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Microbial Metabolism
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Identification of Microorganisms
Identification of microorganisms can be done by microbial biochemical processes that occur when a pure culture is inoculated into media that contains one or more specific substrates. The reactions that can be determined by using indicator reagents
Why is it necessary to have pure cultures when identifying bacteria using biochemical tests?
So that you can get the results you want with no false positives
What is a catalyst?
A substance that speeds up a chemical reaction without being permanently changed by it
What is an enzyme?
An organic catalyst, often a protein, made by a cell
Why are enzymes important in activities that occur in cells?
No chemical reactions could occur inside cells without enzymes
Enzymes promote changes only…
in very specific substances or substrates
What ending do many enzymes have?
-ase
What does “anaerobic” mean?
Without oxygen
What are we going to use fluid thioglycolate medium to indicate?
The presence or absence of oxygen
What is a resazurin?
A substance that binds to free oxygen
How will we make a jar anaerobic?
We place a hydrogen generator packet in the jar, along with a catalyst. The hydrogen reacts with the oxygen in the jar
Obligate Anaerobe
Cannot grow when is O2 is present
Is located in the bottom half of the tube in thioglycolate medium
Obligate Aerobe
Grows only when O2 is available
Is located within the red zone at the top of the tube in thioglycolate medium
Facultative Anaerobe
Grows best when O2 is available, but also grows without it
Growth all the way through the tube with the most growth within the red zone at the top of the tube in thioglycolate medium
Aerotolerant Anaerobe
Grows equally well with or without O2
Even growth all the way through the tube in thioglycolate medium
Microaerophile
Grows only if small amounts of O2 are available
Just below the red zone near the top of the tube in thioglycolate medium
What does the oxidase test tell us about bacteria?
It tells us whether or not the bacteria make oxidase, an enzyme essential for aerobic respiration
Positive Oxidase Test Result
The reagent turns blue/purple within 15 seconds
Negative Oxidase Test Result
Yellow or no color within 15 seconds
Catalase breaks down…
hydrogen peroxide producing oxygen and water
How can we tell if catalase is acting on its substrate?
BUBBLES
Phenol red broth is a differential media. What does a color change in phenol red broth indicate about a bacterium that has been growing in it?
Whether or not the bacterium has the enzymes necessary to ferment the sugar in the tube
Phenol red broth contains a pH indicator called phenol red, which indicates a pH change when it changes color. State the color of the broth under the following conditions:
Neutral pH- RED
Acidic pH- YELLOW
Alkaline pH- PINK
What is a Durham Tube and what does it collect?
A Durham Tube is a tiny tube that sits upside down in the phenol broth tubes
It collects gas
What two products may be produced during fermentation of simple carbohydrates?
Acid and Gas
How are Acid and Gas identified in the fermentation test? Can you have one without the other?
Acid turns phenol red yellow
Gas collects in the durham tube so you can see bubbling
You can have one without the other
Name 3 simple carbohydrates that can be added to media for biochemical testing
Glucose
Sucrose
Lactose