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What are the main domains of microorganisms?
Bacteria, Archea, Fungi, and Protozoa
Describe Bacteria
Prokaryotic
Unicellular
No organized Nucleus
Binary Fission
Describe Archea
Live in extreme environments
Methanogens, extreme halophiles, and thermophiles
No human disease
Describe Fungi
Eukaryotes
Distinct Nucleus
Cell wall of Chitin
Unicellular (yeast) or Multicellular (mold)
Describe Protazoa
Eukaryotes
Unicellular
Some are photosynthetic
Some cause disease like amebic dysentery
What are the major milestones of Microbiology
1876- Koch proves bacteria cause disease
1884- Gram develops stains
1928- Fleming Discovers penicillin
Modern developments?
Recombinant DNA tech
Biotech applications
Study of emerging infectious diseases
Microbes in human health and ecology
What are good things microbes do?
Make food
recycle sewage
vitamin synthesis
medical treatmens=ts
What are the 3 domains of life?
Bacteria
Archea
Eukarya
Order of Taxonomic Hierarchy
Drunk King Phillip Came Over From Great Spain
Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species
Key differences between bacteria and archea?
Both are prokaryotic with no nucleus
Archea has no peptidoglycan but has pseudomurein
Archea live in extreme areas
Both are single celled, lack membranes-bound nucleus, but arches have distinct cellular and genetic characteristics that set them apart
What are the main types of microorganisms studied in microbiology?
bacteria
archaea
fungi
protozoa
algae
viruses
and multicellular animal parasites
What disproved the theory of spontaneous generation?
Pasteur used s-beaker in 1861 to prove that organisms do not arise spontaneously.
Curve allowed air but not microorganisms to enter which resulted in the broth not becoming cloudy for an extended period of time.
Led to aseptic technique development
What must be used to view microorganisms?
Microscopes
What are the types of microscopes?
Compound Light
Specialized (dark field, phase-contrast, fluorescence, and electron microscopes)
Describe Compound light?
Basic microscopes resulting in picture on white background.
light→ condenser→ specimen→ objective lens→ optic lens
Describe dark field?
Light images against dark backgrounds
Describe Phase contrast?
Visualize internal details through refractive index differences
Describe Fluorescence?
Use ultraviolet light to see specific structures
Describe Electron microscopes?
Extremely high magnification and detailed images
Light goes top to bottom on these
What is a simple stain?
Uses a single dye to increase contrast.
What is a Differential stain?
Separates bacteria into groups (Gram Stain)
What is a Special stain?
Highlight specific structure like flagella, capsules, or spores.
What is a Gram stain?
Separates bacteria into Gram Positive or Gram Negative based on cell wall composition.
What is Acid-Fast Staining?
Uses lipid-based staining to identify specific bacteria like Mycobacterium.
What is a transmission electron microscope (TEM)?
Requires dehydrated, ultra thin, specimens (usually laid with some form of sense metal like gold or silver).
What is a scanning electron microscope? (SEM)
Provides detailed 3D image of surface.
What is a scanned probe microscope?
Probes alter surface.
What are the two main sets of lenses in a compound light microscope?
Objective which directly magnifiers the specimen
Ocular which magnifies image (final view)
How to calculate total magnification?
Objective x Ocular (usually always 10x)
What are the objective lens magnifications?
Scanning lens- 4x
Low dry lens- 10x
High dry lens- 40x
Oil immersion- 100x
What is immersion oil used for?
It prevents the spreading of light as it hits the specimen which allows for high resolution images.
Key difference between brightfieqld and dark field?
Brightfield- image against bright background
Darkfield- image against dark background
What type of microscope uses ultraviolet light instead of visible light?
Flouorescence microscopes
Prokaryote cell type?
Prokaryotes- simple no membrane bound nucleus
Small cells (0.2-1.0um)
Single circular chromosome
no histones or organelles
bacteria and archaea
Eukaryotes cell type?
Larger structured cells
Paired chromosomes in nuclear membrane
Multiple organelles (like mitochondria)
Animals, plants, fungi
What are the key structural differences between prokaryotes and eukaryotes?
Pro-
Composed of peptidoglycan which provides structure and prevents osmotic lysis (they don’t fall to penicillin)
Euk-
has no/ less peptidoglycan (should fall to penicillin)
both have selective permeability.
What is the endosymbiotic theory?
The first cell was prokaryotic. It consumed another prokaryote which created mitochondria and chloroplasts which then evolved further.
Prokaryotes>
No membrane bound nucleus
Nucleoid is “open concept” containing one circular chromosome
Have 70s ribosome (-50s and 30s)
Have peptidoglycan cell walls
Eukaryotes>
Membrane enclosed nucleus
Paired chromosomes
Organized with histones
Multiple organelles (mitochondria, Er, Golgi A.)
80s Ribosomes (40s and 60s)
Carbohydrate cell wall (chitin usually)
no peptidoglycan
Basic bacteria shapes?
bacillus- rods
coccus- PERFECT circles
Spiral
>Spirillum- waves
>Vibrio- V or boomerang
>Spirochete- tight swirls
Bacteria arrangement variations?
Pairs- diplo…
Clusters- staphylo…
Chains- strepto…
What does the cell wall do?
Structural support and osmotic stability
What is catabolism?
the break down of molecules to release energy
What is anabolism?
the use of energy to build complex structures
What is the enzymatic process?
Enzymes are critical biological catalysts that facilitate chemical reactions.
apoenzyme(protein portion) + cofactor(non protein activator) = holoenzyme(complete enzyme)
What is cellular respiration?
Glycolosis- glucose breakdown to make atp
Krebs cycle- oxidizes acetyl CoA
Electron transport chain- generates majority of cellular atp
Photoautotrouph
energy- light
carbon- CO2
Photoeterotroph
energy- light
carbon- organic compounds
Chemoautotroph
energy- cheical
carbon- CO2
Chemoeterotroph
energy- chemical
Carbon- organic compounds
What is fermentation?
The process of producing energy without the use of oxygen
What is anaerobic respiration?
Uses alternative electron receptors.
What are the two key players in metabolism?
catabolism- provides energy and building blocks through oxidizing molecules
anabolism- uses energy and building blocks to build large molecules (synthesizes macromolecules)
What are are the holoenzyme components?
Apoenzyme- protein portion which is initially inactive
Cofactor- Nonprotein component that acts as activator
Coenzyme- specific organic cofactor
Stages of cellular respiration?
1 Glycolysis-
occurs in cytoplasm
oxidizes glucose to pyruvic acid
produces 2atp and 2 NADH
first stage of carbohydrate catabolism
2 Pyruvic acid id oxidized and decarboxylated (turns into acetyl CoA)
3 Krebs cycle-
Occurs in mitochondrial matirx
oxidizes acetyl CoA
produces NADH and FADH2
Generates 2 ATP through substrate level phosphorylation
4 Electron Transport Chain-
ATP is produced through oxidative phosphorylation
occurs in mitochondrial membrane
Two types of fermentation?
Alcohol fermentation- produces ethanol and CO2
final electron acceptor is an organic molecule
Lactic acid Fermentation- produces lactic acid
homolactic acid- only lactic acid
heterolactic acid- lactic acid and other compounds