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Promoter
Region of DNA where RNA polymerase binds to start transcription.
Transcription Unit
Section of DNA that is transcribed into RNA.
Start Point
The first nucleotide where RNA synthesis begins.
RNA Polymerase
Enzyme that builds RNA by reading the DNA template.
5′ End (DNA/RNA)
The "beginning" of a nucleic acid strand; direction RNA is synthesized toward.
3′ End (DNA/RNA)
The "end" of a nucleic acid strand; RNA polymerase reads the template 3′→5′.
Prokaryotic Initiation
RNA polymerase binds directly to the promoter and starts transcription without extra proteins.
TATA Box
A promoter sequence found in many eukaryotic genes.
Transcription Factors
Proteins that help RNA polymerase bind the promoter.
RNA Polymerase II
Enzyme that transcribes mRNA in eukaryotes.
Template Strand (DNA)
The DNA strand used as a template to build RNA.
RNA Transcript
The newly forming strand of RNA.
Elongation (Transcription)
RNA polymerase moves downstream, adding RNA nucleotides to extend the RNA strand.
Nontemplate Strand (DNA)
The DNA strand not used for RNA synthesis.
Direction of Transcription
RNA is always built 5′ → 3′.
Prokaryotic Termination
RNA polymerase reaches a terminator sequence and releases the RNA molecule.
Polyadenylation Signal (AAUAAA)
Sequence in RNA that signals cutting and termination.
5′ Cap
Modified G nucleotide added to the 5′ end of eukaryotic mRNA.
5′ UTR / 3′ UTR
Regulatory regions before and after the coding sequence.
Start Codon (AUG)
The first codon used to begin translation.
Stop Codon (UAA, UAG, UGA)
Codons that signal the end of translation.
Poly-A Tail
A long chain of adenines added to the 3′ end of eukaryotic mRNA.
Exons
Coding regions that remain in the final mRNA.
Introns
Non-coding regions removed during splicing.
snRNA
Small nuclear RNA molecules that help with splicing.
snRNPs
Protein-RNA complexes that form part of the spliceosome.
Spliceosome
Complex that removes introns and joins exons.
Aminoacyl-tRNA Synthetase
Enzyme that attaches an amino acid to a tRNA.
ATP (in tRNA charging)
Energy source used to attach amino acids to tRNA.
Aminoacyl-tRNA (Charged tRNA)
A tRNA carrying its specific amino acid.
Translation Initiation
The ribosome assembles on mRNA, and the initiator tRNA binds the start codon.
Stop Codon
mRNA signal that causes translation to end.
Release Factor
Protein that binds the stop codon and frees the polypeptide.
Free Polypeptide
The finished amino acid chain (protein).
GTP → GDP (Termination)
Energy used to release the ribosome and complete translation.