Bacteria should not be observed in fresh semen smears, but stored samples frequently show contamination.
Source of bacteria include contamination from artificial vagina, prepuce and penis.
True pathogens (Brucella abortus, Vibrio foetus, Trichomonas foetus) are usually overgrown in culture by saprophytic bacteria. Pathogenic streptococci can be present in stallion semen (venereal infection in mare)