Biological molecules

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What is a monomer?

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1

What is a monomer?

A small, basic molecular unit that can form a polymer

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2

What is a polymer?

They are large, complex molecules composed of long chains of monomers joined together

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3

What is a condensation reaction?

It forms a chemical bond between monomers, releasing a molecule of water

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4

What is a hydrolysis reaction?

It involves breaking the chemical bonds between monomers using a water molecule

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5
<p>What isomer of glucose is this? </p>

What isomer of glucose is this?

Alpha glucose

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6
<p>What isomer of glucose is this?</p>

What isomer of glucose is this?

Beta glucose

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7

What are the four isomers of glucose?

Alpha glucose, Beta glucose, fructose and galactose

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8

What is a disaccharide?

When two monosaccharides join together by condensation reactions

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9

What is a glycosidic bond?

It forms between the two monosaccharides as a molecule of water is released

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10

What does alpha glucose + alpha glucose make?

Maltose

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11

What two monomers make sucrose?

Alpha glucose + fructose

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12

What two monomers make lactose?

Alpha glucose + galactose

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13

How do you test for reducing sugars?

  1. Add Benedict’s reagent to a sample and heat it in a water bath

  2. Sample forms green yellow →Orange →brick red precipitate

  3. If it remains blue then theres no reducing sugar present

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14

How do you test for non-reducing sugars?

  1. Heat sample with Benedict’s reagent

  2. Sample will stay blue

  3. Heat a new sample with dilute hydrochloric acid then neutralise the sample by adding sodium hydrogen carbonate.

  4. Heat sample with Benedict’s reagent

  5. Sample forms green yellow →Orange →brick red precipitate

  6. If it remains blue then theres no reducing sugar present

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15

What is a polysaccharide?

It is formed when more than two monosaccharides are joined together by condensation reactions

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16

What is starch?

It is a mixture of two polysaccharides of alpha-glucose — amylose and amylopectin

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17

What is the structure of Amylose?

It is a long, unbranched chain of alpha-glucose. The angles of glycosidic bonds give it a coiled structure, almost like a cylinder

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18

What is the structure of Amylopectin?

It is a long, branched chain of alpha-glucose.

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19

What does the structure of amylose do to help it?

It is compact, so it is a good storage molecule because you can fit more in a small space

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20

What does the structure of amylopectin do to help it?

Its side branches allow the enzymes that break down the molecule to get at the glycosidic bonds easily. This means that glucose can be released quickly.

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21

What makes starch good for storage?

  1. It is insoluble in water and doesn’t affect water potential.

  2. It doesn’t cause water to enter the cells by osmosis

  3. It is a large molecule so it can’t leave the cell

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22

Where is starch found?

Plants only:

  1. Starch grains

  2. Seeds

  3. Storage organs

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23

What is the the structure of Glycogen?

Its structure is very similar to that of amylopectin, except that it has loads more side branches

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24

How does the structure of Glycogen help it for its function?

  1. Loads of branches means that stored glucose can be released quickly

  2. It is compact so it’s good for storage

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25

What is the structure of Cellulose?

  1. It is made of long, unbranched chains of Beta-glucose in parallel to each other

  2. When beta-glucose molecules bond, they form straight cellulose chains.

  3. These cellulose chains are linked by hydrogen bonds to form strong fibres called micofibrils

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26

How does the structure of cellulose it for its function?

The strong fibres mean it provides structural support for cells

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27

What test is used for starch?

Iodine

  • the test sample and iodine is dissolved in potassium iodide solution

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28

What colours shows starch is present?

  1. Browny-orange colour shows no starch

  2. Dark,blue-black colour shows starch

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29

What are the properties of Lipids?

  • Contain Carbon, Hydrogen and Oxygen

  • The proportion of carbon to oxygen and hydrogen is smaller than in carbs

  • They are insoluble in water

  • They are soluble in organic solvents such as alcohols and acetone

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30

What are roles of lipids?

  • Flexible cell membranes

  • Source of energy

  • Waterproofing

  • Insulation

  • Protection

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31

How do you test for lipids?

  1. Add 2cm³ of the sample being tested and 5cm³ of ethanol

  2. Shake tube

  3. Add 5cm³ of water and shake

  4. A white emulsion should appear if it is present

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32

What is the structure of triglycerides?

They have 3 fatty acids combined with glycerol

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33

What bond is made in Triglycerides?

Ester bond

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34

What does unsaturated fat mean?

When there is a double bond between two carbons

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35

What is the structure of phospholipids?

  • One fatty acid is replaced by a phosphate group

  • Fatty acid molecules repel water and phosphate molecules attract water

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36

How does the structure of phospholipids help its function?

  1. They form a bilayer with cell-surface membrane

  2. Form glycolipids important in cell recognition

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37

What makes up polypeptides?

Amino acids

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38

What is the general formula for amino acids?

NH2.RCH.COOH

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39

How many essential amino acids are there?

8

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40

What is the primary structure of proteins?

The sequence of amino acids in a polypeptide chain

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41

What is the secondary structure of proteins?

Polypeptide chains are either coiled into a spiral alpha-helix or linked to form beta-pleated sheets

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42

What is the structure of alpha-helixs?

The coils of the chain are held together by hydrogen bonds that form between the amine group and carboxyl group of different amino acids

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43

What is the structure of beta-pleated sheets and what does it do to help its function?

Hydrogen bonds form between the CO and NH group of one chain and the NH and CO groups of neighboring chains.

  • This gives it high tensile strength

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44

What is the tertiary structure of proteins?

The alpha-helices of the secondary structure can be twisted and folded to give 3D structures of each protein

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45

What bonds are formed in the tertiary structure of proteins?

  • Disulfide bridges - Which are fairly strong and therefore not broken easily.

  • Ionic bonds - Formed between any CO and NH groups that are not involved in the forming of peptide bonds. These can be broken easier by changes in pH.

  • Hydrogen bonds - Which are numerous and easily broken.


There are also hydrophobic and hydrophilic interactions

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46

What is the quaternary structure of proteins?

They consist of more than one polypeptide chain and has other inorganic substances incorporated

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47

What is Haemoglobin made of?

  • Made of 4 polypeptide chains held together by disulfide bridges

  • Each chain has an Iron-containing haem group

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48

How much oxygen can each haemoglobin carry?

8

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49

How do you classify proteins and what are the differences between them?

Fibrous

Globular

-Secondary structure

-Tertiary structure

-Insoluble in water

-Soluble in water

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50

What type of proteins are enzymes?

Globular

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51

What is a enzyme?

An enzyme is a biological catalyst, it speeds up the biochemical process but they remain unchanged at the end of the process

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52

How do enzymes work in catabolic reactions and name a example?

  • Enzymes active sites affect the bonds in substrates so they are easier to break

  • These are exothermic reactions

  • A example is respiration

  • Often involves oxidation of hydrolysis

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53

How do enzymes work in anabolic reactions and name a example?

  • Enzymes bring the substrate molecules together

  • These are endothermic reactions

  • A example is photosynthesis

  • Often involves condensation reactions

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54

What is the active site of a enzyme?

  • The part of the enzyme where the substrate binds to

  • Specific shape due to its tertiary structure

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55

What is the enzyme substrate complex?

The intermediate bond formed when a substrate binds to the active site of an enzyme

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56

What is the lock and key model?

The active site of the enzyme is complementary to the specific shape of the substrate

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57

What is the induced fit model?

  • Activation energy of a substrate is lowered due to the distortion of bonds in the enzyme-substrate complex

  • The active site is flexible and fits around the substrate molecule

  • Before returning to its original shape

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58

How does concentration of substrate and product change over time?

  1. High concentration of substrate, means there is no products

  2. This makes it easy for the substrate to come into contact with the active site

  3. As all the active sites are filled, the reaction happens quickly

  4. This means Substrate concentration decreases and product concentration increases

  5. This makes it more difficult for successful collisions to take place between the substrate and enzymes

  6. This makes the rate of reaction slows down

  7. Eventually so little substrate that there is no change in concentration

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59
<p>What happens at low temps, optimum temps and high temps?</p>

What happens at low temps, optimum temps and high temps?

  • At low temperature there is a low rate due to kinetic energy. There are few successful collisions between enzymes and substrates lead to slow rates

  • At optimum temperatures there are lots of collisions.

  • At high temperatures, bonds in the tertiary structure of enzymes are broken so the active site changes shape

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60

What is enzyme inhibition?

Enzyme inhibitors are substances that directly or indirectly interfere with the active site of the enzyme

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61

What are the two categories of enzyme inhibitors?

  1. Competitive inhibitors: Which bind to the active site of the enzyme

  2. Non-competitive inhibitors: Which bind to the enzyme at a position than the active site

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62

What are some examples of enzyme inhibitors?

  • Heavy metals which are irreversible non-competitive inhibitors

  • Cyanide is a irreversible inhibitor preventing ATP synthesis

  • Toxins/Venoms contain inhibitor that block enzymes

  • Antibiotics penicillin inhibit bacterial cell wall synthesis

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63

How do competitive inhibitors work?

  • They have a similar shape to that of the substrate and can occupy the active site

  • The inhibitor is not permanently bound so will get released

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64

How do non-competitive inhibitors work?

  • Attach themselves to the enzyme at a binding site which isn’t the active site

  • Upon attaching this alters the shape of the enzyme’s active site

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