which standard deviation to use for effect size (when there is a choice):
- ideally, we would use the population standard deviation, but this is rarely known
- if there is a control group, or a 'baseline' group, can use the standard deviation for this group
- if there is no control group, we should combine ('pool') our two samples of data and use the average (pooled) variance to obtain a single standard deviation, and use that.
Pooled variance =
for standard deviation S1 and S2, we have variances S2/1 and S2/2.
average pooled variance = (S2/1 + S2/2) / 2
Standard deviation using pooled variance = square root of average pooled variance