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infectious vs non-infectious disease
Infectious: bacterial, viral, parasitic
Non-infectious: reproductive, allergy, asthma, autoimmunity, cancer, cardiovascular, neurological
Non-specific defences (defenses of non-immune cells and tissuse)
physical barreirs
chemical and physiological barriers
microbiological barriers
these are intrinsic barriers ^
inflammatory barriers (covered by innate defences)
Physical barriers - skin
eg mucus membranes
Prevent approach and deny access to pathogens
Barrier:keratin (dead skin cells form waxy barrier
Acidity: skin secretions
Tight junctions between cells
Ailments driven by breach of physical barrier include allergy: eczema
chemical barriers
Sweat
Acid in stomach and urine
Lysozyme
breaks down carb
In tears, saliva, mucus
Antimicrobial proteins
Small peptides –defensins
Proteins- transferrin
microbial barriers
Commensal bacteria: normal ‘good’ bacteria
Adapted to grow in a particular niche
Inhabit skin, gut, mouth, nose
Elimination of this ‘normal flora’ can allow pathogenic bacteria to establish
Commensal bacteria can enhance skin barrier, help eczema, and in gut help inflammatory bowel disease
breaking/bypassing intrinsc barriers
Cut or break in skin
Direct injection via insect bite
Breakdown skin to enter directly (found in worms)
Ingestion of food or waterborne pathogens
Inhalation of air-borne pathogens
Infect epithelial cells in airway or gut
Infectious disease
Each microbe infects and causes disease by a different mechanism
Thus the immune system recognizes and targets each microbe differently
eg respiratory vs skin disease
innate immune system
Possessed at birth
Inborn rather than learnt through experience
Rapid response (hours)
Limited specificities
Constant during response
adaptive immune system
Capacity for adaptation
Improves through experience
Remembers
Slow response (days to weeks)
Numerous, highly selective specifities
Improves during response
Immune cells (innate)
All start from pluripotent hematopoietic stem cell from bone marrow
From there become progenitors in bone marrow (stage 2), then mature and can be found in blood or tissue
phagocytes
(uptake and destruction of microbes or particles)
Mature dendritic cells
Monocytes (circulate in blood, if recruited devleops into macrophage)
Macrophage (tissue)
Neutrophil (in blood)
mature dendritc cells
Antigen uptake inperipheral sites
Antigen presentation and cytokine production
Main function is activate adaptive immune system thru antigen presentation to T cell
monocytes
Phagocytosis and activation of bactericidal mechanisms
Antigen presentation and cytokine presentation
circulate in blood
macrophage
tissues
Phagocytosis and activation of bactericidal mechanisms
Antigen presentation and cytokine presentation
neutrophil
in blood
Phagocytosis and activation of bactericidal mechanims
First cell to be recruited to site of infection, has multilobbed nucleus
Most abundant white blood cells
immune cells in blood
adaptive:
b and t cells
innate:
granulocytes:
neutrophil
eosinophil
basophil
monocyte
platelets
immature dendritic cells
immune cells in tissue
adaptive: effector cells
plasma cell
activated t cell
innate
mast cell
macrophage
immature dendritic cell
Granulocytes
Eosinophil
basophil
mast cell
neutrophil
eosinophil
speacilised for killing of antibody-coated parasites (worm infections)
In blood, can migrate to tissue
Pathogenic in allergy and asthma
Has granules that stain pink with eosin
basophil
Promotion of allergic responses and augmentation of antiparasitic immunity
In blood, function unclear\granules contain histamine, cytokines, and distructive enzymes
mast cells
Release of granules containing histamines and active agents
In tissues, esp in skin (just underneath), mucosa granules containing histamine cytokines, and destructive enzymes
initial release of cytokines and Vasoactivators
brings in other immune cells
neutrophil
Phagocytosis and activation of bactericidal mechanism
First cell to be recruited to site of infection, has multilobed nucleus
Most abundant white blood cells
natural killers cells
directly kill infected cell
Releases lytic granules that kill virus infected cells
In blood, can migrate ti tissues, innate lymphocyte, functions similar to T cell
Kills infected cells (viral and bacterial) and tumor cells (altered self)
detecting innate activation
Fever
Increase in body temp
Caused by pyrogens
Endogenous (some cytokines, TNF, IL-1)
Exogenous (made by pathogen, lipopolysaccharide , LPS)
Act on hypothalamus to regulate heat production and heat loss
Fever restricts growth of pathogens, denatures proteins, speeds up repair mechanisms
eg (give syphillis patients malaria, causes fever, kills syphillis, then treat malaria, cured)
Decide whether to treat fever or not depend on if beneficial. Guideline shift depending on age
Inflammation signs
RUBOR—redness (increases blood flow to area, vasodilation)
TUMOR – swelling (increased fluid, vascular permeability)
CALOR—heat (increases blood flow to area, vasodilation)
DOLOR – pain (increased pain receptors)
5th is loss of function, added recently
inflammation vs fever
Inflammation is local:
blood flow,
immune cells,
pathogen killing,
wound healing
fever is centrally mediated
fever
fatigue
nausea
sweating
aches
process of infection (innate immunity)
break in barrier
entry of pathogen
innate immunity response
inflammation
fever
How does immune system recognise pathogen?
Recognise what is not you, then determine what is harmless or potentially harmful why recognising distinct motifs in building blocks of life (protein, sugar, lipds, DNA)
Innate receptors are pattern recognition receptors that recognise conserved microbial structures called pathogen associated molecular pattern s(PAMPs).
These can include outer membrane proteins, flagellar proteins, carbohydrates, DNA motifs.
Bacteria recognition
Gram negative:
Pattern recognition receptor TLR2 recognises peptidoglycan
TLR5 recognises flagellin protein
Gram positive:
Pattern recognition receptor recognised peptidoglycan (TLR2) and lipopolysaccharide (TLR4)
Toll-like receptors (TLR)
Family of pattern recgntion receptors
Highly conserved structure – monomer or dimer
Evolutionarily conserved, found in flies, sea urchin as well as humans.
humans have at least 10 members
conserved motifs in viruses
virus nucleic acids
• double stranded RNA (TLR3)
• single stranded DNA
• double stranded DNA
TLR specificities
TLR-2: cell wall of gram positive bacteria
TLR-3: dsRNA of viruses
TLR-4: lipopolysaccharide of gram negative bacteria
TLR-5: flagellin in bacteria
Binding of pathogen structures to pattern recognition receptors leads to:
Innate cell activation (eg macrophages- phagocytosie, cytokine secretion)
Inflammatory environment (eg cytokine secretion – blood flow, migration)
Adaptive cell activation (via dendritic cells- lecture 3)
innate effector mechanisms
macrophage activation by bacteria leads to either phagocytosis or secreted factors
effecotr mechanisms acheived through:
phagocytosis
Extracellular cell killing
Soluble factors
• complement system
• degranulation
• cytokines
• chemokines
Migration
Phagocytosis
Four steps:
Recognition (easy)
Adherance (difficult, improved via opsonisation)
Ingestion
Digestion
Last stages
Residual body secretion (N)
Antigen presentation (DC and M)
opsonization
Alteration of the surface of a pathogen or other particle so that it can be ingested by phagocytes. Antibody and complement opsonise extracellular bacteria for destruction by neutrophils and macrophages
Mediated by:
acute phase proteins
Complements
antibodies
natural killer cells
Kill intercellular pathogens
Activated by interferons secreted by virus infected cells
Activated NK cell releases granule contents, inducing apotosis in target cells
secreted factors
Cytokines,
Toxic mediators or enzymes
Lipid mediators
Chemokines
Factors can be ready made (degranulation, minutes) or require synthesis (transcription (DNA ot RNA), translation (RNA to protein), secretion – hours)
degranulation
Degranulation is process of granulocytes (neutrophils, eosinophil, basophil, mast cell). Most other immune cells secrete soluble mediator by other methods and must first initiate gene transcription
cytokines
Immunological hormones, also called interleukin (IL)
Mostly named in order of discovery (IL-1, IL-2 etc)
Other common families: interferon and tumour necrosis factor
Each with unique factors incl inflammation, cell recruitment, killinh
Cytokines act locally and systematically to induce protective responses
bacteria activated macrophages to produce cytokines: IL-1, IL-6, TNF
virus infected cells produced interferon (innate immunity)
Stops cellular machinery
Inhibits viral replication
Activates NK cell
Leads to immune cell recruitment
Make the cell a target for killer T cell and NK cell
complement
Family of more than 2p proteins produced in liver
Activation of pathway initiates a cascade reaction
Lead to 3 options:
Inflammation
Opsonisation
Lysis
Recruitment- extravasation
2 specific signals and locations: blood vessels by sites and gradient on tissue
Rolling: cell weakly binds ti selectin, rolls to site of infection
Tight binding: strongly binds by LFI 1
Diapedesis: migrates through barrier
Migration: chemokine gradient guides cell to site of infection
lymphatic spread and adaptive immunity
lymphocytes at home
Looking for activation
activating lymphocytes
TCR, BCR and many forms of antigen
B cell responses
Complement, opsonisation, neutralisation
T cells and antigen presentation
APC, antigen location, MHC 1 and 2
helper and cytotoxic T cell responses
Pathogen-specific functions
Lymphocytes at home (B and T cell)
B cell:
Mature in bone marrow, circulate in blood and lymph nodes after maturity
Produces antibodies
Humoral immunity (soluble factors, in fluids)
T cell:
Made in bone marrow, migrate to thymus to mature
Interact with APC (must interact to become activated)
Cell-mediated immunity (as require cell interaction
Activation of lymphocytes
Antigen= antibody generating = any substance that induces an adaptive immune response (bad)
B cell
Each b cell expresses unqiue BCR (B cell receptor)
BCR recognises antigen directly
The binding site on the antigen is the epitope
When activated, B cells secrete the BCR as an antibody
2 different antibodies made by 2 different B cells can bind the same antigen (recognise different things in the same antigen)
Antigen B cell recognises incl. Proteins, sugars, lipids, small molecules
B cell receptor (BCR)
cells are activated --> proliferate-->differentiate into plasma cells (antibody factory)--> antibodies go to site of infection where each different antibody binds its specific epitope
BCR is an antibody (aka immunoglobiulin/Ig)
Upon activation, becomes antibody whose function is determined by constant region
specificity is specific to epitope, constant region (blue) is so it can be recognised by self, and not also killed
Antibody functions:
Neutralisation
Blocks action of toxin
Blocks invasion of pathogen
Opsonisation
Coats pathogen
Promotes phagocytosis
Promote NK killing
Promote mast cell activation
Complement activation
Starts classical pathway
Antibody isotopes:
B cell are polyclonal (many isotopes). Infection-specific function determined by isotope (Isoyope change function of antibody)
5 isotopes:
IgM
IgD:
IGG
IgA
IgE
IgM
First isotpe produced
Best at complement actibvvation
Large (5 antibodies)
Mainly in blood
IgD
Developmental
Function not really known (so unimportant for this course)
IgG
Good at most things
All three functions
Small, in blood and tissues
Crosses placenta, breast milk
NK cell killling, stops invasion
Main antibody produced
IgE
Mast cell activation
Opsonisation
Coated antigen activates mast cells, eosinophils, basophils
Pathogenic in allergy
Important in worm infections
T cell:
Each T cell expresses unique TCR (T cell receptor)
TCR recognises antigen when presented by another cell (antigen presenting cell, APC, usually dendritc cell (DC))
When activated, T cell interact directly with other cells
Antigens in T cell recognises= peptides (small pieces of protein)
activation of T cell
Antigens enter through site of infection --> picked up by APC --> taken to lymph node and inspected by T cell --> T cell that recognises antigen proliferate and begin immune response
Extracellular antigens:
extracellular antigens are phagocytosedand loaded onto MHC class II molecules. (bacteria, toxins, virus, worms etc)
intracellular antigen are loaded onto MHC class I molecules. (virus, tumour etc)
cytotoxic T cell
CD8 molecular that binds MHC class 1, recognises intercellular antigens,
Goes to site of infection, uses lytic granules to trigger apoptosis in infected cell
helper T cell
CD4 molecule that binds MHC class 2, recognises extracellular antigen
Activation induces proliferation and CD4 helper T cell target pathogen
Four different forms of T helper cells depending on type of infection,
in general, role is to help, not directly target pathogen, must act through other cells
Bacteria and viruses
Help macrophage
Worms
Promote mucus production to expell worms in gut
Fungi, skin pathogens
Promotes neutrophils and antimicrobial peptide
Extracellular pathogens
Help B cell produce anitbodies
cytosolic pathogens
degraded in cytosol
peptides bind to MHC class 1
presented to effector CD8 T cells, causes cell death
intravesicular pathogens
degraded in endocytic vesicles
peptides bind to MHC class 2
presented to effector CD4 T cells, which activate macrophages to kill intravesicular bacteria and parasites
extracellular pathogens and toxins
degraded in endocytic vesicles
peptides bind to MHC class 2
presented to CD4 T cells which activate B cells to produce Ig to eliminate extracellular pathogen/toxin/viruses
integrated immune responses
Success:
Memory
Homeostasis in the gut
Vaccination
Failure
Pathogen escape
Hyper-sensitivity
Homeostasis in the gut
The gut deals with billion of microbes daily, many PAMPS, yet has no immune response
cells maintain homeostasis:
Paneth cells: antimicrobial peptides
Goblet cells: mucus
Epithelial cells: tight junctions
Dendritic cells can do phagocytosis and activate T and B cells by extending into thelumen side of epithelial cells
regulatory T cell (Treg) and paneth cells
Regulatory T cell (Treg) is a specilised T helper cells.
Treg turns off immune cells, prevents excessive immune response
Paneth cell is a good example of how one alteration can disrupt homeostasis and lead to disease
Paneth cell is pattern recognistion receptor, when recognises PAMPs, antimicrobial peptides production reduced, larger immune response
immune memory and reinfection
Contracted lymphocytes become memory cells
Upon reinfection, memory cells are activated, leading to faster, larger response
Antibodies that are produced are antigen specific,
over time as response gets better and better, switch to isotypes that are much better/functional for the specific infection
IgM vs IgG
IgM produced more on first infection, IgG produced more on second infection (as IgG gets more effective the more its activated, IgM doesn’t)
first vs second infection
First infection
Naive B and T cells (never been activated)
Second infections
Memory B and T cells
More antigen specific
Expand faster
Improved function
vaccination
Memory is used for vaccination
Induction of protective adaptive response w/o infection
May induce antibodies (B cells) or T cells (helper or cytotoxic)
Use all or part of pathogen in vaccine
Live, attenuated (whole pathogen, alive but cannot instigate infection, replicate)
Killed (dead whole pathogen, cannot infect but has PAMPs, eg in rabies vaccine)
Protein/toxin antigen (subunit of pathogen, part of pathogen with PAMP, immune system recognizes only that PAMP)
mRNA of antigen (nuclei acid message of the antigen
COVID-19 Vaccination
Vaccination is mRNA vaccine for spike protein on covid-19
MRNA put in lipid carrier for protection during injections, dissolved in muslce of recipient
Viral nuclei acids act as adjuvant (PAMP), induce immune response
Cells produce spike protein
B cells produced anti-spike anitbodies
Must be redone to keep up protection
Immune evasion and pathogen escape
Some pathogens have developed strategies to evade immune response and establish infection Eg HIV
Error prone replication (keeps changing) eg HSV
Prevents MHC 1 expression (hiding)
And parasites:
W. bancroftic -
Immune suppression
T. gondii
Latent infection -
T. Bruceli (causes african sleeping sickness)
Antigenic variation (VSG)
african sleeping sickness (Trypanosoma bruceii): Antigenic variation
Surface of parasite covered with one protein
Variable surface glycoprotein (VSG)
surface of parasite covered with one
multiple forms of VSG but only one expressed at a time
antibodies kill parasites with one VSG
parasites change VSG so antibodies are ineffective.
antigenic drift
small changes, occur over time make immune response not as effective (normally maintin some protection)
seasonal flu
still retain some immunity
antigenic shift
major changes, occur at once
pandenic flu
little to no immunity
Can occur when two strains of the virus infect at same time, recombine to create new strain, mean much of immunity agaisnt original virus are ineffective.
Monoclonal antibodies
B cell clone (one specificity)
Fuse to immortalized cell
Large amounts of antibody with a single specifity
grown in lab
Used for diagnostics,
COVID
pregnancy
cancer
lupus
Therapeutics (immunotherapy)
Herceptin (breast cancer)
Keytruda (melanoma)
Tysabri (multiple sclerosis)
Humira (rheumatoid arthritis)
Dupixent (asthma)
Research
Hyper sensitivity
A disorder in which the immune system reacts inappropritly, usualluy bu responding to an antigen it normally ignores
These antigens are
Foreign and harmless (allergy)
Self proteins (autoimmunity)
Preventing autoimmunity and allergy
Lymphocytes that have TCR or BCR that recognise self to not mature that prevents autoimmunity
Early in ( and throughout ) life lymphocytes that recognise harmless antigen are tolerised (made non-responsive) that prevents allergy
Genetics and environment can impact these processes
Type 1 hypersensitivity
IgE mediated
Classic allergy
Allergen-specific IgE binds to IgE receptors on mast cells
Allergen: IgE binding to mase cells induces rapid degranulation
Histamine is released
These events cause the allergic reaction but to get to this point you need the allergen-specific IgE (where does the IgE come from)
sensitization stage
First exposure to allergen
Antigen presenting cells picks up allergen and presents to naive CD4 helper T cell
CD4 helper T cells become activated and proliferate
CD4 helper T cells differentiate into Th2 cells that produce IL-4, IL-5, IL-13 and support B cells
With the Th2 cell help, B cells produce allergen-specific IgE
allergic stage
After IgE response develops (weeks to years after sensitisation)
1. IgE on mast cells binds allergen
2. mast cells degranulate releasing histamine
3. histamine acts on locally to induce inflammation
eg for dust mites
house dust mites have Der p1 in their feces
Der p1 can cleave tight junctions between cells
thus, if breathed in, it can enter the lung tissue and induce an allergic response
Local anaphylaxis
only occurs in that location/tissue, local response
histamine works quickly on blood vessels
vasodilation (redness & heat)
increased permeability (swelling)
local reactions (depend upon the tissues involved)
reddening of skin
watering eyes
hives
digestive disturbances
mast cells also release factors (cytokines, prostaglandins), which are longer acting and cause the late phase reactions
systemic anaphylaxis
more widespread reactio
occurs when there is degranulation in airways (mast cells) or the blood (basophils)
causes airway constriction or extreme drop in blood pressure
life-threatening situation
Treat with adrenaline/epinephrine (e.g. EpiPen)
Site of mast cell activation by the allergen determine allergic condition
Skin
Urticaria (hives)
Lungs
Llergic rhinitis (hayfever) (upper airways)
Asthma (lower airways)
Gut
Food allergy
allergy medication
symptom relief
Targets the effects of mast cells activation
Doesn't treat underlying cause
immunotherapy
desensitization: treating allergy
Eg oral immunotherapy (OIT)
key aim is to increase the threshold for an allergic reaction
Prevent life-threatening consequences of accidental exposure.
Switch from IgE to IgG
Extremely low doses of allergen daily increase >44 weeks
Allergen picked up by DC
Change the outcome --> Th2 to anotehr subset
Change the Th subset balance
Chnage the outcome --> Th2 to anotehr subset
Epidemiology (disease in the population)
Eg skin – atopic dermatitis, lungs – asthma, gut – food allergy
Atopy – exaggerated IgE response; is a predisposition to allergy development
10-30% of people in developed countries have atopy
In New Zealand, 30-40% of people have some form of allergy.
In addition to IgE-mediated allergies, there are many other types.
Atopic respiratory diseases: asthma vs allergy
Both allergy and asthma, allergen is activating mast cells to release histamine, both have similar allergen types, both enter via inhalation, but have different outcomes (edema of nasal mucosa in allergy and bronchial constriction in asthma)
They differ in allergen size, meaning that they go to different places (in allergy go to upper lungs, in asthma go to lower lungs)
immunological response of asthma
Like other atopic diseases, there is sensitisation – now IgE is in the lung tissue
Next is acute asthma, with IgE-bound mast cells poised for activation by allergen
Factors released by the activated mast cells (including histamine)cause:
Vasodilation (standard allergic response)
Increased vascular permeability (standard allergic response)
bronchial smooth muscle constriction (block breathing)
mucus secretion (block breathing)
The continues presence of immune cells leasds to chronic asthama (caused by repeasted acute attack of cytokine and eosinophil products causing a sustained presence of immune cells in lungs, which can initate faster and stronger attack (since theyre already there) and cause changes to lung tissue)
Chronic inflammation leads to faster and larger response
Th2 cells and eosinophils become involved, that drive allergic response
what allergens can cause asthma
One sthat can get into tge lower airways
Eg cat dander
House dust mites
Some pollens
Mould
Can become allergen-dependent and Each person has their own triggers but common ones incl.
Stress
Exercise
Anger
Temp
Smoke
Strong odours
Pollution
Dust
Symptom incl
Wheezing
Shortness of breath
Tightness in chest
Cough
Can be sudden or continuous
clinical presentation of asthma
At the heart of the response is an IgE-mediated allergic response
If inject allergen into skin, a classic allergic response will occur mediated by IgE and mast cells
If the allergen enters the lungsm the allergic response can be measured by the peak expiratory flow rate (PFER) how hard can you breathe out
Like classic allergic responses at skin and in the gut, asthma attacks have an immediate phase (often histamine-driven) as well as a late phase (6-8hrs later) (prostaglandins, leukotrienes)
what happens in the lungs during an asthma attack
long-term consequences of uncontrolled asthma cause change to tissue itself:
Chronic inflammation (Th2 cells and eosinophils)
Airway hyperreactivity (part of allergy independent triggers, more sensitive)
Airway remodelling
(tissue area becomes thicker= less air to come in,
more mucus=less air
Permanent changes (due to uncontrolled asthma)
Airways become narrower
Increased smooth muscle tissue
Fibrosis /scarring leads to decreased elasticity
Increased blood vessel
asthma treatment
No cure, only treatment
Two common approaches
Relieve and attack
Prevent an attack
Treat the site (ie lungs) with an inhaler
Two main targets
Immune system
Bronchial smooth muscle cell
asthma meds
Symptom controllers
Long lasting beta-2 agonist
Preventer
Take everyday
Make airways less hyperactive
Corticosteroids
Relievers
Treatong attacks
Relax constricted bronchial msucles
No longer prescribed in nz unless in combo w/ corticosteroid
Combination
long lasting beta-2 agonist
Corticosteroid
most consistent protection
corticosteroids – target immune system (turn down); less airway reactivity
beta adrenergic receptor agonists – activate beta adrenergic receptors and relax bronchial smooth muscle cells
New asthma immunotherapies
Target very specific immune factors or pathways that drive Ige and esosinophils activation such as IL-4 or IL-4 signalaling (eg pitrakinra, dupilumab)
epidemiology of asthma
Over 600,000 Kiwis have asthma.
1 in 8 adults and 1 in 7 children take medication for asthma large numbers of children (~5000 in 2021) are being admitted to hospital with asthma. (MoH 2021)
Highest number of people being admitted to hospital with asthma are Māori, Pacific peoples and people living in the most deprived areas.
The cost of asthma to the nation is over $1 billion per year (2020).