Ch 15 Vocab: Gene Expression Regulation

activator

A protein that binds to DNA and stimulates gene transcription. In prokaryotes, activators bind in or near the promoter; in eukaryotes, activators generally bind to control elements in enhancers.

alternative RNA splicing

A type of eukaryotic gene regulation at the RNA-processing level in which different mRNA molecules are produced from the same primary transcript, depending on which RNA segments are treated as exons and which as introns.

complementary DNA (cDNA)

A double-stranded DNA molecule made in vitro using mRNA as a template and the enzymes reverse transcriptase and DNA polymerase. A cDNA molecule corresponds to the exons of a gene.

control element

A segment of noncoding DNA that helps regulate transcription of a gene by serving as a binding site for a transcription factor. Multiple control elements are present in a eukaryotic gene's enhancer.

corepressor

A small molecule that binds to a bacterial repressor protein and changes the protein's shape, allowing it to bind to the operator and switch an operon off.

cyclic AMP (cAMP)

Cyclic adenosine monophosphate, a ring-shaped molecule made from ATP that is a common intracellular signaling molecule (second messenger) in eukaryotic cells. It is also a regulator of some bacterial operons.

differential gene expression

The expression of different sets of genes by cells with the same genome.

DNA methylation

The presence of methyl groups on the DNA bases (usually cytosine) of plants, animals, and fungi. (The term also refers to the process of adding methyl groups to DNA bases.)

DNA microarray assay

A method to detect and measure the expression of thousands of genes at one time. Tiny amounts of a large number of single-stranded DNA fragments representing different genes are fixed to a glass slide and tested for hybridization with samples of labeled cDNA.

enhancer

A segment of eukaryotic DNA containing multiple control elements, usually located far from the gene whose transcription it regulates.

epigenetic inheritance

Inheritance of traits transmitted by mechanisms not directly involving the nucleotide sequence of a genome.

histone acetylation

The attachment of acetyl groups to certain amino acids of histone proteins.

inducer

A specific small molecule that binds to a bacterial repressor protein and changes the repressor's shape so that it cannot bind to an operator, thus switching an operon on.

in situ hybridization

A technique using nucleic acid hybridization with a labeled probe to detect the location of a specific mRNA in an intact organism.

nucleic acid probe

In DNA technology, a labeled single-stranded nucleic acid molecule used to locate a specific nucleotide sequence in a nucleic acid sample. Molecules of the probe hydrogen-bond to the complementary sequence wherever it occurs; radioactive, fluorescent, or other labeling of the probe allows its location to be detected.

operator

In bacterial and phage DNA, a sequence of nucleotides near the start of an operon to which an active repressor can attach. The binding of the repressor prevents RNA polymerase from attaching to the promoter and transcribing the genes of the operon.

operon

A unit of genetic function found in bacteria and phages, consisting of a promoter, an operator, and a coordinately regulated cluster of genes whose products function in a common pathway.

regulatory gene

regulatory gene

A gene that codes for a protein, such as a repressor, that controls the transcription of another gene or group of genes.

repressor

A protein that inhibits gene transcription. In prokaryotes, repressors bind to the DNA in or near the promoter. In eukaryotes, repressors may bind to control elements within enhancers, to activators, or to other proteins in a way that blocks activators from binding to DNA.

reverse transcriptase–polymerase chain reaction (RT-PCR)

A technique for determining expression of a particular gene. It uses reverse transcriptase and DNA polymerase to synthesize cDNA from all the mRNA in a sample and then subjects the cDNA to PCR amplification using primers specific for the gene of interest.

RNA interference (RNAi)

A technique used to silence the expression of selected genes. RNAi uses synthetic double-stranded RNA molecules that match the sequence of a particular gene to trigger the breakdown of the gene's messenger RNA.

small interfering RNAs (siRNAs)

One of multiple small, single-stranded RNA molecules generated by cellular machinery from a long, linear, double-stranded RNA molecule. The siRNA associates with one or more proteins in a complex that can degrade or prevent translation of an mRNA with a complementary sequence. In some cases, siRNA can also block transcription by promoting chromatin modification.