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Vocabulary flashcards covering water as solvent, weak interactions, acid-base chemistry, buffers, and pH concepts from the lecture notes.
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Water as solvent
Dissolves salts and charged biomolecules by screening electrostatic interactions; dissolution is often entropically driven.
Dielectric constant (ε)
A dimensionless property indicating solvent polarity; water ≈ 78.5 at 25°C; benzene ≈ 4.6.
Hydrogen bonds
Electrostatic attractions between a hydrogen atom covalently bonded to an electronegative atom and another electronegative atom; key to water’s properties.
Hydrophobic effect
Nonpolar regions cluster in water to maximize water–water hydrogen bonding, increasing entropy by freeing ordered water; drives micelle formation.
Hydrophilic
Describes compounds that dissolve easily in water; typically charged or polar.
Hydrophobic
Describes nonpolar compounds (e.g., lipids, waxes) that do not dissolve well in water.
Amphipathic
Molecules with both polar/charged and nonpolar regions; polar parts interact with water while nonpolar parts cluster away.
Polar biomolecules
Biomolecules with polar groups (e.g., glucose, glycine) that interact favorably with water.
Nonpolar biomolecules
Biomolecules lacking polar groups; tend to be hydrophobic and water-insoluble.
Ionization (of water)
Water self-ionizes to give H+ (proton) and OH−; H+ is hydrated to form H3O+ (hydronium).
Equilibrium constant (Keq)
Represents the position of equilibrium for a reaction; Keq = [C][D]/[A][B] for AB ⇌ CD.
Ka (acid dissociation constant)
Ka = [H+][A−]/[HA] for HA ⇌ H+ + A−; larger Ka means a stronger acid.
pKa
−log(Ka); the pH at which an acid is half-dissociated; lower pKa = stronger acid.
Conjugate acid-base pair
Two species related by proton transfer (e.g., HA/ A−, HB+/B; H2CO3/HCO3−, NH4+/NH3).
Buffer
Aqueous system that resists pH changes when small amounts of acid or base are added; typically a weak acid and its conjugate base.
Buffering region
Flat portion of a titration curve around pKa where [HA] ≈ [A−], pH ≈ pKa.
Henderson–Hasselbalch equation
pH = pKa + log([A−]/[HA]); relates pH, pKa, and buffer composition.
Acetate buffer (acetic acid / acetate)
Buffer system with pKa ≈ 4.76: CH3COOH ⇌ H+ + CH3COO−.
Bicarbonate buffer system
In blood: H2CO3 ⇌ H+ + HCO3−; maintains around pH 7.4; involves CO2 hydration and bicarbonate.
Hydration/CO2 hydration constant (Kh)
Kh is the equilibrium constant for the hydration of CO2 to form H2CO3 in water.
Kcombined
Overall equilibrium constant for CO2 hydration and subsequent reactions; used with pKcombined to relate CO2/HCO3− to pH.
pKcombined
−log(Kcombined); approximately 6.1 at body temperature, used in blood pH calculations.
pH
A measure of hydrogen ion activity in solution; pH = −log[H+].
Kw (ion product of water)
Kw = [H+][OH−]; at 25°C, Kw ≈ 1.0 × 10−14 M2; relates [H+] and [OH−].
Hydronium ion (H3O+)
Protonated water formed when water accepts a proton during ionization.
Osmotic pressure (Π)
Force needed to resist water movement across a semipermeable membrane; Π ≈ i c R T.
Osmolarity
Product i × c; effective solute particle concentration in solution.
Osmosis
Movement of water across a semipermeable membrane driven by osmotic pressure differences.
van der Waals interactions
Weak distance-dependent attractions/repulsions between transient dipoles (London dispersion forces).
van der Waals radius
A measure of the space-filling size of an atom; helps determine how closely atoms can approach.
Proton hopping
Rapid transfer of protons between water molecules via H3O+/H2O networks.
Proton donor/acceptor in buffers
Buffers involve a weak acid (proton donor) and its conjugate base (proton acceptor).
Histidine (pKa)
Amino acid with side chain pKa near 6.0; buffers near neutral pH in enzymes.
Phosphate buffer system
In cells: H2PO4− ⇌ H+ + HPO4^2−; most effective near pH 6.86; works from ~5.9 to 7.9.
Bicarbonate buffer pH dependence
Blood pH near 7.4 depends on [HCO3−] and CO2 (pCO2); buffers adjust with respiration.
pH of blood
Typically around 7.35–7.45; buffered to ~7.4 in healthy individuals.
Acids and bases titration curves
Plot of pH vs added base; midpoint corresponds to pKa for weak acids.
Ka and pKa relationship (stronger acids)
Stronger acids have larger Ka and thus smaller pKa.
Neutral pH
At 25°C, pure water has pH = 7 (equal [H+] and [OH−]).
Amino acid buffer near physiological pH
Some amino acids (e.g., histidine) buffer effectively near pH 7 due to side-chain pKa.
Buffer capacity
Extent to which a buffer resists pH changes; depends on buffer concentration and pKa.
Hypertonic/Hypotonic/Isotonic (contextual)
Descriptions of solutions by osmolarity relative to cell cytosol; hypotonic solutions cause swelling.
Titration midpoint
The point on a titration curve where pH equals pKa; half-neutralization of the acid/base.