presence of a wound can infect the dermal layer
E. Coli mechanism (opportunistic infection)
non-pathogenic E. Coli in the GI tract is normal, but if the E. Coli makes its way to the urinary tract, it can cause a UTI
What is cooperation associated with?
Disease state
Cooperation
one microorganism to cause disease or produce severe symptom
Koch’s Postulates
criteria that established that specific microbes cause specific disease (determines etiology)
4 requirements of Koch’s postulates
The same pathogen must be present in every case of the disease
The pathogen must be isolated in pure culture
The pathogen that was isolated must cause disease in a healthy, susceptible lab animal
The pathogen must be re-isolated from the inoculated lab animal
5 exceptions to Koch’s postulates
Viruses and some bacteria cannot be grown on artificial media → must use tissue culture or “trust” the system
Some diseases have unequivocal signs and symptoms
Some diseases may be caused by a variety of microbes
Some pathogens cause several different diseases
Some pathogens cause disease in humans only
Example of a bacterium that cannot be grown on artificial media
Mycobacterium leprae
Example of a disease that has unequivocal signs and symptoms
Tetanus
3 examples of diseases that may be caused by a variety of microbes
Pneumonia
Nephritis
Meningitis
Example of. apathogen that can cause several different diseases (and 2 diseases it can cause)
S. pyogenes → causative agent of strep throat, heart issues
Example of a pathogen that can cause disease in humans only
HIV
Signs vs. symptoms
Signs: measurable changes
Symptoms: subjective changes in the body function
Diagnosis
identification of the disease and/or pathogen
Syndrome
a specific group of symptoms and/or signs that always accompanies a specific disease
2 types of diseases (classified by transmissibility)
Communicable
Non-communicable
Communicable disease
transmitted directly or indirectly from one host to another
Non-communicable disease
disease is caused by a microbe that normally grows outside of the human body - not able to be transmitted from one host to another
Contagious disease
communicable diseases that spread easily and rapidly from one person to another
How is occurrence reported?
by incidence (number of people contracting the disease) and prevalence (# of people with the disease) in a defined population and in a specified time
4 types of frequencies of occurrence
Sporadic
Endemic
Epidemic
Pandemic
Sporadic occurrence
pops up sporadically in a defined population
Is incidence high or low in sporadic occurrence? How about prevalence?
High incidence
Low prevalence
Is prevalence high or low in endemic diseases?
High prevalence
Epidemic
number of incidences is high for a specific population
Pandemic
epidemic that spreads to multiple geographical locations across the globe
4 ways to describe the scope of a disease
Acute
Chronic
Subacute
Latent
Acute disease
high severity, short duration with a beginning and end
Chronic disease
severity may be lower, but it is spread out over a longer period of time
Subacute disease
between acute and chronic
Latent disease
present but dormant, but can recur
Herd immunity
associated with the presence of immunity to a disease in most of the population
How is herd immunity typically accomplished?
Immunization
What is herd immunity dependent on?
Immune response to the pathogen
Epidemic curve
visual display of the onset of illness among cases associated with an outbreak
What do the x-axis and y-axis of the epidemic curve show?
X-axis: date or time of illness onset among cases
Y-axis: number of cases
Magnitude of epidemic curve
number of cases in an outbreak
Time trend of epidemic curve
distribution of cases over time
Outliers of epidemic curve
cases that stand apart from other cases
Index case
source of the outbreak
Secondary spread
often indicated by cases that occur well after other cases
Mode of spread of epidemic curve
how the disease is transmitted
3 modes of spread
Point source
Continuous common source
Propagation (person-to-person spread)
Point source mode of spread
persons are exposed over a brief time to the same source
2 characteristics of point source mode of spread
The number of cases rises rapidly to a peak and falls gradually
The majority of cases occur within one incubation period of the disease
Continuous common source mode of spread
persons are exposed to the same source by exposure is prolonged over a period of days, weeks, or longer
Characteristic of an epidemic curve of continuous common source spread
Epi curve rises gradually and might plateau
Propagation mode of spread
there is no common source because the outbreak spread from person-to-person
Epidemic curve of propagation mode of spread
Graph assumes the classic epi curve shape of progressively taller peaks, each being one incubation period apart
2 examples of mutualistic relationships
Lactobacillus in the human GI system
E. Coli in the human GI system
Example of a commensal relationship
Staphylococcus epidermidis on human skin
Examples of a parasitic relationship
Taenia solium (beef tapeworm)