PCL201

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Pharmacology (lec 1)

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Pharmacology (lec 1)

  • science of drugs

    • study of drug action (pharmacodynamics) and fate (pharmacokinetics) in the body (desirable effects)

  • basic and clinical biomedical science

Important distinctions:

  • Pharmacy

  • Therapeutics

  • Toxicology: a science focusing on chemicals w/ undesirable biological activity

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Pharmacology purposes and aims (lec 1)

Specific purposes:

  • identify drug targets and understand how drugs work by interacting w/ drug targets

  • understand how drugs are handled/modified by the living organism

broad aims:

  • gain insight into normal and abnormal function

  • improve therapeutic intervention by doctors

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Toxicology purpose (lec 1)

  • looks at how xenobiotics (drugs, chemicals: externally brought into body) are handled and interact w/ targets to cause deleterious effects and reduce these effects (to improve drug)

  • studying organochlorine contaminants (ex: thalidomide) and pesticides

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Pharmacology history: Ancient civilizations (lec 1)

  • medicinal and toxic plants, preparations from mineral and animal sources

  • China: Pen Ts’ao (Great Herbal, 2735 BC)

    • 40 volumes of medicinal and toxic plants, antidotes

  • Egypt: Ebers Papyrus (1500 BC)

    • >700 drugs in >800 formulas

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Pharmacology history: Greek and Roman empires (lec 1)

  • Hippocratic Corpus (5th c. BC - 2nd c. AD)

    • ~400 drugs, primarily from vegetable origin

    • rejected divine/spiritual causes and treatment of disease

    • doctrine of the 4 Humors (blood, phlegm, black bile, and yellow bile)

  • De Materia Medica (Pedanius Dioscorides, 50-70 AD)

    • >600 medicinal plants

    • each disease has a unique cause for which there is a specific remedy

    • remained in use until ~1600s

    • considred to be basis of modern medecine

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Pharmacology history: Medieval times and islam (lec 1)

  • The Canon of Medicine (Avicenna, c. 1025)

    • set the standards for medicine, an authoritative reference as late as the 17th c.

    • translated to many langs.

    • list of 800+ drugs/remedies

    • foundation for experimental testing of drugs

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Pharmacology history: late 18th-19th c. (lec 1)

  • advances in physiology, pathology, and chemistry provided the foundation for pharmacology

    • focus was on isolating and understanding the effects of natural substances (focus on botanicals)

    • examples:

      • Digitalis

      • Morphine

      • Salicin

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Digitalis from purple foxglove (lec 1)

  • Digitalis Purpurea = purple foxglove

  • used to treat “dropsy” (edema from congestive heart failure) (18th c. England)

  • digitalis extract (Digitoxin and Digoxin) contain cardiac glycosides (used to treat cardiac arrhythmias and heart failure)

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Morphine from Opium poppy (lec 1)

  • Papaver Somniferum = Opium poppy

  • Opium (sap of poppy) = painkiller

  • morphine = 1st active alkaloid discovered from opium poppy

  • morphine used for acute and chronic severe pain

  • morphine is a precursor to multiple synthetic and semi-synthetic opiates

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Salicin from Willow Bark (lec 1)

  • Salix alba = white willow

  • willow tree bark and leaves powder used for headache, pain, fever (Hippocrates, 5th c. BC)

  • 1828: salicin isolated from willow bark

  • 1838: salicylic acid purification (active metabolite of acetylsalicylic acid (Aspirin) (Aspirin becomes salicylic acid)

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Pharmacology history: mid 19th c. (lec 1)

  • offical birth of pharmacology as a separate science focused on studying the interaction of chemicals w/ living systems (1847)

  • fathers of pharmacology: Rudolf Buchheim + Oswald Schmiedeberg

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Pharmacology history: Early 20th c.: mech of drug action: receptor theory (lec 1)

  • Langley and Ehrlich proposed the concept that receptors mediate drug action (1905-1907)

  • Clark introduced the receptor occupancy model describing the relationship btwn drug concentration and effect (1933)

  • continued focus on isolating and understanding the effects of natural and endogenous substances, aided by strides in synthetic chem, microbiology, and biochem in the 20th c.

    • Ach (1906), oxytocin (1906), histamine (1907), insulin (1922), penicillin (1928), streptomycin (1943)

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What is a drug? (lec 1)

  • an external chemical substance (other than those essential for normal function) that can exert a biochem/physiological effect in a living org, whether therapeutic or not

  • can be natural (morphine), semi-synthetic (hydromorphone) or synthetic (fetanyl)

Official definition by FDA:

  • drugs defined by their intended use

    • “intended for use in the diagnosis, cure, mitigation, treatment, or prevention of disease

    • “intended to affect the structure or any function of the body of man or other animals”

  • drugs regulated by:

    • FDA in US

    • Therapeutic products directorate (TPD) of Health Canada

<ul><li><p>an <strong><u>external chemical substance</u></strong> (other than those essential for normal function) that can <strong><u>exert a biochem/physiological effect</u></strong> in a living org, whether <strong><u>therapeutic or not</u></strong></p></li><li><p>can be natural (morphine), semi-synthetic (hydromorphone) or synthetic (fetanyl)</p></li></ul><p>Official definition by FDA:</p><ul><li><p>drugs defined by their <strong><u>intended use</u></strong></p><ul><li><p>“intended for use in the <strong><u>diagnosis, cure, mitigation, treatment, or prevention of disease</u></strong>”</p></li><li><p>“intended to affect the structure or any function of the body of man or other animals”</p></li></ul></li><li><p>drugs regulated by:</p><ul><li><p>FDA in US</p></li><li><p>Therapeutic products directorate (TPD) of Health Canada</p></li></ul></li></ul>
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Things that might be considered drugs (lec 1)

  • dietary components and/or essential nutrients when given in a high dose used for treatment of disease

  • endogenous molecules when administered or in high doses

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Drug origins (lec 1)

  • drugs can be classified by origin:

    1. natural compounds (in crude preparations/pure)

    2. semi-synthetic

    3. synthetic

    4. biologics

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Natural preparations (crude/galenicals: extract by hot water) (lec 1)

  • Plant sources:

    • Opium

    • Digitalis

    • Atropa Belladonna tincture (evening nightshade)

    • Klamath Weed (St. Johns Wort)

    • Coffee

  • Animal sources:

    • Puffer fish venom (contains Tetrodotoxin)

    • Desiccated thyroid (contains thyroid hormone)

    • Extract from pancreatic islet cells (contains insulin)

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Pure compounds from natural sources (lec 1)

  • ex: Paclitaxel (Taxol) from bark Pacific Yew Tree in late 1960s

    • has anti-cancer activity

    • b4 1990s: almost all paclitaxel was harvested from bark

      • later discovered to be produced by endophytic fungi in bark

    • Early 1990s: semi-synthetic prod. from another compound found in Yew tree needles emerged

    • today: Paclitaxel is directly purified from a plant cell line propagated in fermentation tanks w/ fungi

<ul><li><p>ex: Paclitaxel (Taxol) from bark Pacific Yew Tree in late 1960s</p><ul><li><p>has anti-cancer activity</p></li><li><p>b4 1990s: almost all paclitaxel was harvested from bark</p><ul><li><p>later discovered to be produced by endophytic fungi in bark</p></li></ul></li><li><p>Early 1990s: semi-synthetic prod. from another compound found in Yew tree needles emerged</p></li><li><p>today: Paclitaxel is directly purified from a plant cell line propagated in fermentation tanks w/ fungi</p></li></ul></li></ul>
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Semi-synthetic compounds (lec 1)

  • produced by chem modification of pure compounds

    • improvement of the parent compound w/ respect to potency, specificity, side effects, PK parameters

    • ex: Hydromorphone (Dilaudid) from morphine

      • increased potency and lipophilicity

      • more rapid onset of action, altered adverse effect profile

      • hydrogenation of ketones

<ul><li><p>produced by chem modification of pure compounds</p><ul><li><p>improvement of the parent compound w/ respect to potency, specificity, side effects, PK parameters</p></li><li><p>ex: Hydromorphone (Dilaudid) from morphine</p><ul><li><p>increased potency and lipophilicity</p></li><li><p>more rapid onset of action, altered adverse effect profile</p></li><li><p>hydrogenation of ketones</p></li></ul></li></ul></li></ul>
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Synthetic compounds (lec 1)

  • most drugs

  • range from serendipitous discoveries (ex: barbital) to deliberate synthesis based on predicted chem properties/known molecular features necessary for drug action

  • improve drug and/or customize design

  • reduce cost

<ul><li><p>most drugs</p></li><li><p>range from serendipitous discoveries (ex: barbital) to deliberate synthesis based on predicted chem properties/known molecular features necessary for drug action</p></li><li><p>improve drug and/or customize design</p></li><li><p>reduce cost</p></li></ul>
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Biologics (lec 1)

  • monoclonal antibodies, vaccines, recombinant proteins

    • created by biological processes

    • may be extracted from human/animal tissues, tissue cultures or produced by recombinant DNA tech

    • more complex than small-molecule drugs

    • can be expensive to make

<ul><li><p>monoclonal antibodies, vaccines, recombinant proteins</p><ul><li><p><strong><u>created by biological processes</u></strong></p></li><li><p>may be extracted from human/animal tissues, tissue cultures or produced by recombinant DNA tech</p></li><li><p>more complex than small-molecule drugs</p></li><li><p>can be <strong><u>expensive</u></strong> to make</p></li></ul></li></ul>
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Drug action mechs (lec 1)

  • drugs can act as/by:

    • agonists

    • antagonists

    • allosteric modulators

    • enzyme inhibitors

    • affecting lvls of endogenous compounds

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Drug generations (lec 1)

  • Research + Development continues to improve drug by customizing design

  • ex: H1 antagonists (antihistamines for allergy)

    • Loratidine less lipophilic so can’t pass BBB

<ul><li><p>Research + Development continues to improve drug by customizing design</p></li><li><p>ex: H1 antagonists (antihistamines for allergy)</p><ul><li><p>Loratidine less lipophilic so can’t pass BBB</p></li></ul></li></ul>
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Clinical drug development (lec 1)

  • cost increases as process moves on (most in clinical trials)

<ul><li><p>cost increases as process moves on (most in clinical trials) </p></li></ul>
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Drug nomenclature (lec 1)

  • chemical name (chem structure)

  • drug company code

  • generic name (non marketed name and consistent across countries and companies)

  • trade name (trademark)

  • street name

<ul><li><p>chemical name (chem structure)</p></li><li><p>drug company code </p></li><li><p><strong><u>generic name (non marketed name and consistent across countries and companies)</u></strong></p></li><li><p>trade name (trademark)</p></li><li><p>street name</p></li></ul>
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Patent law (lec 1)

  • way for companies to make money off drug development

  • country specific

  • no other company can market chemical compound for 20 yrs

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Bioequivalence (lec 1)

  • 2 diff drug preparations w/ equal dosage form produce similar pharmacokinetic measures

  • ex: Loestrin and Microgestin

    • pharmacokinetics curve must be 80-120% similar

<ul><li><p>2 diff drug preparations w/ equal dosage form produce similar pharmacokinetic measures</p></li><li><p>ex: Loestrin and Microgestin</p><ul><li><p>pharmacokinetics curve must be 80-120% similar</p></li></ul></li></ul>
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Overview of Pharmacokinetics and pharmacodynamics (lec 2)

knowt flashcard image
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What is Pharmacokinetics (PK) (lec 2)

  • “what the body does to the drug”

  • a study of the kinetics (time course) of drug conc and the process involved

    • mathematical relationsips btwn drug dosing + resulting drug [ ]

  • Quantitatively describe the various steps of drug disposition in the body: ADME

  • affected by:

    • physiochem properties of drug

    • anatomy and physiology of individual

  • linked to PD by plasma conc

<ul><li><p>“what the body does to the drug”</p></li><li><p>a study of the kinetics <strong><u>(time course) of drug conc</u></strong> and the process involved</p><ul><li><p>mathematical relationsips btwn drug dosing + resulting drug [ ]</p></li></ul></li><li><p>Quantitatively describe the various steps of drug disposition in the body: ADME</p></li><li><p>affected by:</p><ul><li><p>physiochem properties of drug</p></li><li><p>anatomy and physiology of individual</p></li></ul></li><li><p>linked to PD by plasma conc</p></li></ul>
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Pharmacokinetics: ADME (lec 2)

Absorption:

  • movement of the drug from its site of administration into the bloodstream

  • extent of absorption = bioavailability: fraction of a dose that makes it to systemic circulation in its unchanged form

Distribution:

  • spreading of the drug throughout the body once absorbed

  • drug distributes from systemic circulation (vasculature) to intracellular and interstitial fluid

Metabolism:

  • transformation of the drug to more hydrophilic metabolites (primarily in the liver)

Excretion:

  • removal of drug from the body (primarily in urine + feces)

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<p>Pharmacokinetic processes ADME (lec 2)</p>

Pharmacokinetic processes ADME (lec 2)

  • ADME determines the time course of drug conc in blood and tissues following drug administration

  • PK quantitatively describes the various steps of drug disposition and ADME

  • used to calculate and understand the relationships btwn drug dosage regimen and resulting drug concs.

<ul><li><p>ADME determines the time course of drug conc in blood and tissues following drug administration</p></li><li><p>PK quantitatively describes the various steps of drug disposition and ADME</p></li><li><p>used to calculate and understand the relationships btwn drug dosage regimen and resulting drug concs.</p></li></ul>
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Pharmacodynamics (lec 2)

  • “what the drug does to the body”

  • study of effects and mechs of therapeutic and toxic action of a drug

  • Binding: interaction w/ target (receptors, enzymes, molecules)

  • Mech of action: changes in signaling (cascades/alteration of pathways)

  • effect: physiological/biochemical changes

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Drug target interactions (lec 2)

  • irreversible drug-receptor interactions (cov/ionic) aren’t common and occur via strong chem bonds (aspirion/anti-tumor drugs)

    • not always desirable

  • most drug-receptor interactions are reversible via weak chem bonds (hydrophobic/van der waals)

<ul><li><p>irreversible drug-receptor interactions (cov/ionic) aren’t common and occur via strong chem bonds (aspirion/anti-tumor drugs)</p><ul><li><p>not always desirable</p></li></ul></li><li><p>most drug-receptor interactions are reversible via weak chem bonds (hydrophobic/van der waals)</p></li></ul>
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The “lock and key” (lec 2)

  • agonists: mimics natural compound

<ul><li><p>agonists: mimics natural compound</p></li></ul>
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Nature of the interaction (lec 2)

  • receptors are proteins/enzymes that participate in intracellular communication via chem signals

  • ligands: signaling molecules, can be endo/exo -genous (neurotransmitter/hormone/drug)

  • Effector molecules: those that are activated by the signaling cascade and begin biological response (G-Protein)

<ul><li><p>receptors are proteins/enzymes that participate in intracellular communication via chem signals</p></li><li><p>ligands: signaling molecules, can be endo/exo -genous (neurotransmitter/hormone/drug) </p></li><li><p>Effector molecules: those that are activated by the signaling cascade and begin biological response (G-Protein)</p></li></ul>
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Effector activating adenylyl cyclase or extracellular (serotonin) receptor (lec 2)

  • increase in cAMP

<ul><li><p>increase in cAMP</p></li></ul>
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Nature of Drug-target interaction (lec 2)

  1. has an effective conc range (saturation)

  2. has desired biological specificity

  3. chem specificity (enantiomers)

    • racemic mixtures

      • could lead to higher doses

      • could lead to unintended side effects

      • BUT are cheaper to make

  4. can be inhibited/antagonized/blocked

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Characterization of D+R binding (lec 2)

  • rxn is “on and off” like enzyme kinetics

  • an acute response can vary w/ dose (shown w/ picture)

  • affinity measures the strength of the D-R interaction

  • the Dose-Response curve measures the interaction of D-R

  • Classical theory: Response is relative to drug conc and the # of receptors activated

    • increase dose leads to increased response (bc more receptors activated)

<ul><li><p>rxn is “on and off” like enzyme kinetics</p></li><li><p>an acute response can vary w/ dose (shown w/ picture)</p></li><li><p><strong><u>affinity</u></strong> measures the strength of the D-R interaction</p></li><li><p>the Dose-Response curve measures the interaction of D-R</p></li><li><p><strong><u>Classical theory:</u></strong> Response is relative to drug conc and <strong><u>the # of receptors activated</u></strong></p><ul><li><p>increase dose leads to increased response (bc more receptors activated)</p></li></ul></li></ul>
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Dose response-curve (lec 2)

  • semi-logarithmic transformation

  • expands conc scale at low [ ] (binding changes rapidly)

  • compresses conc scale at high [ ] (binding changes slowly)

  • doesn’t change value of Kd (affinity)

<ul><li><p>semi-logarithmic transformation</p></li><li><p>expands conc scale at low [ ] <strong><u>(binding changes rapidly)</u></strong></p></li><li><p>compresses conc scale at high [ ] <strong><u>(binding changes slowly)</u></strong></p></li><li><p>doesn’t change value of Kd (affinity)</p></li></ul>
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Dose-response curve: Efficacy (lec 2)

  • Emax: maximal response achieved by an agonist (efficacy)

  • EC50: drug conc at 50% of Emax (potency)

    • ED50: 50% of max effective dose

    • affinity (strength of interaction btwn target and drug)

      • Kd

<ul><li><p>Emax: maximal response achieved by an agonist (efficacy)</p></li><li><p>EC50: drug conc at 50% of Emax (potency)</p><ul><li><p>ED50: 50% of max effective dose</p></li><li><p>affinity (strength of interaction btwn target and drug)</p><ul><li><p>Kd</p></li></ul></li></ul></li></ul>
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Dose-response curve: potency (lec 2)

  • A is more potent because response comes w/ lower drug conc

<ul><li><p>A is more potent because response comes w/ lower drug conc</p></li></ul>
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Efficacy vs. Potency (lec 2)

  • looking at multiple drugs interacting w/ target via log dose response curve, we can compare efficacy and potency

    • A more potent

    • B and D highest efficacy

  • clinical relevance of a drug depends on the maximal efficacy and ability to activate receptors more than the drug’s potency

<ul><li><p>looking at multiple drugs interacting w/ target via log dose response curve, we can compare efficacy and potency</p><ul><li><p>A more potent</p></li><li><p>B and D highest efficacy</p></li></ul></li><li><p>clinical relevance of a drug depends on the maximal efficacy and ability to activate receptors more than the drug’s potency</p></li></ul>
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Application of D-R curve info (lec 2)

  • Y axis: determines the “measurement” (effective vs. lethal vs. toxic response)

<ul><li><p>Y axis: determines the “measurement” (effective vs. lethal vs. toxic response)</p></li></ul>
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Applications of D-R curve (lec 2)

  • larger T.I (therapeutic index) = safer drug

  • ~833 = very safe

<ul><li><p>larger T.I (therapeutic index) = safer drug</p></li><li><p>~833 = very safe</p></li></ul>
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Drug classification (lec 2)

  • drugs can be classified by their interaction w/ the target and subsequent “response”

  • Agonist:

    • full agonist (100% max efficacy)

    • partial agonist

    • positive allosteric modulator (affects agonist activity)

  • Antagonist:

    • competitive

    • noncompetitive: Irreversible or negative allosteric modulator (affects agonist activity)

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Agonists (lec 2)

  • a drug can mimic (agonist) or enhance (positive allosteric modulator) the action of an endogenous compound at its site of action

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<p>Full agonist (lec 2)</p>

Full agonist (lec 2)

  • mimics effects of endogenous ligand

  • GENERALLY binds at site that endogenous ligand bins

  • initiate biological response upon binding R

  • produce a full response when all Rs bound

<ul><li><p>mimics effects of endogenous ligand</p></li><li><p>GENERALLY binds at site that endogenous ligand bins</p></li><li><p>initiate biological response upon binding R</p></li><li><p>produce a full response when all Rs bound</p></li></ul>
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Salbutamol (lec 2)

  • selective β2 adrenergic receptor agonist (competes w/ epinephrine)

  • for relief of bronchospasm in asthma and COPD

  • causes smooth muscle relaxation in bronchi

<ul><li><p>selective β2 adrenergic receptor agonist (competes w/ epinephrine)</p></li><li><p>for relief of bronchospasm in asthma and COPD</p></li><li><p>causes <strong><u>smooth muscle relaxation in bronchi</u></strong></p></li></ul>
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Partial agonist (lec 2)

  • mimics effects of endogenous ligand

  • GENERALLY binds at site that endogenous ligand bins

  • initiate biological response upon binding R

  • will NOT produce a full response even when all Rs bound

  • these agents have less efficacy (reduced intrinsic activity)

  • ex: Pindolol

<ul><li><p>mimics effects of endogenous ligand</p></li><li><p>GENERALLY binds at site that endogenous ligand bins</p></li><li><p>initiate biological response upon binding R</p></li><li><p>will NOT produce a full response even when all Rs bound</p></li><li><p>these agents have less efficacy (reduced intrinsic activity)</p></li><li><p>ex: Pindolol</p></li></ul>
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Pindolol (lec 2)

  • selective β1 adrenergic receptor partial agonist

  • used to treat hypertension by “blunting” the β adrenergic signaling at the heart

  • reducing strength and speed of cardiac contraction

<ul><li><p>selective β1 adrenergic receptor partial agonist</p></li><li><p>used to <strong><u>treat hypertension</u></strong> by <strong><u>“blunting” the β adrenergic signaling</u></strong> at the heart </p></li><li><p><strong><u>reducing strength and speed of cardiac contraction</u></strong></p></li></ul>
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<p>Positive allosteric modulators (lec 2)</p>

Positive allosteric modulators (lec 2)

  • enhances effect of endogenous ligand

  • GENERALLY binds at site distinct from endogenous ligand binding site

  • will shift agonist dose-response curve left (less agonist required for response)

  • ex: Diazepam

<ul><li><p>enhances effect of endogenous ligand</p></li><li><p>GENERALLY binds at site distinct from endogenous ligand binding site</p></li><li><p>will shift agonist dose-response curve left (less agonist required for response)</p></li><li><p>ex: Diazepam</p></li></ul>
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Diazepham (ValiumTM) (lec 2)

  • Positive allosteric modulator of GABAA receptor (an inhibitory channel that decreases neuronal activity)

  • used for treatment of anxiety, insomnia, and seizures

  • increases frequency of ion channel opening when GABA binds to GABAA receptor

    • leads to more chloride ions entering the neuron

    • CNS depressant effects

<ul><li><p>Positive allosteric modulator of GABA<sub>A</sub> receptor (an inhibitory channel that decreases neuronal activity) </p></li><li><p>used for treatment of anxiety, insomnia, and seizures</p></li><li><p>increases frequency of ion channel opening when GABA binds to GABA<sub>A</sub> receptor</p><ul><li><p>leads to more chloride ions entering the neuron</p></li><li><p>CNS depressant effects</p></li></ul></li></ul>
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Antagonists, inhibitors and blockers in diff fields (lec 2)

  • pharmacological: blocks ability of a D-R interaction by another ligand

    • Cimetidine binds H2 R and blocks ability of histamine to bind therefore lowers gastric acid secretion

  • chemical: interaction of 2 compounds in solution such that effect of active drug lost

    • Metal chelator + toxic metal

  • Physiological: interaction of 2 drugs w/ opposing physiological actions

    • histamine decreases BP via H1 R and epinephrine increases BP via β-Adr R

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<p>Antagonists (lec 2)</p>

Antagonists (lec 2)

  • binds R but doesn’t initiate biological activity/signaling cascade

  • biological effects from “preventing” natural or endogenous agonist from binding and R activation

  • 0 efficacy on its own

<ul><li><p>binds R but doesn’t initiate biological activity/signaling cascade</p></li><li><p>biological effects from “preventing” natural or endogenous agonist from binding and R activation</p></li><li><p>0 efficacy on its own</p></li></ul>
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Competitive antagonist (lec 2)

  • a drug that can block the action of endogenous and other compounds at their site of action

  • inhibition can be overcome by increase in [agonist]

  • affects Agonist potency (shifts D-R curve right)

    • clinically useful

  • ex: Propranolol

<ul><li><p>a drug that can block the action of endogenous and other compounds at their site of action</p></li><li><p>inhibition can be overcome by increase in [agonist]</p></li><li><p>affects Agonist potency <strong><u>(shifts D-R curve right)</u></strong></p><ul><li><p>clinically useful</p></li></ul></li><li><p>ex: Propranolol</p></li></ul>
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Propranolol (lec 2)

  • Competitive, non-selective beta antagonist at the beta adrenergic receptor (beta-blocker)

  • used for treatment of hypertension (high bp)

    • decreased heart rate, force of contraction and cardiac output

<ul><li><p>Competitive, non-selective beta antagonist at the beta adrenergic receptor (beta-blocker)</p></li><li><p>used for treatment of hypertension (high bp)</p><ul><li><p>decreased heart rate, force of contraction and cardiac output</p></li></ul></li></ul>
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Non-competitive antagonist (lec 2)

  • irreversible or negative allosteric modulator

  • may not be at same site on R as agonist (neg. allosteric modulator)

  • may be covalent bonding (irreversible)

  • affects Ag potency and Efficacy (shifts D-R curve right + down)

    • certain amt of receptors are changed so it can’t be used

<ul><li><p>irreversible or negative allosteric modulator</p></li><li><p>may not be at same site on R as agonist (neg. allosteric modulator)</p></li><li><p>may be covalent bonding (irreversible)</p></li><li><p>affects Ag potency and Efficacy <strong><u>(shifts D-R curve right + down)</u></strong></p><ul><li><p>certain amt of receptors are changed so it can’t be used</p></li></ul></li></ul>
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Neg. allosteric modulator (lec 2)

  • impede the action of endogenous and other compounds at diff site of action

  • ex: β-carboline

<ul><li><p>impede the action of endogenous and other compounds at diff site of action</p></li><li><p>ex: β-carboline</p></li></ul>
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β-carboline (lec 2)

  • Alkaloid found in plants and animals

  • acts as a negative allosteric modulator of the GABAA receptor

  • induce convulsions and increase anxiety (anxiogenic)

  • binds at the benzodiazepine site

    • decreases GABA stimulated chloride movement into cell (less chloride ions entering neuron)

    • less CNS depression and more excitable cells

<ul><li><p>Alkaloid found in plants and animals</p></li><li><p>acts as a negative allosteric modulator of the GABA<sub>A</sub> receptor</p></li><li><p>induce convulsions and increase anxiety (anxiogenic)</p></li><li><p>binds at the benzodiazepine site </p><ul><li><p>decreases GABA stimulated chloride movement into cell (less chloride ions entering neuron)</p></li><li><p>less CNS depression and more excitable cells</p></li></ul></li></ul>
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Antagonists, blockers, and inhibitors (lec 2)

  • Antagonists: reserved for drugs acting on receptors

    • bind to agonist site

    • may be “blockers” (block agonists from binding and activating R)

  • Blockers and inhibitors: MAY refer to antagonists at Rs (beta blockers) BUT also to drugs that act via other methods to reduce signaling cascades

    • block transporters (Fluoxetine blocks transporter for serotonin)

    • inhibit enzymes (ibuprofen inhibits COX enzyme)

    • act as “sink” for protein (Etanercept is an antibody for TNFα)

    • Allosteric modulators (Diltiazem is a Ca2+ channel blocker)

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Ibuprofen (lec 2)

  • non-steroidal anti-inflammatory drug (NSAID)

  • inhibits the enzyme cyclooxygenase (COX)

    • stops release of Prostanoids (mediators of pain, inflammation and fever

<ul><li><p>non-steroidal anti-inflammatory drug (NSAID)</p></li><li><p>inhibits the enzyme cyclooxygenase (COX)</p><ul><li><p>stops release of Prostanoids (mediators of pain, inflammation and fever</p></li></ul></li></ul>
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Fluoxetine (lec 2)

  • selective Serotonin reuptake inhibitor (SSRI)

  • serotonin is removed from the synapse by reuptake transporters on the presynaptic neuron

    • SSRIs block transporters, allowing it to remain active in the synapse longer

<ul><li><p>selective Serotonin reuptake inhibitor (SSRI)</p></li><li><p>serotonin is removed from the synapse by reuptake transporters on the presynaptic neuron</p><ul><li><p>SSRIs block transporters, allowing it to remain active in the synapse longer</p></li></ul></li></ul>
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Other mechs of drug action (lec 2)

  • create osmotic load (Laxatives like mannitol) (puts H2O into GI tract)

  • change pH (ammonium chloride to acidify the urine) (traps drug)

  • chelation (EDTA to bind divalent metal cations)

  • disruption of membranes (Polymixin antibiotics disrupt bacterial cell membranes)

  • damage DNA (chemotherapeutic agents like antimetabolites)

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Drug biological action (lec 3)

  • for drug to have biological action is MUST be soluble in bodily fluids and able to cross biological membranes

  • ability to permeate biological membranes dependent on:

    • drug’s physicochemical properties

    • membrane/tissue physiological and anatomical characteristics

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Biological environment: membranes (lec 3)

  • phospholipid bilayer:

    • amphipathic lipids (hydrophilic head/lipophilic tails)

    • embedded proteins (some form channels/pores)

<ul><li><p>phospholipid bilayer: </p><ul><li><p>amphipathic lipids (hydrophilic head/lipophilic tails)</p></li><li><p>embedded proteins (some form channels/pores) </p></li></ul></li></ul>
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<p>Characteristics of biological membranes (lec 3)</p>

Characteristics of biological membranes (lec 3)

  • drugs must pass across biological membranes to be absorbed, distribute and reach their site of action, and be eliminated from the body

  • BUT drugs must also be able to traverse water (we are mostly made of H2O)

<ul><li><p>drugs must pass across biological membranes to be absorbed, distribute and reach their site of action, and be eliminated from the body</p></li><li><p>BUT drugs must also be able to traverse water (we are mostly made of H2O)</p></li></ul>
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Physicochemical drug properties (lec 3)

  • physiochem properties of chem agent affect drug movement in biological environments

    1. molecular size

    2. solubility in water and lipid phases

      • partition coefficient or Pow

      • total polar surface area (TPSA)

    3. extent of ionization (charge)

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Molecular size (lec 3)

  • expressed in daltons (Da or kDA)

    • most drugs are 200-500 Da (reasons for drugs = small molecule chemicals)

  • proteins are much larger (must be injected, can’t be taken orally)

    • insulin: 6000 Da

    • albumin: 65000 Da

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Molecular weight and hydrophilicity (lec 3)

  • smaller molecules generally cross membranes and distribute more readily

  • more important for hydrophilic drugs (larger size limits passive diffusion, must be transported w/ channels)

<ul><li><p>smaller molecules generally cross membranes and distribute more readily</p></li><li><p>more important for hydrophilic drugs (larger size limits passive diffusion, must be transported w/ channels)</p></li></ul>
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Solubility (lec 3)

  • ability of a solute to dissolve in a solvent to form a homogenous solution

    • nature of solvent and solute (polarity) (“like dissolves like”)

  • hydrophilicity:

    • a drug must be soluble in aq body fluids in order to distribute or reach its site of action

    • polar or ionic compounds (bc of H-bonds)

  • lipophilicity:

    • key physical property determining membrane permeability

      • vital for drug to pass through lipid bilayer (A, D, E)

      • potential for bioaccumulation (drug concentrates in adipose and lipid compartments)

    • non polar compounds

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Passage across membranes indicates permeability (lec 3)

  • more nrg needed for more hydrophilic molecule

<ul><li><p>more nrg needed for more hydrophilic molecule</p></li></ul>
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Ideal drug (lec 3)

  • not only polar/non-polar, best to be amphipathic

  • drugs have both polar + non-polar groups, combo of these determine solubility in vivo

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<p>Measuring solubility (Lec 3)</p>

Measuring solubility (Lec 3)

  • determined through partition coefficient (Pow or Kow)

  • Pow can be determined experimentally or in silico

  • Log P = log of octanol: water partition coefficient

    • Pow at equilibrium

    • “drug-like” molecules have log P = 0.5 - 5

    • log P > 5 leads to less permeability bc can’t pass through small water layer on membrane

  • high Kow = high lipid solubility (good permeation across membranes)

  • low Kow = low lipid solubility (poor permeation across membranes)

<ul><li><p>determined through partition coefficient (P<sub>ow</sub> or K<sub>ow</sub>)</p></li><li><p>P<sub>ow</sub> can be determined experimentally or in silico</p></li><li><p>Log P = log of octanol: water partition coefficient</p><ul><li><p>P<sub>ow</sub> at equilibrium</p></li><li><p>“drug-like” molecules have log P = 0.5 - 5</p></li><li><p>log P &gt; 5 leads to less permeability bc can’t pass through small water layer on membrane</p></li></ul></li><li><p>high K<sub>ow</sub> = high lipid solubility (good permeation across membranes)</p></li><li><p>low K<sub>ow </sub>= low lipid solubility (poor permeation across membranes)</p></li></ul>
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Fick’s law of diffusion (lec 3)

  • a drug will flow from area of high conc to low conc, w/ rate of flow being higher w/ larger conc grads

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Lipinski’s rule of 5 (lec 3)

  • MOST ORAL drug molecules should have:

    • log P </= 5

    • molecular weight </= 500 g/mol (Da)

    • # of H-bond acceptors </= 10

    • # of H-bond donors </= 5

  • molecules violating more than one of these rules “may have probs w/ ORAL bioavailability”

  • doesn’t predict drugs biological activity

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Role of TPSA: “Topological Polar Surface Area” (lec 3)

  • contribution to the outer electron shell “surface area” of the molecule from electronegative atoms/atoms w/ unpaired electrons (ex: N, O) and from groups containing these atoms

  • polar surface area of >140Å2 tend to be poor at permeating cell membranes

    • to access brain (cross BBB), TPSA = <90Å2

<ul><li><p>contribution to the outer electron shell “surface area” of the molecule from electronegative atoms/atoms w/ unpaired electrons (ex: N, O) and from groups containing these atoms</p></li><li><p>polar surface area of &gt;140Å<sup>2</sup> tend to be poor at permeating cell membranes</p><ul><li><p>to access brain (cross BBB), TPSA = &lt;90Å<sup>2</sup></p></li></ul></li></ul>
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Ionization (lec 3)

  • many drugs are weak acids/bases containing functional R groups that can be ionized (charged) or unionized (uncharged) depending on pH of the surrounding medium

    • due to protonation/deprotonation of the compound as a result of the drug’s interaction w/ aq medium

  • unionized forms of a drug can more readily diffuse across a membrane

  • ionized forms of a drug will have lower Kow and thus a reduced ability to permeate the membrane

    • charged are more hydrophilic due to their ability to interact w/ H2O dipoles through H-bonds

<ul><li><p>many drugs are weak acids/bases containing functional R groups that can be ionized (charged) or unionized (uncharged) depending on pH of the surrounding medium</p><ul><li><p>due to protonation/deprotonation of the compound as a result of the drug’s interaction w/ aq medium</p></li></ul></li><li><p>unionized forms of a drug can more readily diffuse across a membrane</p></li><li><p>ionized forms of a drug will have lower K<sub>ow</sub> and thus a reduced ability to permeate the membrane</p><ul><li><p>charged are more hydrophilic due to their ability to interact w/ H2O dipoles through H-bonds</p></li></ul></li></ul>
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General principles (lec 3)

  • drugs in aq solution exist at an equilibrium btwn ionized/non-ionized forms (equilibrium can be shifted by varying the pH of a medium ([H+])

  • whether a drug will be mostly ionized/unionized depends on:

    • pH of medium

    • pKa of drug

    • whether drug is an acid/base

  • acidic drugs ionize by losing a proton

    • tend to ionize in more basic medium (high pH, low [H+])

    • protonated form = neutral (more lipid soluble)

  • basic drugs ionize by accepting a proton

    • tend to ionize in more acidic medium (low pH, high [H+])

    • unprotonated form = neutral (more lipid soluble)

<ul><li><p>drugs in aq solution exist at an equilibrium btwn ionized/non-ionized forms (equilibrium can be shifted by varying the pH of a medium ([H+])</p></li><li><p>whether a drug will be mostly ionized/unionized depends on:</p><ul><li><p>pH of medium</p></li><li><p>pKa of drug</p></li><li><p>whether drug is an acid/base</p></li></ul></li><li><p>acidic drugs ionize by losing a proton</p><ul><li><p>tend to ionize in more basic medium (high pH, low [H+])</p></li><li><p>protonated form = neutral (more lipid soluble)</p></li></ul></li><li><p>basic drugs ionize by accepting a proton</p><ul><li><p>tend to ionize in more acidic medium (low pH, high [H+])</p></li><li><p>unprotonated form = neutral (more lipid soluble)</p></li></ul></li></ul>
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Acids (lec 3)

  • proton donors (ionize after losing H+)

  • at high pH, reaction is driven right to give more H+, more drug is deprotonated and therefore ionized (less lipid souble)

  • at low pH, reaction is driven to the left, more drug is protonated and therefore unionized (more lipid soluble)

<ul><li><p>proton donors (ionize after losing H+)</p></li><li><p>at high pH, reaction is driven right to give more H+, more drug is deprotonated and therefore ionized (less lipid souble)</p></li><li><p>at low pH, reaction is driven to the left, more drug is protonated and therefore unionized (more lipid soluble)</p></li></ul>
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Bases (lec 3)

  • proton acceptors (ionize after gaining H+)

  • at high pH, reaction is driven right to give more H+, more drug is deprotonated and therefore unionized (more lipid soluble)

  • at low pH, reaction is driven left, more drug is protonated and therefore ionized (less lipid soluble)

<ul><li><p>proton acceptors (ionize after gaining H+)</p></li><li><p>at high pH, reaction is driven right to give more H+, more drug is deprotonated and therefore unionized (more lipid soluble)</p></li><li><p>at low pH, reaction is driven left, more drug is protonated and therefore ionized (less lipid soluble)</p></li></ul>
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How much drug is ionized at given pH? (lec 3)

  • depends on the drug’s pKa

  • use Henderson-Hasselbach equation: pH - pKa = log [unprotonated]/[protonated]

  • pka < pH = deprotonated

  • pka > pH = protonated

<ul><li><p>depends on the drug’s pKa</p></li><li><p>use Henderson-Hasselbach equation: pH - pKa = log [unprotonated]/[protonated] </p></li><li><p>pka &lt; pH = deprotonated</p></li><li><p>pka &gt; pH = protonated</p></li></ul>
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pKa (lec 3)

  • pKa reflects pH which [protonated] = [deprotonated]

  • doesn’t determine whether drug is acid or base

    • depends on functional group

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Ionization plays major role in determining… (lec 3)

  • solubility and absorption of the compound (bioavailability)

  • cell/membrane permeation and distribution to site of action, plasma-protein binding and volume of distribution

  • elimination of compound

  • binding of a compound at its site of action

  • because pH is diff physiological compartments varies

<ul><li><p>solubility and absorption of the compound (bioavailability)</p></li><li><p>cell/membrane permeation and distribution to site of action, plasma-protein binding and volume of distribution</p></li><li><p>elimination of compound </p></li><li><p>binding of a compound at its site of action</p></li><li><p>because pH is diff physiological compartments varies</p></li></ul>
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Weakly basic drug w/ pka ~ 9 (lec 3)

knowt flashcard image
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Elimination affected by “trapping” drug in compartment due to pH diffs (lec 3)

  • diffs in pH of fluid “compartments” can be important in excretion

  • BUT can also intentionally alter urinary pH to enhance renal excretion

<ul><li><p>diffs in pH of fluid “compartments” can be important in excretion</p></li><li><p>BUT can also intentionally alter urinary pH to enhance renal excretion</p></li></ul>
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Barriers to drug movement w/in body (lec 3)

Physical/anatomical barriers:

  • cell membranes, which preclude cellular passage

  • links formed btwn cells, which preclude intercellular passage of molecules

Functional barriers:

  • transport systems that can carry the drug out of cells, thereby lowering drug conc in tissues/compartments w/ those systems

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Partition Coefficient (lec 3)

  • major factor w/ regards to drug permeation

  • higher Pow = more rapidly absorbed

  • hydrophilic barrier associated w/ glycocalyx: cut off phenomenon

    • reduced permeability at diff pts depending on nature of membranes

  • small intestine has cut off ~20 bc microvilli leads to more of the small water layer on membranes

<ul><li><p>major factor w/ regards to drug permeation</p></li><li><p>higher Pow = more rapidly absorbed</p></li><li><p>hydrophilic barrier associated w/ glycocalyx: <strong><u>cut off phenomenon</u></strong></p><ul><li><p>reduced permeability at diff pts depending on nature of membranes</p></li></ul></li><li><p>small intestine has cut off ~20 bc microvilli leads to more of the small water layer on membranes</p></li></ul>
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Physical barriers: epithelial cells (lec 3)

  • epithelial cells of skin, GI, bladder, cornea are joined by tight junctions/occluding zonulae

  • intercell spaces are completely blocked

  • drugs must pass through cells

<ul><li><p>epithelial cells of skin, GI, bladder, cornea are joined by tight junctions/occluding zonulae</p></li><li><p>intercell spaces are completely blocked</p></li><li><p>drugs must pass through cells</p></li></ul>
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Endothelial cells (lec 3)

  1. capillaries w/ Maculae

    • most transient holes

    • intercell spaces

    • pinocytic vesicles

  2. capillaries w/ fenestrations

    • excretory/secretory organs

    • long lasting

    • those <45kDa may pass through basement membrane

    • non protein bound molecules

  3. capillaries w/ occluding zonula (BBB)

<ol><li><p>capillaries w/ Maculae</p><ul><li><p>most transient holes</p></li><li><p>intercell spaces</p></li><li><p>pinocytic vesicles</p></li></ul></li><li><p>capillaries w/ fenestrations</p><ul><li><p>excretory/secretory organs</p></li><li><p>long lasting</p></li><li><p>those &lt;45kDa may pass through basement membrane</p></li><li><p>non protein bound molecules</p></li></ul></li><li><p>capillaries w/ occluding zonula (BBB)</p></li></ol>
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Physical barriers: BBB (lec 3)

  • Brain capillaries

  • endothelial cells joined by tight junctions/occluding zonulae

  • NO intercellular spaces

  • few transient fenestrae

  • major issue in drug targeting

    • even w/ exceptions to occluding zonulae of capillaries w/in brain, it is IMPERATIVE to note that MANY COMPOUNDS are excluded from CNS via BBB

    • drugs w/ desired CNS action should be lipophilic/utilize “help”

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Physical barriers: Placenta (lec 3)

  • assume all drugs cross placenta

    • limited maternal blood flow into placenta therefore equilibration of drug btnw mom and fetus takes at least 10-15 mins

  • but physiochem properties of the drug will determine its relative ability to cross placenta (bio membrane)

    • degree of lipophilicity

    • drug size

    • extent of ionization

    • extent of plasma protein binding

  • drug transporters/efflux pumps

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Functional barriers: the Transporters (lec 3)

  • transport systems that can carry the drug out of cells, thereby lowering drug conc in tissues/compartments w/ those systems

<ul><li><p>transport systems that can carry the drug out of cells, thereby lowering drug conc in tissues/compartments w/ those systems</p></li></ul>
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Sites of drug transport (lec 3)

  • some are located throughout the body (ubiquitous) and others have specific tissue expression

  • commonly found in enterocytes, hepatocytes, renal tubular cells and BBB epithelial cells

  • small intestine: absorption

  • liver: hepatobiliary transport

  • Kidney: tubular secretion

  • Brain capillaries: brain function

<ul><li><p>some are located throughout the body (ubiquitous) and others have specific tissue expression</p></li><li><p>commonly found in enterocytes, hepatocytes, renal tubular cells and BBB epithelial cells</p></li><li><p>small intestine: absorption</p></li><li><p>liver: hepatobiliary transport</p></li><li><p>Kidney: tubular secretion</p></li><li><p>Brain capillaries: brain function</p></li></ul>
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Polarization terminology (lec 3)

  • enterocytes (intestine): basolateral (blood), apical (gut lumen)

  • Hepatocytes (liver): sinusoidal (blood), Canalicular (bile)

  • Renal tubular cells (kidney): basolateral, apical (kidney lumen, urine)

  • Brain capillary endothelial cells (BBB): abluminal (brain), luminal (blood capillary)

  • location of transporters can affect time course of drug in body (absorption vs elimination)

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Solute Carrier (SLC) transporters (lec 3)

  • distinct from primary active transporters and ion channels, both structurally and functionally

  • localized to cellular membranes as well as organelle membranes (ex: SLC25 fam of mitochondrial transporters)

  • most are transport specific molecules, but some are broad-range (ex: SLC21 and SLC22 fams)

  • important drug targets (ex: SLC 6 + 12 fams)

<ul><li><p>distinct from primary active transporters and ion channels, both structurally and functionally</p></li><li><p>localized to cellular membranes as well as organelle membranes (ex: SLC25 fam of mitochondrial transporters)</p></li><li><p>most are transport specific molecules, but some are broad-range (ex: SLC21 and SLC22 fams)</p></li><li><p>important drug targets (ex: SLC 6 + 12 fams)</p></li></ul>
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ATP binding cassette (ABC) transporters (lec 3)

  • substrates undergo primary active transport

    • hydrolysis of bound ATP powers unidirectional transport of substrates against their conc grad (usually out of cells)

  • important for limiting cellular exposure to drugs and toxins

    • beneficial when preventing unwanted exposure to environment toxins

    • can limit therapeutic efficacy of cytotoxic drugs such as chemotherapeutics and antibiotics

<ul><li><p>substrates undergo primary active transport </p><ul><li><p>hydrolysis of bound ATP powers unidirectional transport of substrates against their conc grad (usually out of cells)</p></li></ul></li><li><p>important for limiting cellular exposure to drugs and toxins</p><ul><li><p>beneficial when preventing unwanted exposure to environment toxins</p></li><li><p>can limit therapeutic efficacy of cytotoxic drugs such as chemotherapeutics and antibiotics</p></li></ul></li></ul>
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P-gp structure and binding (lec 3)

  • substrate spans membrane and becomes locked in a p-gp drug-binding pocket near the intracell leaf of membrane

  • 2 ATP molecules bind to the intracellular ATP-binding sites

    • hydrolysis of ATP to ADP promotes conformational change in p-gp

  • substrate is released into extracell environment

<ul><li><p>substrate spans membrane and becomes locked in a p-gp drug-binding pocket near the intracell leaf of membrane</p></li><li><p>2 ATP molecules bind to the intracellular ATP-binding sites</p><ul><li><p>hydrolysis of ATP to ADP promotes conformational change in p-gp</p></li></ul></li><li><p>substrate is released into extracell environment</p></li></ul>
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P-gp localization and direction of efflux (lec 3)

  • P-gp localization favours preferential transport of substrates out of tissues and into blood, feces, mucus or urine

<ul><li><p>P-gp localization favours preferential transport of substrates out of tissues and into blood, feces, mucus or urine</p></li></ul>
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Multidrug resistance (lec 3)

  • ABC transporters w/ broad substrate specificity can affect therapeutic actions of various chemotherapeutics and antibiotics when expressed in tumor/bacterial cells

  • these transporters contribute to multidrug resistance: ability of microorgs/tumor cells to resist the action of a wide variety of chems

  • main multidrug resistance transporters are p-gp, MRPs, and BCRP

    • inhibiting these transporters is common practice alongside standard chemotherapy

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Transporters can lead to… (lec 3)

  1. therapeutic failure

    • significant in infectious disease and cancer drug therapy

    • anti-infectious disease agents: several genetic polymorphisms P-glycoprotein, anionic + cationic and other transporters

    • multiple cancers: ABC transports (P-gp, MRP1, and BCRP) up-regulated in diff tumors + over-expressed in various cancer cells

    • increased AE

  2. improve efficacy and safety

    • remove drugs from “locations” (placental transfer)

      • digoxin, glyberide

    • increase distribution (deliver drugs to targets)

      • statins

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Ex: BBB (lec 3)

  • Epithelial occluding zonulae (tight junctions) and luminal expression of p-gp, BCRP and MRP efflux transporters all heavily limit drug transport to the brain (protects brain)

  • OATP1A2 is one of the few luminal influx transporters at the blood brain barrier, and substrates of this transporter can achieve significant brain concentrations

<ul><li><p>Epithelial occluding zonulae (tight junctions) and luminal expression of p-gp, BCRP and MRP efflux transporters all heavily limit drug transport to the brain (protects brain)</p></li><li><p>OATP1A2 is one of the few luminal influx transporters at the blood brain barrier, and substrates of this transporter can achieve significant brain concentrations</p></li></ul>
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