Microbio Chapter 1

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1
How are prokaryotes able to live in such harsh environments?
They are very adaptable and resistant
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2
Mutualism
A relationship between two species in which both species benefit

Gut nutrient metabolism
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3
Amensalism
a relationship in which one organism is harmed and the other is unaffected

Antimicrobial defense on skin
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4
Commensalism
A relationship between two organisms in which one organism benefits and the other is unaffected

Skin cells as food source
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5
Neutralism
Neither species benefits or is harmed

Spores in soil
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6
Parasitism
A relationship between two organisms of different species where one benefits and the other is harmed

Tuberculosis and leprosy
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7
How do prokaryotes reproduce?
binary fission
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8
What are the examples of gram-negative prokaryotes?
Proteobacteria
Spirochete
CFB group
Planctomycetes]
Phototrophic bacteria
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9
What are the types of gram-positive prokaryotes?
Actinobacteria
Firmicutes
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10
What is the atypical kind of bacteria?
Tenericutes
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11
What are kinds of proteobacteria?
Alphaproteobacteria
Betaproteobacteria
Gammaproteobacteria
Deltaproteobacteria
Epsilonproteobacteria
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12
What are all Alphaproteobacteria?
Oligotrophs
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13
Oligotrophs
bacteria capable of living in low nutrient environments
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14
Prominent genera of alphaproteobacteria
Rickettsia spp.
Chlamydia spp.
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15
What does Rickettsia cause?
causative agents for Rocky mountain spotted fever & typhus fevers​
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16
What does Chlamydia cause?
causative agents ​for lymphogranuloma ​venereum (STD)​
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17
What do Rickettsia and Chlamydia have in common?
they are both obligate intracellular and must have host to be metabolically active
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18
What are all betaproteobacteria?
Eutrophs
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19
Eutrophs
require a copious amount of organic nutrients
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20
Prominent genera of betaproteobacteria
Bordetella spp.
Neisseria gonorrhea
Neisseria meningitides
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21
What does Bordetella cause?
causative agents whooping cough (pertussis) & kennel cough;​produces toxins to paralyze lung cilia
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22
What does Neisseria gonorrhea cause?
causative agent for gonorrhea STD​
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23
What does Neisseria meningitides cause?
causative agent for bacterial meningitis​
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24
Prominent genera of gammaproteobacteria
Pseudomonas
Pasteurella
Haemophilus
Vibrio
Legionella
Enterobacter family
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25
What does Pseudomonas aeruginosa cause?
common infection of wounds, urinary tract, & respiratory tract
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26
What does Pasteurella haemolytica cause?
causative agent for severe pneumonia in animals​
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27
What does Haemophilus influenzae cause?
causative agent for upper & lower respiratory infections (does not cause influenza)​
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28
What is special about the Vibrio spp.?
commonly found in alkaline environments such as ocean ports & lagoons
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29
What does Vibrio cholerae cause?
causative agent of cholera and common to water contamination​
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30
What does Legionella pneumophila cause?
causative agent for Legionnaire's disease and common to water contamination​
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31
What are groups of the enterobacter family?
coliforms and noncoliforms
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32
Coliforms
ferment lactose with acid and gas production
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33
Noncoliforms
fermentation of lactose is incomplete or absent
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34
What are some bacteria from the enterobacter family?
includes E. coli, & Salmonella spp.
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35
What is special about deltaproteobatceria?
Sulfate reducing bacteria​
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36
What are prominent genera of deltaproteobacteria?
Desulfovibrio orale
Parasitic Bdellovibrio spp.
Myxobacteria
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37
What does Desulfovibrio orale cause?
periodontal disease
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38
What is Myxobacteria?
soil dwelling "slime bacteria"
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39
What are prominent genera of epsilonproteobacteria?
Campylobacter
Helicobacter
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40
What does the Campylobacter spp. cause?
common to food poisoning
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41
What does the Helicobacter spp. cause?
commonly beneficial but can cause ulcers and stomach cancer in susceptible people
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42
What are the gram-negative nonproteobacteria?
Spirochetes
The CFB group
Planctomycetes
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43
What is special about spirochetes?
Gram (-) extremely thin and hard to stain & culture
have axial filament similar to flagella
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44
What are some types of spirochetes?
Treponema pallidum
Borrelia burgdorferi
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45
What does Treponema pallidum cause?
causative agent for​syphilis
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46
What does Borrelia burgdorferi cause?
Lyme disease
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47
Who makes up the CFB group?
Cytophaga spp.
Fusobacteria spp.
Bacteroides spp.
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48
What does Cytophaga spp. have?
gliding system for motility (mechanisms mostly unknown)​
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49
What does Fusobacteria spp. cause?
inhabit mouth and can cause various oral diseases
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50
What is significant about Bacteroides spp.?
30% of gut microbiome; lower levels correlated with obesity
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51
What is significant about planctomycetes?
Found in aquatic environments: fresh, salt, and brackish​
Reproduce via budding instead of binary fission​
Sessile cells - immobile with holdfast appendage (a)​
Swarmer cells - motile, unable to reproduce (b)
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52
What is significant about phototrophic bacteria
Utilize sunlight as main source of energy via photosynthesis​
Oxygenic - produce O2​
Anoxygenic - do not produce O2​
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53
What is an example of an oxygenic photosynthesizer?
Cyanobacteria
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54
What is significant about cyanobacteria?
highly adaptable and diverse; chlorophyll; uses as biosorbents and human nutrition
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55
What is an example of a cyanobacteria?
Microsystis spp.
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56
What do Microsystis spp. cause?
toxic algal blooms
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57
What are the types of anoxygenic photosynthesizers?
Purple
Purple non-sulfur
Green
Green non-sulfur
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58
What are types of gram-positive bacteria?
Actinobacteria
Firmicutes
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59
How do you put a gram-positive bacteria into either Actinobacteria or Firmicutes?
Grouping by guanine + cytosine content​
Phylum Actinobacteria - high G+C content (\>50%)​
Phylum Firmicutes - low G+C content (
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60
What are Actinobacteria?
High G+C gram positive bacteria
Extremely diverse​
Thin, filamentous to coccobacilli shaped​
Important to soil ecology​
Different peptidoglycans in cell wall​
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61
What are the prominent genera for actinobacteria?
Mycobacterium ​
Corynebacterium ​
Bifidobacterium​
Gardnerella
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62
What does Mycobacterium spp. cause?
causative agent for tuberculosis & leprosy
Acid fast (+) due to mycolic acid in cell wall
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63
What does Corynebacterium spp. cause?
Most are non-pathogenic; ​C. diphtheria is causative agent for diphtheria
Diaminopimelic acids in cell wall
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64
What is special about Bifidobacterium?
Filamentous & anaerobic​
Frequently used as probiotic
Extremely good for your gut
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65
What does Gardnerella vaginalis cause?
Causative agent for bacterial vaginosis
Gram variable: inconsistent stain results
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66
What is common among all firmicutes?
low G+C content​
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67
What are the prominent genera of firmicutes?
Clostridium​
Streptococcus​
Lactobacillus​
Enterococcus​
Bacillus​
Staphylococcus
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68
What is special about clostridium?
Endospore producers​
Soil dwelling​
Common food contaminant
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69
What does C. perfringens cause?
agent for food poisoning and gangrene
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70
What does C. tetani cause?
producer of neurotoxin and agent for tetanus​
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71
What does C. botulinum cause?
producer of botulinum neurotoxin
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72
What does C. difficile cause?
hospital infection, causes severe colitis​
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73
What are some kinds of lactobacillales?
Streptococcus​
Lactobacillus​
Enterococcus
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74
Lactobacillales contain?
bacilli and cocci
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75
What does Streptococcus pyogenes cause?
β-hemolytic cocci associated with pus production (pyogenic), strep throat
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76
What does Streptococcus pneumoniae cause?
causes pneumonia, respiratory infections, and a wide range of other diseases
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77
What is special about lactobacillus?
Facultative anaerobes​
non-spore formers​
significant component of gut ​microbiome​
starter cultures for ​yogurt, cheese, sauerkraut, etc.
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78
What is special about enterococcus?
Diplicocci arrangement​
Anaerobic respiration​
Commensal gut microbe​
Common UTI pathogen​
E. faecium
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79
What is special about Bacillus?
bacillus shaped aerobes or facultative anaerobes​
Endospore producers​
Important to industrial microbiology
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80
What does B. anthracis cause?
causative agent for anthrax
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81
What does B. cereus cause?
common food poisoning agent​
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82
What does B. thuringiensis cause?
producer of insecticide compounds​
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83
What is special about staphylococcus?
cocci shaped facultative anaerobes​
Halophilic​
Nonmotile
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84
What does S. aureus cause?
common agent of skin infections; some can produce enterotoxins for food poisoning​Some are very antibiotic resistant (MRSA & VRSA)​
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85
What does S. epidermidis cause?
common flora on skin; can cause infection to open wounds​
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86
What is special about mycoplasma?
no cell wall and do not retain crystal violet​ (tenericute)
pleomorphic​
Extremely small​
Cell wall antibiotics do not work​
Only classified by genome​
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87
What does M. pneumoniae cause?
agent for walking pneumonia​
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88
What are deeply branching bacteria?
Genera and species that are most common to the last universal common ancestor (LUCA)
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89
What are the prominent classes of the deeply branching bacteria?
Aquificae
Thermotogae
Deinococci
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90
What are Aquificae?
gram (-) hyperthermophiles living in hot springs and oven vents
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What are Thermotogae?
gram (-), hyperthermophilic anaerobes; sheath-like outer membrane
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What are Deinococci?
gram (+) polyextremophile (heat, vacuum, acidity tolerant)
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93
What are archaea?
Membranes with branched isoprene chains & ether linkages to phosphate head​
Walls of surface layer proteins​(some pseudopeptidoglycan)​
Genomes are much larger ​
Capable of methanogenesis​
Usually not in human microbiota​
Not directly associated with infectious diseases​
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What is the archaea membrane made of?
Esther linkages
branched tails
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95
What are some phylum of archaea?
Crenarchaeota​
Euryarchaeota
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96
What is special about crenarchaeota?
All aquatic microbes, many extremophiles
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What is special about Sulfolobus spp.?
thermophiles & acidophiles; facultative anaerobic; used in biotech for production of affitins
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What is special about Thermoproteus spp.?
strict anaerobic thermophiles; arguably deepest branching Archaea
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99
What is special about Euryarchaeota?
mostly methanogens & anaerobes
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100
What are some methanogens?
Methanobacteria​
Methanococci​
Methanomicrobia
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