A2.2 Cell Structure | IB Biology HL (copy)

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State the three parts of the cell theory.

A2.2.1: Cells as the basic structural unit of all living organisms

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1

State the three parts of the cell theory.

A2.2.1: Cells as the basic structural unit of all living organisms

  1. All organisms are composed of one or more cells.

  2. The cell is the basic unit of life.

  3. All cells come from preexisting cells.

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2

List the functions of life.

A2.2.1: Cells as the basic structural unit of all living organisms

Functions of life:  things that all organisms must do to stay alive. 

  • Nutrition:  Obtains food for energy & materials in order to grow 

  • Metabolism:  Carries out chemical reactions inside the cell

  • Growth:  Increases in size, irreversible (cannot grow smaller) 

  • Response:  Can react to changes in the environment 

  • Excretion:  Release waste products that can’t be used (toxic or harmful)

  • Homeostasis:  Can keep the conditions inside the organism within a tolerable range 

  • Reproduction:  Produce offspring (sexually or aesexually) 

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3

Compare the use of the word theory in daily language and scientific language.

A2.2.1: Cells as the basic structural unit of all living organisms

In daily use, a theory is a guess, so there is doubt.

In scientific use, a theory has been shown to be true through repeated observations & experiments. There is no current doubt because there is no evidence that does not support the idea thus far.

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4

Distinguish inductive from deductive reasoning. 

A2.2.1: Cells as the basic structural unit of all living organisms

Inductive reasoning uses specific observations to form a general conclusion.

Deductive reasoning uses a general premise to form a specific conclusion.

<p><strong><span style="color: blue">Inductive reasoning</span></strong><span style="color: blue"> uses specific observations to form a general conclusion.</span></p><p><strong><span style="color: purple">Deductive reasoning</span></strong><span style="color: purple"> uses a general premise to form a specific conclusion.</span></p>
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5

Outline the process of inductive reasoning that led to the development of the cell theory. 

A2.2.1: Cells as the basic structural unit of all living organisms

Biologists examined tissues from both plants & animals and saw that every specimen contained at least one or more cells, allowing them to reason that all living things are composed of one or more cells.  

Subcellular components have never been seen to perform the functions of life, while full cells have, suggesting that the cell is the basic unit of life.

We have observed cells coming from other cells, but never spontaneous generation, so all cells must come from preexisting cells.  

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6

​Outline how deductive reasoning can be used to predict characteristics of a newly discovered organism.​

A2.2.1: Cells as the basic structural unit of all living organisms

A deduction will only hold true if the premises are correct. If the premises are incorrect, the deductions will also be incorrect (even if the logical reasoning is valid) 

Deductive reasoning can use an existing theory to propose a hypothesis about the characteristics of a newly discovered organism. For instance, if we know all organisms are made of one or more cells and slime molds are living organisms, then slime molds must be made of cells.

<p>A deduction will only hold true if the premises are correct. If the premises are incorrect, the deductions will also be incorrect (even if the logical reasoning is valid)&nbsp;</p><p>Deductive reasoning can use an existing theory to propose a hypothesis about the characteristics of a newly discovered organism. For instance, if we know all organisms are made of one or more cells and slime molds are living organisms, then slime molds must be made of cells. </p>
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7

Given the magnification of the ocular and objective lenses, calculate the total microscope magnification.

A2.2.2: Microscopy Skills

Total magnification = ocular magnification x objective lens.

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8

Demonstrate how to focus the microscope on a sample.

A2.2.2: Microscopy Skills

Turn the coarse focus knob so that the stage moves upward toward the objectives and move it as close as possible without touching the slide.

Turn the coarse adjustment so that the stage moves down until the image comes into broad focus.

Turn the fine adjustment knob as necessary.

<p>Turn the <strong>coarse focus</strong> knob so that the stage moves upward toward the objectives and move it as close as possible without touching the slide. </p><p>Turn the <strong>coarse adjustment</strong> so that the stage moves down until the image comes into broad focus. </p><p>Turn the <strong>fine adjustment</strong> knob as necessary. </p>
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9

Demonstrate how to make a temporary wet mount and stain a microscopic sample. 

A2.2.2: Microscopy Skills

A wet mount is a drop of water used to suspend the specimen between the slide and cover slip.

Procedure for making a wet mount: 

  • Place a sample on the slide 

  • Place a drop of water on the specimen using a pipette 

  • Place the edge of the cover slip over the sample at an angle & lower into place 

    • This prevents air bubbles from being trapped under the cover slip 

  • Take a piece of paper towel & hold it close to one edge of the cover slip (to draw out some water)

A stain is a chemical that binds to structures within the sample to make them look more clear. They are added when making a wet mount slide.

<p>A wet mount is a drop of water used to suspend the specimen between the slide and cover slip. </p><p>Procedure for making a wet mount:&nbsp;</p><ul><li><p>Place a sample on the slide&nbsp;</p></li><li><p>Place a drop of water on the specimen using a pipette&nbsp;</p></li><li><p>Place the edge of the cover slip over the sample at an angle &amp; lower into place&nbsp;</p><ul><li><p>This prevents air bubbles from being trapped under the cover slip&nbsp;</p></li></ul></li><li><p>Take a piece of paper towel &amp; hold it close to one edge of the cover slip (to draw out some water)</p></li></ul><p>A stain is a chemical that binds to structures within the sample to make them look more clear. They are added when making a wet mount slide. </p>
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10

Demonstrate how to draw cell structures seen with a microscope using sharp, carefully joined lines and straight edge lines for labels.

A2.2.2: Microscopy Skills

  • Drawing materials:  drawn with a sharp pencil line on white, unlined paper. 

  • Positioning:  It should be centered on the page to add room for labels 

  • Size:  It should be a large, clear drawing that occupies at least half a page 

  • Labels:  labels should be drawn with straight, horizontal lines with a ruler; labels should form a vertical list & labels should be printed 

  • Technique:  Lines should be clear and not smudged, no shading or coloring 

  • Scale:  Include a labeled scale bar indicating the estimated size of the sample with the correct number of digits & units

  • Accuracy:  drawn only what is asked for

  • Title:  state what has been drawn and what lens power it was drawn under, informative & centered text (larger than others), including the scientific name italicized or underlined

<ul><li><p><strong>Drawing materials:&nbsp;</strong> drawn with a<mark data-color="yellow"> sharp pencil</mark> line on white, unlined paper.&nbsp;</p></li><li><p><strong>Positioning:</strong>&nbsp; It should be centered on the page to add room for labels&nbsp;</p></li><li><p><strong>Size:</strong>&nbsp; It should be a large, clear drawing that occupies at least half a page&nbsp;</p></li><li><p><strong>Labels:</strong>&nbsp; <mark data-color="yellow">labels should be drawn with straight, horizontal lines with a ruler</mark>; labels should form a vertical list &amp; labels should be printed&nbsp;</p></li><li><p><strong>Technique:</strong>&nbsp;<mark data-color="yellow"> Lines should be clear and not smudged, no shading or coloring&nbsp;</mark></p></li><li><p><strong>Scale:</strong>&nbsp; Include a labeled scale bar indicating the estimated size of the sample with the correct number of digits &amp; units</p></li><li><p><strong>Accuracy:</strong>&nbsp; drawn only what is asked for</p></li><li><p><strong>Title:</strong>&nbsp; state what has been drawn and what lens power it was drawn under, informative &amp; centered text (larger than others), including the scientific name italicized or underlined</p></li></ul>
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11

Measure the field of view diameter of a microscope under low power.

A2.2.2: Microscopy Skills

The field of view (FOV) is the diameter of the area visible through the microscope.

Method 1: Use a ruler to measure the diameter. 

Method 2: Diameter (HP FOV) = (Diameter LP x magnification of LP objective)/magnification of HP objective

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12

Calculate the field of view diameter of a microscope under medium or high power.

A2.2.2: Microscopy Skills

The diameter of the field of view under high power often cannot be measured directly, so it must be calculated through an equation:

Diameter (HP FOV) = (Diameter LP x magnification of LP objective)/magnification of HP objective

<p>The diameter of the field of view under high power often cannot be measured directly, so it must be calculated through an equation: </p><p>Diameter (HP FOV) = (Diameter LP x magnification of LP objective)/magnification of HP objective </p>
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13

Use a formula to calculate the magnification of a micrograph or drawing.

A2.2.2: Microscopy Skills

A micrograph is a photo taken down a microscope. The magnification shows how much larger an object appears compared to its real size.

Magnification = (size of the image) ÷ (actual size of the specimen) 

<p>A micrograph is a photo taken down a microscope. The magnification shows how much larger an object appears compared to its real size. </p><p><span style="color: blue">Magnification = (size of the image) ÷ (actual size of the specimen)&nbsp;</span></p>
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14

If given the magnification of a micrograph or drawing, use a formula to calculate the actual size of a specimen.

A2.2.2: Microscopy Skills

Calculating Specimen Size using Magnification: 

  1. Measure a specimen across the widest part of the specimen (using a ruler) 

  2. Measure the length of the scale bar in mm

  3. Calculate how many scale bar lengths make up the specimen (Divide length of specimen by length of scale bar) 

  4. Multiply the scale bar label by the answer found in step 3 

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15

Compare quantitative and qualitative observations.

A2.2.2: Microscopy Skills

Quantitative data is anything that can be counted or measured; numerical data.

Qualitative data is descriptive, referring to things that can be observed but not measured—such as colors.

<p>Quantitative data is anything that can be counted or measured;  numerical data. </p><p>Qualitative data is descriptive, referring to things that can be observed but not measured—such as colors.</p>
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16

Define micrograph, electron micrograph, and scale bar. 

A2.2.2: Microscopy Skills

Micrograph:  a photo taken down a microscope 

Electron micrograph:  a photo taken with electron microscopes

Scale bar:  a horizontal line drawn on the image to show how long the line is in the real specimen. 

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17

Calculate the actual size and magnification of a specimen in a micrograph or drawing.

A2.2.2: Microscopy Skills

Calculating magnification:

  1. Measure the scale bar on the photograph in mm with your ruler 

  2. Convert these mm into the same units as the scale bar 

  3. Divide the image scale bar length (Image size) by the actual scale bar length (actual size) to find magnification

Calculating actual size:

  1. Measure a specimen across the widest part of the specimen (using a ruler) 

  2. Measure the length of the scale bar in mm

  3. Calculate how many scale bar lengths make up the specimen (Divide length of specimen by length of scale bar) 

  4. Multiply the scale bar label by the answer found in step 3 

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18

Define eyepiece graticule and stage micrometer. 

A2.2.2: Microscopy Skills

An eyepiece graticule is a scale inside the eyepiece used to measure the actual size of a structure when using a microscope.

A stage micrometer is a glass slide with a precise scale etched on it.

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19

Measure sizes using an eyepiece graticule and micrometer. 

A2.2.2: Microscopy Skills

  1. Find out how many eyepiece divisions your specimen is. Record the number 

  2. Remove the slide. Place the stage micrometer on microscope stage – DO NOT CHANGE OBJECTIVE 

  3. Rotate the graticule until it’s parallel to the micrometer scale 

  4. Adjust the alignment of the scales so that the 0 values are lined up (or whole number lined up to whole number). 

  5. Find the ratio between eyepiece divisions and micrometers divisions 

  6. Calculate the distance of one eyepiece

  7. Multiply the total number of specimen divisions in specimen by the number calculated in step 6

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20

Define resolution and magnification.

A2.2.3: Developments in microscopy

Resolution:  Making the separate parts of an object distinguishable by eye; the degree of detail visible in an image created by the instrument 

Magnification:  How much larger an object appears compared to its real size 

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21

Compare the functionality of light and electron microscopes.

A2.2.3: Developments in microscopy

Light microscopes can observe living or dead specimens in color, but can only magnify up to 2000x. Electron microscopes can only observe dead things in a fixed plastic material and only in black and white images, but it can magnify up to 1 million times.

Light microscopes can have more flexibility in use, but electron microscopes can magnify something even more.

Light Microscopes

Electron Microscopes 

Simple & easy specimen preparation 

Complex & lengthy specimen preparation 

Magnifies up to 2000x

Magnifies up to 1,000,000x

Specimens may be living or dead

Specimens are dead & must be fixed in a plastic material 

Produces images in color

Only gives black and white images

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22

State a benefit of using fluorescent stains to visualize cell structures. 

A2.2.3: Developments in microscopy

Fluorescent stains bind to specific chemicals, but not others, which can generate particularly bright images.

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23

Outline the process of visualizing specific proteins in cells using immunofluorescence technology. 

A2.2.3: Developments in microscopy

In immunofluorescenc technology, fluorescently-stained antibodies bind to specific target proteins within a cell.

The protein tagged with immunofluorescence can be located and tracked as it moves in the cell.

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24

Outline the process of producing images of cell surfaces using freeze-fracture electron microscopy.  

A2.2.3: Developments in microscopy

In freeze-fracture electron microscopy, cells are rapidly frozen. Then, they are fractured along lines of weakness. The surfaces are etched with a coating, which can be viewed using an electron microscope.

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25

Outline the process of visualizing specific proteins using cryogenic electron microscopy.  

A2.2.3: Developments in microscopy

A solution with the protein is frozen then bombarded with a beam of electrons. Afterward, a computer analyzes patterns of diffraction off the sample to produce an image of the structure.

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26

Outline the function of structures that are common to all cells.   

A2.2.4: Structures common to cells in all living organisms

The plasma membrane separates the interior of the cell from its surroundings and controls what materials are let into the cell.

The cytoplasm is mostly made of water, so many solutes (including salts, fatty acids, sugars, amino acids, and proteins) are dissolved, which allows metabolism to occur.

DNA is used as the genetic material by all living organisms.

Ribosomes catalyze the synthesis of polypeptides during translation (protein synthesis).

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27

Outline the functions of the following structures of an example prokaryotic cell:  cell wall, plasma membrane, cytoplasm, 70s ribosome, and nucleoid DNA.

A2.2.5: Prokaryotic cell structure

The cell wall provides shape and strength, and it allows the cell to withstand turgor pressure without bursting.

The plasma membrane regulates what materials move into and out of the cell, and separates the internal components of the cell from outside environment.

The cytoplasm is a gel-like fluid substance (mostly water with many dissolved molecules) that is the site of metabolic reactions.

The 70s ribosome builds proteins during translation.

Nucleoid DNA is the main DNA of the cell. It is not enclosed in membrane, so it is found freely in the cytoplasm. It is a single loop and not wrapped around proteins (“naked”).

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28

Define the term “naked” in relation to prokaryotic DNA.

A2.2.5: Prokaryotic cell structure

“Naked” means that DNA is not associated with (wrapped around) proteins. DNA in nucleoids and plasmids are naked in prokaryotic cells.

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29

Compare and contrast prokaryotic and eukaryotic cell structure.

A2.2.6: Eukaryotic cell structure

Both prokaryotic cells (archaea and bacteria) and eukaryotic cells (fungi, plant, animal) have ribosomes, DNA, a cell membrane, and a cytoplasm.

Eukaryotes have many more membrane-bound structures with specialized functions including:

  • Nucleus

  • Free and bound 80s ribosomes 

  • Rough endoplasmic reticulum 

  • Smooth endoplasmic reticulum

  • Golgi apparatus

  • Vesicles

  • Lysosome

  • Mitochondria

  • Chloroplast 

  • Vacuole

  • Microtubules & Centrioles 

  • Cytoskeleton 

  • Cilia & Flagella

    Differences Between Plant and Animal Cells

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30

Label a diagram of a eukaryotic cell.

A2.2.6: Eukaryotic cell structure

Eukaryotic Cells | BioNinjaEukaryotic Cell Labeling

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31

Outline the function of the following structures in the eukaryotic cell:  plasma membrane, cytoplasm, 80s ribosomes, nucleus, mitochondria, chloroplast, endoplasmic reticulum, Golgi apparatus, vesicles, vacuoles, lysosomes, cytoskeleton of microtubules and microfilaments.

A2.2.6: Eukaryotic cell structure

The plasma membrane regulates what materials move into and out of the cell, and separates the internal components of the cell from outside environment.

The cytoplasm is a gel-like fluid substance (mostly water with many dissolved molecules) that is the site of metabolic reactions.

The 80s ribosomes catalyze the synthesis of polypeptides during translation (protein synthesis). They can be “free” (floating in the cytoplasm, synthesizing polypeptides used within the cell) or “bound” (attached to the RER, synthesizing polypeptides secreted from the cell, or become integral proteins in cell membrane)

The nucleus contains DNA (in chromosomes) to store information for making proteins via transcription & translation. It has the nucleolus, where ribosome subunits are made.

The rough endoplasmic reticulum (RER), a series of connected flattened membranous sacs, has bound ribosomes that synthesize polypeptides and release it to the inside of the RER.

The smooth endoplasmic reticulum (SER), a series of connected flattened mambranous sacs continous with the RER, synthesizes phospholipids and cholesterol for the formation and repair of membranes. It lacks ribosomes and is not involved with protein synthesis.

The golgi apparatus modifies polypeptides into functional states. It sorts, concentrates, and packs proteins into vesicles. Then, the vesicles are dispatched to either lysosomes, plasma membranes, or secreted to the outside of cell.

Vesicles contain and transport materials within the cells (transport or secretory).

Vacuoles store water and maintain turgor pressure (mechanism the plants use to remain upright).

Lysosomes contain enzymes that work in oxygen-poor and lower pH areas. These enzymes digest large molecules to degrade and reculce the components of the cell’s own organelles (if they are old or damaged, or if the cell is “starving” without nutrients). Lysosomes also digest pathogens, allowing for immune defense.

The cytoskeleton of microtubules and microfilaments help maintain the cell’s shape, organizes the cell parts, and enables cells to move and divide.

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32

List the common processes carried out by all life.

A2.2.7: Processes of life in unicellular organisms

  • Metabolism

  • Homeostasis

  • Excretion

  • Growth

  • Nutrition

  • Movement

  • Reproduction

  • Response to stimuli

(MR MR HENG)

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33

Define metabolism, homeostasis, excretion, growth, nutrition, movement, reproduction and response to stimuli.

A2.2.7: Processes of life in unicellular organisms

  • Metabolism:  Carry out chemical reactions inside the cell

    • Viruses don’t do metabolism → not considered self-sustaining life

  • Homeostasis:  Can keep internal environment/conditions within a tolerable range, despite changes in external environment

    • Water’s high specific heat capacity allows us to maintain homeostasis 

  • Excretion:  Excrete metabolic waste matter; Release waste products that can’t be used (toxic or harmful)

    • Humans:  lungs and kidneys 

    • Plants:  via leaves, roots, stem 

    • Unicellular organisms:  through cell membrane (so cells must have a large surface area:volume ratio)

  • Growth:  grow and/or develop in the lifespan

    • Growth;  Increases in size & mass, irreversible (cannot grow smaller) 

    • Development:  transformation of the organism through its lifespan (like a butterfly)

  • Nutrition:  Obtains energy & matter 

    • Autotrophs:  use external energy sources (usually sun) to synthesize carbon compounds from simple inorganic substances 

      • Plants

    • Heterotrophs:  use carbon dioxide compounds obtained from other organisms to synthesize carbon compounds required 

      • Animals

  • Movement:  adaptations for movement

    • Sessile organisms:  stay in one place 

    • Motile organisms: mobile

  • Reproduction:  Produce offspring (sexually or asexually) 

    • Sexual reproduction:  2 parents, fusion of haploid sex cells from each parent 

      • Meiosis → genetically unique offspring, increases genetic variation 

    • Asexual reproduction:  only one parent 

      • Binary fission or mitosis → All genetically identical offspring

  • Response to stimuli:  Can recognize & respond to changes in environmental conditions 

    • react to changes in the environment 

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34

Describe characteristics of Paramecium that enable it to perform the functions of life.

A2.2.7: Processes of life in unicellular organisms

Paramecium:  eukaryotic organisms, live in freshwater environments, carries out all functions of life

  • Metabolism:  cytoplasm contains dissolved enzymes that catalyze metabolic reactions (like digestion, synthesis of cellular structures) 

  • Reproduction:  the nucleus of the cell divides by mitosis to make another nuclei before the cell reproduces asexually; 2 paramecium can fuse before dividing (to carry out a form of sexual reproduction)

  • Movement:  beats cilia to move in different directions in its environment

  • Response:  can move (through cilia) to respond to changes in the environment 

  • Homeostasis:  excess water is collected in a pair of “contractile vesicles” that swell & expel water through an opening in the cell membrane

  • Excretion:  waste products from digestion are excreted through an anal pore

  • Nutrition:  eats smaller unicellular organisms 

  • Growth:  cell wall grows until it reaches a maximum surface level to volume ratio (then it divides) 

Paramecium: Definition, Structure, Characteristics and Diagram

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35

Describe characteristics of Chlamydomonas that enable it to perform the functions of life.

A2.2.7: Processes of life in unicellular organisms

Chlamydomonas:  eukaryotic organisms; lives in soil, fresh water, oceans, snow on mountaintops; carries out all functions of life

  • Metabolism:  cytoplasm & chloroplast contain dissolved enzymes to catalyze metabolic reactions (digestion, photosynthesis, cellular respiration, synthesis of cellular structures) 

  • Reproduction:  the nucleus divides through mitosis to make another nuclei asexual reproduction; nuclei can also fuse & divide to carry out a form of sexual production 

  • Movement:  has 2 flagella to help it move 

  • Response:  has a sensitive “eyespot” to sense light, uses flagella to move to the light

  • Homeostasis:  excess water is collected in a pair of “contractile vesicles” that swell & expel water through an opening in the cell membrane

  • Excretion:  oxygen (byproduct of photosynthesis, waste product) diffuses out through cell membrane

  • Nutrition:  uses photosynthesis for nutrition (chlamydomonas is an autotroph)

  • Growth:  cell grows until it reaches a maximum surface level to volume ratio (then it divides) 

Chlamydomonas Structure and Reproduction

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36

Compare and contrast the structures of plant, animal and fungal cells with reference to cell walls, vacuoles, chloroplasts, centrioles, cilia and flagella.

A2.2.8: Differences in eukaryotic cell structure between animals, fungi and plants

Plant cells have a cell wall made of cellulose, while Fungal cells have a cell wall made of chitin. Animal cells don’t have a cell wall.

Plant cells have large, permanent vacuoles that take up most of the cell and are responsible for nutrient, waste, and water storage, as well as maintaining turgor pressure. Fungal cells can have large or small vacuoles depending on the species. Animal cells have small, temporary vacuoles that store materials and waste products.

Only plant cells have chloroplasts (and other plastids such as chromoplasts and amyloplasts).

Plant cells and fungi do not have centrioles, while animal cells have centrioles for cell division (mitosis and meiosis).

Plant and fungal cells do not have cilia and flagella, but some animal cells do.

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37

Describe features of skeletal muscle fibers that make them an atypical cell.

A2.2.9: Atypical cell structures in eukaryotes

Skeletal muscle fiber results from the fusion of multiple cells. Thus, there is a single large eukaryotic cell that has multiple nuclei (more than one nucleus).

Muscle Tissue - SCIENTIST CINDY

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38

Describe features of aseptate fungal hyphae that make them an atypical cell.

A2.2.9: Atypical cell structures in eukaryotes

Fungal cells typically have hyphae, which are tubular projections of multicellular fungi that form an underground filamentous network (mycelium), that are separated.

However, fungal hyphae are sometimes not divided not into individual cells (called aseptate hyphae). This forms a continuous cytoplasm along the length of the hyphae.

Aseptate hyphae are not made of clearly defined individual cells, instead they are continuous structures with multiple nuclei.

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39

Describe features of red blood cells that make them an atypical cell.

A2.2.9: Atypical cell structures in eukaryotes

Red blood cells transport oxygen in vertebrates.

During their mutation, red blood cells discard their nucleus and mitochondria. This causes the cells to become very small, increasing their surface area to volume ratio, a characteristic that makes them more efficient in gas exchange and enhances their ability to move through narrow capillary vessels.

Therefore, red blood cells don’t have a nucleus or mitochondria! 

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40

Describe features of phloem sieve tube elements that make them an atypical cell.​

A2.2.9: Atypical cell structures in eukaryotes

Phloem sieve tube elements are specialized cells that are part of the phloem (the tissue that transports organic compounds made during photosynthesis throughout a plant).

During their development, phloem sieve tube elements lose their nucleus and other organelles, which provides more space for the transport of phloem sap.

Thus, the phloem sieve tube elements don’t have a nucleus & other organelles! 

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41

Compare the number of nuclei in aseptate fungal hyphae, skeletal muscle, red blood cells and phloem sieve tube elements.

A2.2.9: Atypical cell structures in eukaryotes

Both aseptate fungal hyphae and skeletal muscle have many nuclei in one large cell.

On the other hand, both red blood cells and phloem sieve tube elements have no nuclei.

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42

Recognize features and identify structures in micrographs of prokaryotic cells (inclusive of the plasma membrane, nucleoid region, ribosomes and cell wall).

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Plasma membrane: pushed against the cell wall

  • Controls the flow of substances in and out of the cell

Nucleoid region: light-colored, irregularly-shaped

  • Contains the single, looped chromosome of DNA

Ribosomes: little black dots

  • Responsible for protein synthesis

Cell Wall: a dark line around the outside of the cell

  • Provides strength and structure

Flagellum are longer than Pili.

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43

Recognize features and identify structures in micrographs of eukaryotic cells (inclusive of the plasma membrane, nucleus, mitochondrion, chloroplast, vacuole, rough and smooth endoplasmic reticulum, Golgi apparatus, secretory vesicle, ribosomes, cell wall, cilia, flagella and microvilli).

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Plasma membrane: a membrane either against a cell wall (plant or fungi) or alone (animal)

  • Controls the flow of substances in and out of the cell

Nucleus: Double membrane, large sphere-ish shape, pores may be visible 

  • Usually surrounded by endoplasmic reticulum

  • Animal cells:  in the center 

  • Plant cells:  pushed up against the wall

  • Stains darker (DNA & chromosomes stain dark)

  • May have lighter regions internally

  • Where the DNA is replicated and transcribed

Mitochondrion: Circular or ovoid shape, have infoldings of membrane called cristae, bound by a double membrane 

  • Tends to stain darker

  • Produces ATP by aerobic cell respiration

Chloroplast: Internal stacks of thylakoid membrane, bound by a double membrane

  • Adapted for photosynthesis 

  • Captures light energy & uses it with water and carbon dioxide to produce glucose

 Vacuole: Clear due to fluid inside

  • Bound by a single membrane called tonoplast 

  • Plant cell vacuoles fill much of cell volume & pushes organelles to side of cell

  • Stores water and/or metabolic waste 

  • Vacuole maintains turgor pressure in plant cells 

Rough endoplasmic reticulum: Series of connected, flattened membranous sacs, lined with dots (ribosomes)

  • Usually found near the nucleus

  • Synthesizes & transports proteins 

  • Has bound ribosomes to synthesize the polypeptide & release it to the inside of RER

Smooth endoplasmic reticulum: Series of connected, flattened membranous sacs 

  • No dots (no ribosomes)

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44

Recognize features and identify the plasma membrane in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • a membrane either against a cell wall (plant or fungi) or alone (animal)

Features:

  • Made of phospholipids

  • Controls flow of substances in and out of the cell

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45

Recognize features and identify the nucleus in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Large sphere-ish shape 

  • Usually surrounded by endoplasmic reticulum

  • Animal cells:  in the center 

  • Plant cells:  pushed up against the wall

  • Stains darker (DNA & chromosomes stain dark)

  • May have lighter regions internally

Features:

  • Double membrane

  • Pores may be visible 

  • Where DNA is replicated & transcribed

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46

Recognize features and identify the mitochondrion in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Circular or ovoid shape 

  • Have infoldings of membrane called cristae 

  • Tend to stain darker 

Features:

  • Bound by a double membrane 

  • Produces ATP by aerobic cellular respiration 

Cellular Respiration

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47

Recognize features and identify the chloroplast in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Internal stacks of thylakoid membrane 

Features:

  • Bound by a double membrane 

  • Found only in plant cells

  • Adapted for photosynthesis 

  • Captures light energy & uses it with water and carbon dioxide to produce glucose 

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48

Recognize features and identify the vacuole in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Clear due to fluid inside

  • Plant cell vacuoles fill much of cell volume & pushes organelles to side of cell

Features:

  • Bound by a single membrane called tonoplast 

  • Stores water and/or metabolic waste 

  • Vacuole maintains turgor pressure in plant cells

Nucleus

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49

Recognize features and identify the rough endoplasmic reticulum in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Series of connected, flattened membranous sacs 

  • Lined with dots (ribosomes) 

  • Usually found near the nucleus

Features:

  • Has ribosomes

  • Synthesizes & transports proteins 

  • Has bound ribosomes to synthesize the polypeptide & release it to the inside of RER

How does rough endoplasmic reticulum differ from smooth endoplasmic  reticulum? | Socratic

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50

Recognize features and identify the smooth endoplasmic reticulum in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Series of connected, flattened membranous sacs 

  • No dots (no ribosomes)

  • Usually found further from the nucleus than the rough ER

Features:

  • Doesn’t have ribosomes

  • Synthesizes phospholipids & cholesterol for the formation & repair of membranes 

Smooth Endoplasmic Reticulum - Definition, Structure & Functions

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51

Recognize features and identify the golgi apparatus in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Flattened stacks 

  • Inside of the stack is clear 

  • Curved 

  • Vesicles around the Golgi Apparatus

Features:

  • Modifies polypeptides into functional state

  • Sorts, concentrates, and packs proteins into vesicles 

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52

Recognize features and identify the secretory vesicles in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Tends to be circular 

  • May be clumped towards one side in secretory cells 

  • Often stain dark due to proteins being stored & transported

Features:

  • Membrane-bound 

  • Contain & transport materials within cells

Transmission electron microscopy images of secretory vesicles in growth...  | Download Scientific Diagram

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53

Recognize features and identify the ribosomes in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Look like tiny dots 

  • Found throughout the cytoplasm 

  • Often the smallest structure visible in electron micrograph

Features:

  • Synthesizes polypeptides during translation (which will become proteins that function within the cell)

Ribosomes And Polyribosomes by Dennis Kunkel Microscopy/science Photo  Library

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54

Recognize features and identify the cell wall in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • A thicker line around the outside of the cell 

  • Tends to be a light gray color 

Features:

  • External to the cell membrane

  • In fungi & plant cells 

  • Helps develop turgor pressure & protects the cell

Cell Wall Micrograph

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55

Recognize features and identify the cilia in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Many extensions projecting from cell membrane

Features:

  • Contain microtubules arranged in a “9+2” pattern (9 pairs of microtubules on the outside and 2 pairs of microtubules in the middle)

  • Regular movement of cilia → cell moving through a solution (typical for many single-celled organisms) 

  • Moving water & its contents across the surface of the cell

Electron Micrograph of a Ciliated Cell of the Trachea

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56

Recognize features and identify the flagella in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Long protrusion from cell membrane 

  • Usually only a few (1-2) are present 

Features:

  • Contain microtubules arranged in a “9+2” pattern (9 pairs of microtubules on the outside and 2 pairs of microtubules in the middle)

  • Used to move a cell through a solution

Bacterial Flagella, EM - Stock Image - C050/4204 - Science Photo Library

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57

Recognize features and identify the microvilli in micrographs of eukaryotic cells.

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Identification:

  • Many short extensions of the cell membrane 

  • Usually shorter & more tightly packed than cili

Features:

  • Doesn’t have a 9+2 arrangement of microtubules 

  • Protrusions of the cell membrane 

  • Increase the surface area for absorption

Microvillus of the small intestine, TEM - Stock Image - C036/7432 - Science  Photo Library

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58

Identify cells in light and electron micrographs as prokaryote, plant, or animal. 

A2.2.10: Cell types and cell structures viewed in light and electron micrographs

Prokaryotic cells do not have a nucleus, only a nucleoid region, and no membrane-bound organelles.

A2.2.10 Identifying parts of prokaryotic cells in electron micrographs -  YouTube

Plant cells have clearly-visible nuclei with a fixed shape and a clear cell wall (light microscope). In an electron microscope, plant cells have large vacuoles that take up most of the space.

Animal cells have clearly-visible nuclei with a fixed irregular shape (no cell wall).

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59

Draw and annotate diagrams of the nucleus as shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Double membrane

  • Clear pores

Annotations:

  • Nucleus contains chromosomes 

  • Chromosomes contain genetic information for cell growth & development

  • Produces RNA required for translation

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60

Draw and annotate diagrams of mitochondrion as shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Draw a smooth outer membrane

  • Highly folded inner membrane

Annotations:

  • Produces ATP by aerobic respiration

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61

Draw and annotate diagrams of chloroplasts as shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Surrounded by a double membrane 

  • A series of interconnected membranes within the chloroplast

Annotations:

  • Contain chlorophyll

  • Carry out photosynthesis for the plant

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62

Draw and annotate diagrams of sap vacuoles shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • A single membrane

  • Takes up most of the space in the center of plane cells

Annotations:

  • Found in plant cells

  • Stores nutrients and wastes, maintains turgor pressure 

    • Turgor pressure:  the force within the cell that pushes the plasma membrane against the cell wall

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63

Draw and annotate diagrams of Golgi appartus shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • A series of curved membranes 

  • Vesicles located around the ends of the membranes

Annotations:

  • Receives proteins from the rough endoplasmic reticulum 

  • Modifies proteins & packages them in vesicles for secretion

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64

Draw and annotate diagrams of rough endoplasmic reticulum shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • A series of tubules with clear dots representing ribosomes 

  • Usually located near the nucleus

Annotations:

  • The site of protein synthesis 

  • Proteins then transported to Golgi apparatus

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65

Draw and annotate diagrams of smooth endoplasmic reticulum shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • A series of tubules without any ribosomes attached 

  • Usually located near the plasma membrane, away from the nucleus

Annotations:

  • Production of lipids

  • Detoxification of harmful substances

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66

Draw and annotate diagrams of chromosomes shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Visible during mitosis and meiosis 

  • Initially appear as 2 chromatids (prophase) but later separate into individual chromosomes (anaphase)

Annotations:

  • Located in the nucleus 

  • DNA wrapped around histone proteins 

  • Contain genetic information for cell growth & development

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67

Draw and annotate diagrams of a cell wall shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • A thick, dark line around the boundary of the cell

Annotations:

  • Provides strength and structure to plant cells

  • Maintains turgor pressure (prevents cell from bursting)

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68

Draw and annotate diagrams of the plasma membrane shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Animal cells: The outer boundary, represent by a thin line

  • Plant cells: Pushed against the thick cell wall, Can be labelled as the innermost part of the cell wall

Annotations:

  • Controls what enters & exits the cell

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69

Draw and annotate diagrams of secretory vesicles shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • Small enclosed membranes 

  • Represent with small circles, with at least one fusing with the plasma membrane

Annotations:

  • Transport proteins from the Golgi apparatus to the plasma membrane (where they’re secreted by exocytosis) 

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70

Draw and annotate diagrams of microvilli shown in electron micrographs. Include the functions in annotations. 

A2.2.11: Drawing and annotation based on electron micrographs

Drawing:

  • finger-like projections from the cell 

  • Present on one surface of the cell

Annotations:

  • Increase the surface area of the cell 

  • Increases available surface area for transport of materials

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71

Explain the origin of mitochondria with reference to endosymbiosis

A2.2.12: Origin of eukaryotic cells by endosymbiosis

Mitochondria have have been an aerobic bacteria that used oxygen in aerobic cellular respiration. A larger, host cell ingested aerobic cells. Its fluid membrane allowed the bacteria to enter, with an outer membrane developing as it entered the bacteria. However, some bacterial cells may have remained alive and continued to perform respiration within the host cell (instead of being digested). This developed a close, mutually beneficial relationship between the bacteria and host cell (symbiosis). They may have become so dependent on each other that they became one cell. The bacteria cell went through a series of changes (specialized) so that the larger cell could have ATP, and the bacteria cell developed into a mitochondria.

IB Biology - The Origins of Cell - IB biology cell theory Endosymbiotic Theory

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72

Explain the origin of chloroplast with reference to endosymbiosis.

A2.2.12: Origin of eukaryotic cells by endosymbiosis

Chloroplasts may have originally been photosynthetic bacteria. A larger cell may have ingested these bacteria. Its fluid membrane allowed the bacteria to enter, with an outer membrane developing as it entered the bacteria. but some bacterial cells have remained alive, instead of being digested. The bacteria continued to perform photosynthesis within the host cell. This developed a close, mutually beneficial relationship between the bacteria and host cell (symbiosis). They may have become so dependent on each other that they became one cell.

IB Biology - The Origins of Cell - IB biology cell theory Endosymbiotic Theory

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73

Describe the genetic, structural and behavioral evidence for the endosymbiotic theory.

A2.2.12: Origin of eukaryotic cells by endosymbiosis

The endosymbiotic theory explains how a cell could progress from a simple, non-compartmentalized prokaryote into a complex, highly-compartmentalized eukaryote

Genetic evidence:

  • Mitochondria and chloroplasts both have circular naked DNA like that of prokaryotic cells

    • But eukaryotic cells have linear DNA wrapped around histone proteins

  • Mitochondria and chloroplasts share common DNA sequences with prokaryotes

Structural evidence:

  • Mitochondria and chloroplasts are the same approximate size and shape as prokaryotes.

  • Mitochondria and chloroplasts have a double membrane

    • Their own cell membranes (inner membrane) + the cell membrane from when it was engulfed by the host cell (outer membrane)

  • Mitochondria and chloroplasts both have their own 70s ribosomes

Functional evidence:

  • Mitochondria and chloroplasts move independently within the eukaryotic cell

  • Mitochondria and chloroplasts produce their own proteins with their own 70s ribosomes

  • Mitochondria and chloroplasts reproduce independently of the host cell (through a process similar to binary fission)

  • Mitochondria and chloroplasts are inhibited by antibiotics, like prokaryotes are

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74

Outline the benefits of cell specialization in a multicellular organism.

A2.2.13: Cell differentiation as the process for developing specialized tissues in multicellular organisms.

Cell specialization in a multicellular organisms allow cells to be less susceptible to predation. It also makes DNA less likely to be damaged by natural or environmental mutagens. Genes are also protected from damage from mutagens because fewer genes are expressed.

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75

Define differentiation.

A2.2.13: Cell differentiation as the process for developing specialized tissues in multicellular organisms.

Differentiation is the development of specialized structures and functions in cells.

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76

Describe the relationship between cell differentiation and gene expression.​​

A2.2.13: Cell differentiation as the process for developing specialized tissues in multicellular organisms.

Cell differentiation occurs when cell types express different genes.

Proteins bind to specific base sequences in DNA to regulate differentiation in gene expression.

Different tissues are made from cells that have differentiated (because they express different genes) to have different structures and functions.

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77

State that multicellularity has evolved repeatedly.

A2.2.14: Evolution of multicellularity

Multicellularity has evolved repeatedly.

It has evolved independently many times in eukaryotes.

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78

List groups of organisms that are multicellular.

A2.2.14: Evolution of multicellularity

  • All plants

  • All animals

  • Most, but not all, fungi

  • Many, but not all, algae

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79

Outline the steps in the evolution of multicellularity.

A2.2.14: Evolution of multicellularity

First, single cells clustered together to form cellular clusters. This may have occurred when a group of independent cells came together or when daughter cells failed to separate when a unicellular organism divided (forming an aggregate of identical cells).

After that, cells in the cluster differentiated for specialized functions.

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