Lec 6 - Hardy-Weinberg to Selections

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1
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If there IS a fitness advantage to one
genotype then (so would that mean there
is evolution?):
I. p2+2pq+q2≠1
II. The expected values from the HW
equation will match the observed
values
III.The expected values from the HW
equation won’t match the observed
values
IV. p+q=1
A. I, II, IV
B. I, III
C. III, IV
D. I, III, IV
E. II, IV

C. III, IV

2
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<p><span style="color: #NaNNaNNaN">Y</span><span style="color: #NaNNaNNaN">ou have a population of meerkats who have two</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">alleles at the locus that codes for nose color (pink</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">or black) the alleles are k and b. You observe a</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">population that has the following genotype</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">frequencies:</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">kk kb bb</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">0.36 0.48 0.16</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">What is the expected frequency of the kb genotype?</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">A. 0.1152</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">B. 0.6</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">C. 0.4</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">D. 0.48</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">E. It is impossible to tell from the</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">given information.</span></p>

You have a population of meerkats who have two
alleles at the locus that codes for nose color (pink
or black) the alleles are k and b. You observe a
population that has the following genotype
frequencies:
kk kb bb
0.36 0.48 0.16
What is the expected frequency of the kb genotype?
A. 0.1152
B. 0.6
C. 0.4
D. 0.48
E. It is impossible to tell from the
given information.

3
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Within a population of cats long hair (l) is recessive and short hair (L) is dominant (so LL
and Ll have short hair). If you know that 20% of the population has long hair which of the
following are true?
I. The allele frequency of the L allele is 0.8
II. 80% of the population has short hair
III.Because q=l=0.2, and p2+2pq+q2=1, then the allele frequency for l is
IV. Because the allele frequency for l is 0.447, then the allele frequency for L is 0.553

II. 80% of the population has short hair

4
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Within a population of cats long hair (l) is recessive and short hair (L) is dominant (so LL
and Ll have short hair). You know that 20% of the population has long hair. If you also
know that L has a frequency of 0.7. Is the population in HW at this locus?
A=yes
B=no
C=you can’t tell from these data

B=no

5
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You have a gene in a
population
A mutation happens
in a germline cell.
Now you have two
alleles. This is a SNP

If there’s no
selection and you
have a large
population what
should happen to
this new allele?
A. It would remain in the population
B. It would disappear from the population
C. It depends on whether it is dominant or
recessive
D. No way to tell

A. It would remain in the population

6
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What if there were
positive selection for
Allele 1 in population 2?

A. The frequency of
allele 1 would go up
in pop 2
B. The frequency of
allele 2 will go up in
pop2
C. The allele frequency
of 2 will stay the
same, but 1 will go
up in pop2.
D. This would suggest
that Allele 1 is
dominant.

A. The frequency of
allele 1 would go up
in pop 2

7
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<p><span style="color: #NaNNaNNaN">Positive vs. Negative Selection</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">36</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">Han Chinese and Tibetans split about 2750 years</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">ago. This chart shows frequency of single</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">nucleotide polymorphisms alleles in lots of</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">different genes between Han and Tibetans. The</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">color shows the number of SNPs at that locus. If</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">the gene lies along the diagonal there’s no</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">difference between number of SNPs in Han and</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">Tibetan peoples. If it’s far away it means those</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">mutations are over-represented in the population.</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">What can be said of the SNPS in EPAS1?</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">Allele frequency in Tibetans</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">Allele frequency in Han Chinese</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">A. They overrepresented in the Tibetans</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">B. They underrepresented in the Tibetans</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">C. They overrepresented in the Han</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">D. All of the above are possible</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">E. Wait that’s not even a real rainbow</span></p>

Positive vs. Negative Selection
36
Han Chinese and Tibetans split about 2750 years
ago. This chart shows frequency of single
nucleotide polymorphisms alleles in lots of
different genes between Han and Tibetans. The
color shows the number of SNPs at that locus. If
the gene lies along the diagonal there’s no
difference between number of SNPs in Han and
Tibetan peoples. If it’s far away it means those
mutations are over-represented in the population.
What can be said of the SNPS in EPAS1?
Allele frequency in Tibetans
Allele frequency in Han Chinese
A. They overrepresented in the Tibetans
B. They underrepresented in the Tibetans
C. They overrepresented in the Han
D. All of the above are possible
E. Wait that’s not even a real rainbow

A. They overrepresented in the Tibetans

8
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<p><span style="color: #NaNNaNNaN">These data show the birthweight of</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">babies in a recent study. What do you</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">predict about the genetic basis of this trait?</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">A. The heterozygous babies for a</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">birthweight gene probably weigh</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">about 3 kg</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">B. Homozygous dominant babies for a</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">birthweight gene probably weigh</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">about 3 kg</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">C. The trait is probably caused by the</span><span style="color: #NaNNaNNaN"><br></span><span style="color: #NaNNaNNaN">interactions of many genes</span></p>

These data show the birthweight of
babies in a recent study. What do you
predict about the genetic basis of this trait?
A. The heterozygous babies for a
birthweight gene probably weigh
about 3 kg
B. Homozygous dominant babies for a
birthweight gene probably weigh
about 3 kg
C. The trait is probably caused by the
interactions of many genes

C. The trait is probably caused by the
interactions of many genes