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discuss T cell trafficking and surveillance for pathogens
T cells will leave the blood and traffic into the lymph nodes and exit unless antigen is encountered
pathogens stay in the lymph nodes presented by APC like DCs
discuss the differences between naive and effector T cells
naive
mature from the thymus from positive/negative selection and haven’t encountered their antigen
circulate through blood and lymph nodes
effector
activated by APC and undergo proliferation to generate specific clones
proliferate, make cytokines and cytoxicity- help B cells too
why does proliferation occur and when does it happens?
after a naive T cells encounters an antigen, it proliferates as only a few T cells recognise a specifc antigen
proliferation generates clone to make a good immune response to eliminate it
types of APCs
dendritic cells- professional antigen presentation- in the lymph nodes and spleen. present to naive T cells
macrophages- interact with effector T cells usually- can be in the lymph nodes and tissues- less effective and don’t initiate early adaptive response
B cells
why are DCs the most effective APC? 5
highly phagocytic- engulf them efficiently
larg surface area- have spikes to increase chance of antigen encounter
tissue residency- samples antigens early and locally
migration- can transport them to the lymph nodes
have Fc receptors and target opsonised pathogens
what are the jobs of a dendritic cell? 4
capture pathogen- takes a sample of pathogen and brings it to the nearest lymph node and waits for T cell to recognise the antigen
DCs stay in resident tissues all over the body and continuously samples and phagocytoses and remains stationary until activation.
chemokine regulation- once in the lymph nodes releases chemokines like CXCL7 to go to the lymph node and stop phagocytosing
APC maturation- immature good at phagocytosis but not good at activating T cells- upon pathogen capture up regulate MHC molecules, express CD80/86 for T cell activation, detects
what are the 3 signals naive T cells need for activation?
APC via MHC
costimuatlion- need CD28(T cell) binding to B7(CD80/86) to act as confirmation and shows what type of pathogen it is
cytokine environment- determines T cell differentiation depending on the type of pathogen
discuss how and where pathogen replicate, what response is needed and how does this affect antigen presentation and MHC
viruses- inside host cytoplasm. viruses are intracellular and are hidden from antibodies. requires cytotoxic T lymphocytes to kill infected cells(MHCI)
mycobacteria like TB- replicate within macrophages. intracellular but in vesicles and need activated macrophages and Th1 response
extracellular bacteria- replicate outside the host cell. antibodies are soluble and reach them, and complement can neutralise them- MHC II(CD4)
what are bacteria vs viruses presented on?
viruses- MHC I- CD8
bacteria-MHC II-CD4
structure of MHC II molecules
2 chains-
alpha 1 and alpha 2- anchored in the membrane and short cytoplasmic chain- doesn’t signal
beta chain- beta 1 and beta 2- anchored in the membrane
have peptide binding groove- where peptides bind
2 alpha helices and makes a wall and has beta pleated sheets
how do DC process and present on MHC II?
sampling by APC into endosomes
MHC II is made in the ER and the invariant chain(not alpha or beta, stops it from binding self) guides MHC II to the ER where the bacterial peptides are
endosome fuses with MHC II vesicle and V-ATPASE acidification breaks down bacteria into small peptide fragments and removes most of the invariant chain leaving CLIP in the groove
HLA-DM removes CLIP and allows peptides from bacteria to bind
peptide-MHC II complex moves to the cell surface and presents it