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126 Terms
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CDC estimates that Salmonella causes:
1.2 million illnesses 450 deaths every year (USA)
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Salmonella infection is most common in:
June, July, and August
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Salmonella - Taxonomy
Foodborne INFECTION Facultative Gram (-) Rods Family - Enterobacteriaceae Motile - Peritrichous flagella (all over their surface) - there are also non-flagellated variants
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Two Species of Salmonella
Salmonella enterica (former 'group I, II, IIIa, IIIb, IV, VI') Salmonella bongori (former 'group V')
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2500+ Serovars in 5 Subspecies of S. enterica
I - enterica II - salamae IIIa - arizonae IIIb - diarizonae IV - houtenae VI - indica
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All Former Group V are S. bongori:
old naming scheme = S. typhimurium new naming scheme = S. enterica Typhimurium or S. Typhimurium (serovar not italicized)
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New serovars are named after:
the place where they were first isolated - International standard
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CDC Salmonella Subtyping:
Tier 1 : based on Serotyping (using antibodies) Tier 2 : based Molecular Typing: PFGE genotyping (DNA fingerprinting; within a subtype) Now replaced with Whole Genome Sequencing (WGS), even better detailed info.
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Host-adaptation:
pathogens that have evolved so long and so closely with specific hosts that they have learned to modulate biochemical processes in the 'adapted hosts', but infection of other hosts may not be as severe
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Host-adapted to Humans:
S. Typhi (typhoid fever), S. Paratyphi A and C (paratyphoid fever) Most severe Salmonella illnesses (highest mortality rates)
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Host adapted to Animals:
S. Gallinarum (poultry), S. Dublin, S. Abortusovis (cattle) S. Typhisuis (swine) Can still cause illness in humans
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Un-adapted (to any particular animal):
Foodborne Pathogens
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Another definition of Host Adaptation is the
"ability of a pathogen to circulate and cause acute disease in a specific host population as a predominant reservoir."
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Reservoirs of Salmonella:
Poultry and Poultry Products Meat: Beef and Swine Fish Most commonly found pathogen in meat products (ahem!, what about Campylobacter?) USDA Testing Fruits and Vegetables
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Distribution of Salmonella:
Primary Habitat of Salmonella that cause FBI Water Other Body Organs Carriers Animal Feeds Food Products
Lymphatic system: Immunity and Spread of Infection
The lymphatic system plays an integral role in the immune functions of the body. It is the first line of defense against disease. This network of vessels and nodes transports and filters lymph fluid containing antibodies and lymphocytes (good) and bacteria (bad). The spleen also helps the body fight infection. The spleen contains lymphocytes and another kind of white blood cell called macrophages, which engulf and destroy bacteria, dead tissue, and foreign matter and remove them from the blood passing through the spleen. When bacteria are recognized in the lymph fluid, the lymph nodes make more infection-fighting white blood cells, which can cause swelling.
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Antigens transported across the intestinal epithelium by M cells are delivered to the
Peyer's patches and drain into the mesenteric lymph nodes (MLNs).
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Cell Receptors:
1. Binding & Transport of nutrients 2. Trigger for internal cell Regulation 3. Trigger for Cellular Uptake
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Peyer's Patches (M-cells)
general microbial uptake area has underlying lymphatic tissue (professional phagocytic cells engulf salmonella)
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Phagocytosis (macrophage)
uptake by professional phagocytic cells evagination of pseudopod-like arms
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Endocytosis (intestinal epithelial cells)
uptake by invagination of epithelial surface Salmonella can 'induce' uptake by epithelia. cells
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Vesicles (phagosome, endosome, lysosome)
entrap bacteria in lysosomal vesicles (SCV) vesicles discharge antimicrobials
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Normal Outcome of Phagocytosis (Endocytosis)
Phagocytosis: By 'professional' phagocytic cells (macrophage, dendritic cells) Endocytosis: "Receptor-mediated Endocytosis" - can be induced by nonprofessional phagocytic cells (intestinal absorptive epithelia cell/enterocyte).
Chromosome harbors 2 large areas of virulence genes called 'Pathogenic Islands':
SPI1 (Salmonella Pathogenic Island 1) SPI2 (Salmonella Pathogenic Island 2)
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SPI1 -
encodes genes for invasion of epithelia and intestinal inflammation Encodes for T3SS-1 (Type 3 Secretion System 1) Stimulates actin polymerization for uptake of surface-bound Salmonella
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SPI2 -
encodes genes for intracellular survival and replication in SCVs (Salmonella-containing vesicles). Encodes for T3SS-2 (Type 3 Secretion System 2) Inhibits cell defense mechanisms
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Salmonella Pathogenesis ('Trigger')
Surface adhesins bind GI epithelial cells SPI-1 (Salmonella Pathogenic Island 1) Engulfment (phagocytosis, RME) Vesicle formation SPI-2 (Salmonella Pathogenic Island 2) As many as 6 different Pathogenic Islands
SPI-2 encoded genes T3SS-2 ('syringe2') Injections of SPI-2 factors Inhibit cell defense systems
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Trigger:
The Type 3 Secretion System (T3SS/TTSS) is often referred to as a 'trigger' mechanism for pathogenesis because of the T3SS injection system (as opposed to a 'zipper' mechanism
Surface originally has a 'protein cuticle' layer Cuticle/surface may be contaminated with feces/bacteria (Salmonella?) Cuticle is meant to protect the egg Cuticle layer is washed away during washing of shell eggs Underlying shell surface is porous and the pores are large enough to allow bacteria to enter Bacterial entry through pores are facilitated by warm eggs being cooled too rapidly (creates negative pressure)
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Salmonella Enteritidis (SE):
egg-associated outbreaks phage-type 8 (U.S.) vs. phage-type 4 (U.K.) USDA-FSIS "Outbreak Traceback Program" mid-70's to mid-90's - SE from 5% to > 30% of all Salmonella outbreaks Eggs from infected flocks diverted from sale as 'shell eggs' (pasteurized liquid egg is OK) Results from transovarian infection in hens egg yolks become contaminated during egg formation in the hen uteri, resulting in internalized S. Enteritidis.
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Salmonella Enteritidis Shell Egg Outbreak 2010:
From May 1 to November 30, 2010, approximately 1,939 illnesses were reported that are likely to be associated with this outbreak. CDC - observed a 4-fold increase in Salmonella Enteritidis (SE) outbreaks through PulseNet (i.e, 200 cases/wk vs. typical 50/wk). FDA, USDA, CDC, and state partners conducted traceback investigations and found many of these restaurants or events received shell eggs from a single firm, Wright County Egg, in Galt, Iowa. Over 500 million eggs were recalled. Contamination of egg layers resulted from providing contaminated feed to pullets (young hens) that were then distributed to their 2 main egg production facilities in Iowa. This resulted in production of eggs that were internallycontaminated with Salmonella. This event pushed FDA to address contamination of animal feeds through FSMA
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3 Ways Eggs can get Infected with Salmonella:
Contamination of egg surface through the pores of the shell Descending Infection: contamination by oral uptake, infection of GI tract, infection of ovaries via systemic spread of infection Ascending Infection: infection of hen via cloacal opening that ascends to the ovaries
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Salmonella Enteritidis
Estimated that 1-in-20,000 commercial retail eggs may be contaminated Resulting in increased production of pasteurized liquid eggs: from elderly scared to eat shell eggs, from egg producers forced to shift contaminated shell eggs to pasteurized liquid egg Egg BeatersTm refrigerated egg substitute reduced (no) cholesterol due to absence of the egg yolk
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Pasteurization of Intact Shell Eggs:
Pasteurization of shell eggs to eliminate Salmonella Enteritidis using hot air system (Stein, Inc) obtained up to 7-log reduction of SE evaluated for the egg industry implemented in a few markets in the US
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Commercially Available Pasteurized Intact Shell Eggs:
Patented by Pasteurized Eggs, L.P. (Laconia, NH) Manufactured by Heat and Control, Inc. (Hayward, CA) The system pasteurizes up to 5,000 dozen/hour using an automated batch process Flats of fresh eggs are loaded onto carriers and transferred through a warm bath of aerated water The egg carriers are then immersed in a bath of chilled water, and then sealed to prevent future contamination.
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To prevent illness from bacteria:
Keep eggs refrigerated, cook until yolks are firm, and cook foods containing eggs thoroughly.
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By virtue of pasteurization, ____________________ is excluded from that requirement.
Davidson's Pasteurized Eggs
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Small Scale Egg Pasteurization:
Leda Technologies: Castor & Pollux pasteurizes eggs without coagulating the yolk targeting home/small businesses
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Current Issues: Live Poultry-Associated Outbreaks
2013 Multistate Outbreak of Human Salmonella Typhimurium Infections Linked to Live Poultry in Backyard Flocks A total of 316 persons infected with the outbreak strain of Salmonella Typhimurium have been reported from 37 states. Among 199 ill persons, with 51 (26%) hospitalized. 59% of ill persons are children 10 years of age or younger. 81% of ill people reported contact with live poultry in the week before their illness began. 97% of ill persons reported purchasing live poultry from agricultural feed stores. A total of 113 locations of feed stores representing 33 feed store companies were identified. Traceback investigations have identified 18 mail-order hatcheries that supplied poultry to these feed stores.
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Multi-Drug Resistant Salmonella
S. Typhimurium DT 104 Chromosomal Antibiotic Resistance (ACSSuT) Acquired Resistance to Fluoroquinolones and Trimethoprim Emerging in US "DT" : 'Definitive/Determinative Type'
has contributed to FBI in N.A., U.K., and Europe resistant to multiple antibiotics increased in England & Wales from 500 cases in 1991 to 4,006 in 1996 more prevalent in dairy cattle epidemic strain: DT104 (definitive type or phage type) 60 Md plasmid carries most antibiotic resistance
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Antibiotic Resistant Salmonella:
Multistate Outbreak of Multidrug-Resistant Salmonella Heidelberg Infections Linked to Foster Farms Chicken As of October 17, 2013, a total of 338 persons infected with seven outbreak strains of Salmonella Heidelberg have been reported from 20 states and Puerto Rico. 40% of ill persons have been hospitalized, and no deaths have been reported. Most ill persons (75%) have been reported from California. Epidemiologic, laboratory, and traceback investigations conducted by local, state, and federal officials indicate that consumption of Foster Farms brand chicken is the likely source of this outbreak of Salmonella Heidelberg infections. The outbreak strains of Salmonella Heidelberg are resistant to several commonly prescribed antibiotics. This antibiotic resistance may be associated with an increased risk of hospitalization or possible treatment failure in infected individuals
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Multi-Antibiotic-Resistant Genes ('Cassettes')
Series of antibiotic resistance genes in close proximity (ABCRes related pathogenic islands). Can be transferred to different strains together Selective enrichment by 1 antibiotic can lead to resistance from the other ABCRes genes on the cassette.
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Mechanisms of Antibiotic Resistance (ABCRes):
1. Influx mechanisms (ABC not allowed into cell) 2. Efflux mechanisms (ABC pumped out of cell) 3. Hydrolysis of ABC (ABC digested/inactivated) 4. ABC binding site is changed by genetic mutation (ABC can't bind) 5. ABC binding site is blocked by chemical modification (can't bind)
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Transfer/Dissemination of ABCRes Genes
1. Transformation - uptake of naked/free DNA 2. Conjugation - transfer of plasmid DNA 3. Transduction - DNA transfer by phage infection
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Old school thinking:
If you use antibiotic 'A' for animal feed, you may be enriching for bacteria with antibiotic 'A' resistance (and you wouldn't want to give people antibiotic 'A'). .....but everything would be OK because you can give people antibiotic 'B', or 'C', or 'D'.
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New model (based on data):
There are 'multi-drug resistance' genetic cassettes (like mini-pathogenic islands for multiple antibiotic resistances). .....so even if you give an animal antibiotic 'A', and it enriches for that bacteria with 'A-resistance', you end up increasing the number of bacteria that would also have 'B', or 'C', or 'D-resistances' because they are all together on the same chromosome within the same bacteria. So what happens if you give people antibiotic B, C, or D? (those bacteria will also be resistant to the antibiotics only given to humans).
Antibiotic disc assay Easy to identify antibiotic resistances Commonly used in the medical field Dr. Muriana uses them to identify ABCR in bacteria used as inocula for antimicrobial intervention studies (to recover inocula from background bacteria by plating on media containing antibiotics). In hospital setting, you would be interested in sensitivity, not resistance
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Human Pathogen Contamination of Animal Feeds:
Animal feed is the beginning of the food chain in the 'Farm-to-Fork' animal model Food production animals are the major reservoirs of numerous human foodborne pathogens Some farms are large enough that they process their own feed (mixer-feeder operations) Similar problems currently going on with 'pet treats' (Salmonella )
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Human foodborne pathogens from Food Production animals:
Campylobacter spp. (1-in-160 O:19 infections results in Guillian-Barré disease) Salmonella spp. (non-typhi) E. coli O157:H7 & non-O157 (STEC) Yersinia enterocolitica
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World-Wide Effort to Reduce Overuse of Antibiotics:
Infections with antibiotic-resistant bacteria result in increased mortality, morbidity, and social and economic costs. By 2050, an estimated 10 million deaths per year globally will be attributable to antimicrobial resistance, with a cumulative economic cost of US$100 trillion. Governments around the world have mobilized to address this pressing public health concern at the recent G20 Summit and the meeting of the UN General Assembly. Further, WHO has created a set of strategies to combat rising antibiotic resistance, which include improving sanitation and hygiene to reduce overall infection rates and optimizing the use (and preventing the overuse) of antibiotics in both humans and animals. There is increasing recognition that widespread antibiotic use in agriculture and aquaculture might contribute to the development of resistance to antibiotics commonly used in human medicine especially given the overlap of antibiotics used for these different purposes. For example, bacteria in animals that are treated with antibiotics can develop antibiotic resistance, and these bacteria, which might carry resistance genes, can then be transmitted from animals to humans. This cross-species transmission can occur through food, direct contact between humans and animals, or shared environmental sources such as contaminated water
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Highlights of the Proposed Rule:
New Current Good Manufacturing Practices Hazard Analysis and Risk-Based Preventive Controls (similar to HACCP)
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New Current Good Manufacturing Practices
(would establish CGMPs that specifically address the manufacturing, processing, packing, and holding of animal food). Hygienic personnel practices and training; Facility operations, maintenance, and sanitation; Equipment and utensil design, use, and maintenance Processes and controls; & Warehousing and distribution
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Hazard Analysis and Risk-Based Preventive Controls (similar to HACCP)
Each owner, operator, or agent in charge of a facility would be required to comply with the hazard analysis and risk-based preventive controls.
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Growth promotants (antibiotics, ABCs):
Antibiotics used at low doses in feeds are considered to improve the quality of the product with lower fat and higher protein content (Hughes et al., 2002). This is called "subtherapeutic" use because the antibiotics are used at levels lower than normally used to kill bacteria to eliminate a disease. Benefit is considered to decrease the environmental impact that livestock production has on the world by producing more livestock weight on less feed than would otherwise be needed without 'growth promotants'
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Various theories (not really understood why it works):(Antibiotics as 'growth promotants in animal feed')
Growth promotants help to decrease the amount of feed needed to produce food (reduce bacterial use of food nutrients in the gut; more feed is available to the animal). Sub-therapeutic levels of ABCs reduce bacterial inflammation of the GI tract saving the body a lot of 'energy' = translates to more growth
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Otherside of the Issue: (Antibiotics as 'growth promotants in animal feed'):
Antibiotic 'selective pressure' promotes the selection and presence of antibiotic-resistant bacteria. Antibiotic resistant bacteria can genetically transfer antibiotic-resistance genes among themselves (integrons/ transposons + ABC-resistance => mobile gene cassettes) Human foodborne outbreaks with antibiotic-resistant bacteria are getting more difficult to treat because of the greater appearance of these organisms
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FDA Phasing out Certain Antibiotic Use in Farm Animals
FDA is working with the industry to curtail the use of antibiotics (ABCs) as growth stimulants FDA Guidance for Industry (Dec. 11, 2013) lays out the strategy and starts the implementation period to phase out ABCs in certain animal feeds.
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FDA Guidance for Industry (GFI) #213:
New Animal Drugs and New Animal Drug Combination Products Administered in or on Medicated Feed or Drinking Water of Food-Producing Animals: Recommendations for Drug Sponsors for Voluntarily Aligning Product Use Conditions with GFI #209
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Veterinary Feed Directive (VFD):
Jan 1, 2017: FDA moving all human-medically important drugs (antibiotics) to the VFD drug process (to gain greater control over antibiotics given to animals). Attempt to combat antibiotic resistance derived from giving antibiotics in animal feeds as 'growth promotants'
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Growth promotants (antibiotics, ABCs):
Requesting drug companies to revise label claims, removing growth promotion and feed efficiency as allowable uses, effectively preventing veterinarians from writing VFD orders for these purposes. Farmers must work with a licensed veterinarian with whom they have an established veterinarian-clientpatient relationship (VCPR) in order to receive permission to order and use feed containing a VFD drug. This relationship must be established and recognized by the veterinarian prior to any VFD order being written. Feed distributors will require a valid VFD, provided by the veterinarian, prior to supplying customers with the regulated feed product. VFDs will need to be renewed every 6 months, based on renewal guidelines set by FDA. Not all antibiotics will be considered VFD drugs. The use of injectable antibiotics will not be affected. At this time, FDA has only moved antibiotics essential to human medicine and being fed to animals to VFD status. Also, as a part of the new FDA changes, water soluble antibiotics, which are important to human medicine, will now require a prescription from a veterinarian. This transition of water soluble drugs will include Aureomycin® Water Soluble Concentrate (Chlortetracycline).
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Fast Food Chains Announcing Elimination of Foods Grown with Antibiotics:
Fast food chains have a lot of 'clout' They didn't wait for FDA regulations to take effect They went forth and said "we are not buying foods that were raised with antibiotics in feed" This type of pressure was more effective than FDA 'voluntary requests
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Salmonella 'Quantification':
Constituent Update - July 8, 2022 FSIS to Include Salmonella Quantification in Raw Poultry Rinse Samples FSIS awarded a contract to bioMérieux to incorporate its non-enrichment quantification system for Salmonella, 'GENE-UP™ QUANT Salmonella,' into the agency's laboratory system. USDA-FSIS evaluated commercially available quantification systems and determined that this technology is the most appropriate for use in the high throughput FSIS laboratory environment. A future Constituent Update will announce when the method is available and when it will be implemented in all three FSIS food testing laboratories. Salmonella quantification is a significant step in FSIS' efforts to reduce Salmonella illnesses associated with poultry and to modernize the diagnostic capabilities of the FSIS food testing laboratories. Using this new system, FSIS will be able to measure the amount of Salmonella present in a regulatory sample, not solely its presence or absence.
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Listeria Monocytogenes:
Gram-positive, intracellular foodborne human pathogen Psychrotroph - Can grow from 4o to 44oC 15 species of Listeria: L. monocytogenes (humans) L. ivanovii (animals) 99% cases of human listeriosis considered foodborne Zero tolerance in ready-to-eat (RTE) foods (FDA & USDA) 25-30% mortality observed in large outbreaks Readily forms biofilms => processing facilities
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Early appearance of Listeria:
Bacterium monocytogenes was known to infect animals (initially rabbits, then sheep) as far back as 1920's (Murray). Name 'Listeria' was given by J. Pirie (1940).
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Pathogenicity in Humans (Listeria):
Unidentified organisms were also detected in human blood/tissue in the 1940's-1950's Organisms isolated from lesions in stillborn infants were identified as Listeria (J.H. Seeliger). It was not clear how humans were acquiring the organism
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Listeria Monocytogenes has a ________ incubation period compared to other FBI's
Longer
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The long incubation period presents a problem whereby:
1) The organism infection may be ongoing during this time 2) The ability to determine what food was involved; it may not be available any longer
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Significance of Listeriosis (Rates of Hospitalization):
The rate of hospitalization is higher than other FBI's by a significant margin
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Route of Infection Listeria
GI Infection (Peyer's Patches & M-cells, & GALT)
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GALT:
Gut Associated Lymphoid Tissue
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Non-specific uptake mechanism:(Listeria)
Peyer's Patches/M-cells Most bacteria Nothing extraordinary needed Specialized cells/region but they take up bacteria indiscriminately
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Non-specific attachment mechanism: (Listeria)
Intestinal epithelial surface Bacteria attach with bacterial fimbrae, pili, flagella to initiate infection Salmonella, E. coli Attachment induces uptake to start infection
Specific receptor on intestinal epithelial that bacteria bind to L. monocytogenes L. monocytogenes Internalin A protein binds to epithelial cells E-cadherin receptor protein
L. Monocytogenes Attachment and Inducement of 'Phagocytic-Like' Epithelial Cells
Internalin A mediates attachment to Ecadherin receptor on cells of the intestinal epithelium and other tissues. InlA is secreted, but is covalently bound to the peptidoglycan. Internalin A/B attach via 'zipper' method (as opposed to the 'trigger' method by T3SS). Internalin B mediates attachment to the 'Met Receptor' of hepatocytes and therefore mediates infection of the liver. InlB is secreted, loosely bound, often found in culture supernatant. Both, the E-cadherin and Met receptors are 'trans-membrane' proteins and induce phagocytic-like uptake by non-phagocytic cells by mobilizing actin polymerization.
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Listeria Monocytogenes (Intracellular pathogen on the move)
Listeria Monocytogenes (Intracellular pathogen on the move):
A)Direct Invasion • Single membrane vesicle B)Cell-to-Cell Spread • Double membrane vesicle • Lmono is doubly protected
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Hard to contain L. monocytogenes in membrane vesicles:
1.Phospholipase C (PLC) - digests vesicle lipid bilayer PI-PLC: phosphatidylinositol-specific phospholipase C PC-PLC: phosphaticylcholine-specific phospholipase C Dissolves lipid bilayer membranes 2.Hemolysin (Listerialysin, LLO) - forms pores (holes) in vesicle LLO: hemolysin (L. monocytogenes) More activity at acidic pH (as occurs in vesicles) Forms 'membrane pores' in the lipid bilayer
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How does Listeria monocytogenes get to all these tisues?
They take a 'biological taxi' ride in a Macrophage! or surviving entrapment in some other travelling professional phagocytic cell