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Holobiont
A human plus all of its resident microbiota.
Human Microbiome Project
A project of the National Institutes of Health to identify microbial inhabitants of the human body and their role in health and disease.
Microbial antagonism
A relationship in which microorganisms compete for survival in a common environment by taking actions that inhibit or destroy another organism.
Endogenous
Originating or produced within an organism or one of its parts.
Opportunistic
Ordinarily non-pathogenic or weakly pathogenic microbes that cause disease primarily in an immunologically compromised host.
Virulence
The relative capacity of a pathogen to invade and harm host cells.
Virulence factor
A microbe's structures or capabilities that allow it to establish itself in a host and cause damage.
Infectious dose
The minimum number of organisms required to cause an infection.
Portal of entry
The route of entry for an infectious agent; typically a cutaneous or membranous route.
Polymicrobial
Infections caused by more than one microbe.
Exogenous
Originating outside the body. (opposite of endogenous)
STEP 1: Types of Portals of Entry
Skin - through abrasion, broke skin, or bites
Gastrointestinal - by contaminated food, drink, ingested substance
Respiratory tract - oral and nasal cavities
Urogenital - contracted by sexual means
Pathogens that infect during birth
T - toxoplasmosis
O - other diseases
R - rubella
C - cytomegalovirus
H - Herpes
STEP 2: Attaching to the host and interacting with microbiome
Adhesion
The process where microbes gain a more stable foothold on host tissues.
Bacteria, fungi, and protozoal pathogens attach by fimbriae, surface proteins, adhesive slimes and capsules
Viruses attach by specialized spikes and glycoproteins
Helminths attach by suckers, hookers, and barbs
Step 3: Surviving Host Defense
Phagocytes
A class of white blood cells capable of engulfing other cells and particles.
STEP 3: Leukocidin
A heat-labile substance formed by some pyogenic cocci that impairs and sometimes lyses leukocytes.
STEP 3: Epigenetic
Referring to changes in the way DNA is transcribed, not actual changes in the DNA sequence.
STEP 4: Causing Disease
The three ways microbes can cause disease to the host are
By secreting proteins (enzymes or toxins) that directly damage host cells
causing an overreaction by the body’s defense and those defenses causes host damage
altering the host cell genome or transcription process through epigenetic changes
Direct damage via enzyme and toxins
Exoenzymes
break down and inflict damage on tissues, extracellular enzyme
Examples of exoenzymes - Mucinas and Keratinase
Hyaluronidase
digest hyaluronic acid
Toxigenicity
the power to produce toxins
Toxinoses
diseases whose adverse effects are primarily due to the production and release of toxins
Toxemia
condition in which a toxin is spread throughout the bloodstream
Intoxications
poisoning that results from the introduction of a toxin into body tissues through ingestion or injection
Types of Toxins
Neurotoxins - act on the nervous system
Enterotoxins - acts on the intestine
Hemotoxins - act on red blood cells
Nephrotoxins - damage the kidneys
Exotoxin
A toxin that is secreted by a living bacterial cell into infected tissues *causes more harm than endotoxin*
Endotoxin
a toxin that is not actively secreted but is shed from the outer membrane
found on all gram-negative bacteria
lipopolysaccharide
Hemolysins
class of bacterial exotoxin that disrupts the cell membrane of red blood cells
Localized infection
The microbe enters the body and remains confined to a specific tissue.
Systematic infection
Infection that spreads to several sites and tissues, usually in the bloodstream.
Focal infection
Infectious agent breaks loose from a local infection and is carried into other tissues.
Leukocytosis
An increase in white blood cells.
Leukopenia
A decrease in white blood cells.
Types of Portals of Exit
Respiratory and Salivary Portals - mucus, sputum, and nasal discharge
Skin Scales - shed skin and scalp
Fecal matter
Urogenital Tract - vaginal discharge or semen and urine
removal of blood or bleeding - blood removed or released from a puncture
Latency
The state of being inactive.
4 phases of infection and disease
incubation period - from time of contact of disease to first symptoms
Prodrome Stage - start of mild symptoms indicating the onset of disease
Acute period - disease becomes well established and multiples
convalescent Period - immune system responds and you start to get better
Passive carrier
A person who mechanically transfers a pathogen without ever being infected by it.
Horizontal pattern of transmission
Disease is spread through a population from one infected individual to another.
Vertical pattern of transmission
Transmission from parent to offspring via ovum, sperm, placenta, or milk.
Vehicle
an inanimate material that serves as a transmission agent for pathogens
Fomite
An inanimate object that harbors or transmits pathogens.
Koch's Postulates
A series of criteria to establish a causative relationship between a microbe and a disease.
Florence Nightingale
The first to collect and use health, disease, and death statistics to improve public health.
John Snow
The first to use a map to identify the cause of a disease outbreak.
Point Source
infectious agent came from one course and everyone that was exposed, was exposed of the same source at the same time.
Common Source
Outbreak resulting from common exposure to a single source of infection that can occur over a period of time
Propagated Epidemic
results from an infectious agent that is communicable from person to person and is therefore sustained over time in a population
Healthcare associated infection
any infections acquired as a direct results of a patients presence in a hospital or healthcare setting
Herd immunity
The collective acquired immunity in a population reducing the likelihood of infection.
White Blood cell: Granulocytes
a mature leukocyte that contains noticeable granules in a wright stain
Neutrophils, eosinophils, and basophils
Agranulocytes
One from a leukocytes having globular, non lobed nuclei and lacking prominent cytoplasmic granules
Cytokines
Chemical substances by white blood cells that regulate development, inflammation, and immunity.
B cells mature in red bone marrow, and T cells mature in the thymus
Lysozyme
An enzyme found in sweat, tears, and saliva that breaks down bacterial peptidoglycan.
Rubor - Red
Calor - warmth
Tumor - swelling
Dolor - pain
Diapedesis
The migration of intact blood cells between endothelial cells of a blood vessel.
Interferon
A small protein produced by certain white blood and tissue cells that acts as a cytokine.
Natural killer cells
A type of lymphocyte related to T cells that lack specificity for antigens.
Dendritic cells
A type of phagocyte that boosts immune responses by presenting antigens.
Antimicrobial peptides
short protein molecules found in epithelial cells, have the ability to kill bacteria
Immunogens
Any substance that induces a state of sensitivity or resistance after processing by the immune system.
B cells
type of lymphocyte or white blood cell, produce antibodies and neutralize pathogens
T cells
type of lymphocyte or white blood cell, destroy infected or cancerous cells
Major Histocompatibility Complex (MHC)
a set in mammals that produces molecules on surface of cells that differentiate among different individuals in the species
Epitope
The primary signal that a molecule is foreign.
Haptens
Partial antigens that cannot stimulate a full immune response.
Superantigens
Bacterial toxins that are potent stimuli for T cells.
Classes of Antibodies
Different types of antibodies including IgG, IgA, IgM, IgD, and IgE, each with distinct functions.
Active Immunity
Immunity that occurs when an individual receives an immune stimulus activating B and T cells.
Passive Immunity
Immunity that occurs when an individual receives immune substances produced actively in another body.
The immune system is responsible for…
Surveillance of the body
recognition of foreign material
Destruction of anything foreign
Antigen
any cell that induces a specific immune response by B cells or T cells and can stimulate resistance to an infection or toxin
Pathogen-associated molecular patterns (PAMP)
molecules on the surface of many types of microbes that are not present on host cells that mark the microbes as foreign
Pattern recognition receptors (PRR)
molecules on the surface of host defense cells that recognize pathogens associated molecular patterns on microbes
Mononuclear Phagocyte system
a collection of monocytes and macrophages scattered throughout the extracellular spaces that function to engulf and degrade foreign molecules.
Lymph
A plasma like fluid carried by the lymphatic circulation
Skin-associated lymphoid tissue (SALT)
discrete bundle of lymphatic tissue located just under the surface of the skin
Mucosa-associated Lymphoid Tissue (MALT)
small patches of lymphoid tissue situated in and on mucosal surface, containing T cells, B cells, phagocytes, and other immune cells
Gut-associated lymphoid Tissue (GALT)
A collection of lymphoid tissue in the gastrointestinal tract that includes the appendix, the lacteals, and Peyer’s patches.
Whole Blood
a liquid connective tissue consisting of blood cells suspended in plasma
Pluripotential Stem cell
a primary precursor of new blood cells, is a pool of undifferentiated cells
Clone
a group of genetically identical cells
IgA
a monomer of immunoglobulin, it is the most prevalent antibody, and neutralizes toxins. The only antibody capable of crossing the placenta
IgA
coats the surface of membranes and is found in saliva, tears, colostrum, and mucus
IgM
composed of five monomers, binds antigens, circulates mainly in the blood
IgD
found in miniscule amounts, main function is that it is the receptors for antigen on B cells
IgE
its role is to stimulate an inflammatory response, can lead to asthma and certain other allergies
How B cells respond to antigens
A B cell divides giving rise to plasma that releases the five classes of antibodies
Regulatory B cells regulate the degree of response from T cell
Characteristic of Good antigens
chemical composition
context
size
3 different cells that can serve as Antigen-presenting cells: APC
Macrophages
B cells
Dendritic Cells
First line of defense
includes any barriers that block invasion at the portal of entry, and limits access to the internal tissues of the body
skin, hair follicles, and skin glands
Second line of defense
internalized system of protective cells and fluids and includes inflammation, phagocytosis, fever, and antimicrobial products
three main types of phagocytes - neutrophils, monocytes, macrophages
Third line of defense
acquired on an individual basis as each foreign substance is encountered by white blood cells lymphocytes