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How are bacterial names written?
capital genus, lowercase species
What factors contribute to emerging infectious diseases?
overuse of antibiotics, increased population density, human-animal interaction, exotic pets, poverty, malnutrition, urbanization, climate change
Where do new infectious diseases come from?
85% from animals, 70% of those from wildlife
What are some negative impacts of zoonotic diseases?
threat to biodiversity of ecosystems, food security, farmers, ecotourism, economy
How can zoonotic diseases be prevented?
surveillance by training community to detect/report, improve diagnostics and control by quarantine, cull livestock, disinfection, and vaccination
Define sporadic
occurring occasionally, individually, scattered
Define outbreak
sudden increase in activity, disease, infection
Define epidemic
disease/condition affects a large number of people at once
Define endemic
expected “normal” incidence of disease transmitted at expected rate
Define pandemic
disease/condition occurs throughout population of country/world, plague
What is SARS?
severe acute respiratory syndrome, caused by SARS coronavirus, outbreak in Hong Kong 2002 nearly became pandemic, greatest economic impact
What is BSE?
bovine spongiform encephalopathy/mad cow, prion disease, UK had to cull 4.4 million cattle
What is H1N1?
highly pathogenic avian influenza/HPAI, 220 million birds culled, >60% fatality in humans
What contributes to the cost of disease?
lab costs like diagnostics, PCR, culture, cost of food lost, medicine costs like hospital stays, doctor visits, medicine, cost to clean facilities/equipment, cost of lost labor
What are the risk factors associated with farm practice?
dietary impact, water quality, worker/animal health, farm location/environment, equipment used, biosecurity practices, type of animal
How is disease controlled on farms?
remove deadstock quickly, add pre/pro/synbiotics in feed, treat waste, minimize stress, vet care, low sticking density
What are the risk factors associated with the processing plant?
carcass contamination via contact with hide, other carcasses or worker gloves, knives, clothing
What are the intrinsic parameters?
inherent properties of the animal’s tissue: pH, moisture content, nutrient content, red-ox potential, antimicrobial constituents, biological structures
How does pH contribute to disease risk?
different bacteria are inhibited/thrive in different pH environments
How does moisture content contribute to disease risk?
microbes are 80% water, their requirement is water activity, most fresh food has aw > .99
How does red-ox potential contribute to disease risk?
ease in which substrate gains/lose electrons, microbes are sensitive to this and grow in different ranges
What is ORP?
measure of tendency of a chemical species to acquire electrons and thereby be reduced
How does nutrient content contribute to disease risk?
microbes need water, energy source, vitamins, minerals, all of which are abundant in animal food
How do microbial constituents contribute to disease risk?
milk has some antimicrobials like lactoferrin, conglutinin and lactoperoxidase, eggs have lysozyme
How does biological structure contribute to disease risk?
natural covering of some foods provides protection such as skin covering, fresh cut more susceptible to colonization/growth
What are the risk factors associated with the host?
age, immunodeficiencies like AIDS chemotherapy, hep B/C, pregnancy, stress, nutrient deficiencies, fatty foods protect against stomach acid, antacid consumption
What bacteria should pregnant women avoid?
listeria, Toxoplasma gondii, EHEC 0157:H7, Salmonella
What are the stages of infection?
exposure, adherence, invasion, colonization, tissue damage
Which bacteria adhere via type 1 pili?
E. coli, Salmonella, Shigella
Which bacteria adhere via flagella?
Campylobacter jejuni, Salmonella
How do bacteria survive intracellularly?
resist innate immunity of lysozymes, resist acquired immunity, adapt to bacterially hostile environment, gain access to protected/nutrient environment
What is lethal dose?
LD50 is the cfu of pathogenic agent that kills 50% of test group
What are exotoxins?
released into surroundings, heat-labile, highly immunogenic/toxic, protein with a and b subunits
What are endotoxins?
toxic to specific hosts, heat stable, lipid a
What is quorum sensing?
cell-cell communication that helps make biofilms
What are sigma factors?
subunit of RNA polymerase needed to recognize the promoter
Describe the morphology of Campylobacter
gram (-), spiral, single flagella, microaerophilic
What are the common species of Campylobacter?
jejuni (99%), coli, fetus
What are the symptoms of campylobacteriosis?
most common cause of diarrhea, enteritis, colitis, pain, septic abortion, reactive arthritis, GBS where immune system attacks nerves
What role does flagella play in virulence of campylobacter?
adhesion/colonization, assembled by >40 genes, initiated by sigma factors
How does campylobacter invade?
receptor mediated endocytosis/coated pit formation
What is Cdt?
cytolethal distending toxin A-D in campylobacter, causes irreversible cell arrest, DNA damage, lose plasma membrane integrity
What are the secreted proteins of campylobacter?
campylobacter invasion antigen, need stimuli to secrete like fetal bovine serum
What role does iron play in campylobacter virulence?
iron normally tightly bound to lactoferrin/transferrin, bacteria grab it back and transfer it inside bacterial cell
How is campylobacter treated?
erythromycin antibiotics for severe cases, fluids
Describe the morphology of Salmonella enterica
gram (-), rod, facultative anaerobe
What are serotypes/serovars?
serological classification scheme based on surface proteins, O antigen readily recognized, H antigen is flagellar, specific combinations of O/H antigens are serotypes
What are some common serovars of Salmonella enterica?
enteridis, typhimurium, heidelberg, newport, hadar, agona, montevideo, oranienburg, muenchen, thrompson
What are the symptoms of salmonellosis?
diarrhea, fever, cramps, vomiting for 2-7d, onset 12-36h
How is Salmonella enterica transmitted?
fecal-oral via contaminated food, found in most species, especially reptiles/chickens
What is a type III secretion system?
>24 genes needle complex that transmits toxins into host cell
What are SPI?
Salmonella pathogenicity islands, cluster of genes for virulence factors
What is the role of SPI-1?
entry, needle formation, adherence, cytoskeleton rearrangement,
What is the role of SPI-2?
inhibit host defense by producing homocysteine/superoxide dismutase that inactivate toxic macrophage compounds, maturation/lysis of phagosome, intracellular bacterial replication, systemic infection
What are the genes in SPI-1?
invA, orgA, sipA, sipB, sipC, sopE
What are the genes in SPI-2?
spiC, ssaJ, sopB
What role does flagella play in Salmonella virulence?
middle is variable, switch from phase 1 to 2 helps avoid cell mediated immunity
What is the role of sipA SPI-1 effector protein?
binds actin, stabilizes filaments, allows actin polymerization, enhances Salmonella invasion
What is the role of sipC SPI-1 effector protein?
aids entry of others, G-actin to F-actin, aids cytoskeleton rearrangement/membrane ruffling
What is the role of sopB SPI-2 effector protein?
main virulence factor of Salmonella, enterotoxin increases Cl- and Na+ secretion into lumen, water follows ions out, causing diarrhea
What is membrane ruffling?
cytoskeleton proteins relocate to site of bacterial entry triggered by bacterial effector proteins, causing structural change/endocytosis
What is the role of TNF-a?
tumor necrosis factor alpha, induced by Salmonella flagella
How is Salmonella treated?
vaccinate chicks, human vaccine is heat denatured killed whole-cell bacteria
Describe the morphology of Escherichia coli
gram (-), motile, facultative aerobe, have fimbria/pili
What are some sources of Escherichia coli?
fecal flora of many animals, especially cattle, contaminated food
What are the virulence factors of Escherichia coli?
fimbriae/pili, hemolysins, siderophores, flagella, heat labile/stable toxins, LPS, capsules, K antigens, drug resistant plasmids
How are virotypes of Escherichia coli classified?
attachment pattern, effect of attachment, toxin production, invasion/translocation ability
What is localized adherence?
number of bacterial cells attached on a particular location of enterocyte surface
What is aggregative adherence?
distinct stacked brick pattern of bacteria cells
What is diffuse adherence?
bacteria uniformly cover entire cell surface
How does Escherichia coli invade?
type 3 secretion system
What are the major virotypes of Escherichia coli?
enterotoxigenic (ETEC), enteroinvasive (EIEC), enteropathogenic (EPEC), enterohemorrhagic (EHEC)
What are the heat labile toxins of ETEC?
similar to cholera, LT1 has human/animal origin, LT2 only in E. coli
What is the mechanism of heat labile toxins of ETEC?
one A subunit and five B subunits, internalized via endocytosis, increases intracellular cAMP, a membrane transport regulator, causing anion secretion/decrease NaCl absorption, causing diarrhea
What are the heat stable toxins of ETEC?
cysteine disulfide bonds for heat stability, STa methanol soluble, STb methanol insoluble
What is the mechanism of heat stable toxins of ETEC?
bind ST membrane receptor, activate GC-C, increasing cGMP, decreasing NaCl absorption, causing diarrhea
What are the colonization factor antigens of ETEC?
adhesins, 1 single protein subunit rigid rods, 2 at least two related adhesins, 3 bundle forming pilus, 4 multiple distinct fimbrial structures
How does EIEC infect cells?
plasmid mediated attachment, effector proteins secreted via type 3 system, endocytosis, vacuole lysis, infects adjacent cells
What is the mechanism of infection for EPEC?
a/e process by attachment with bundle forming pilus, microvilli disappear, protein injection that increases intracellular Ca, pedestal formation by actin accumulation
What are the effects of EPEC infection?
stx causes hemolytic uremic syndrome/kidney toxicity, diarrhea caused by loss of absorptive ability due to pedestal
What are the effects of stx from EHEC?
similar to EPEC, hemolytic uremic syndrome/kidney toxicity, 1 a subunit and 5 b subunits, a subunit inhibits protein synthesis and causes cell death
What are the major virulence factors of EHEC?
outer membrane proteins/ fimbriae adhesins, shiga toxins, hemolysin, LPS
How is EHEC treated?
no antibiotics because it would release all toxins at once, killing host, and kill other intestinal bacteria, increasing host absorption of toxin, no available vaccine
Describe the morphology of Listeria
gram (+), rods, motile, facultative anaerobe, no spores/capsule, beta hemolytic, favors cold, pH, and moisture ranges
What are some common species of Listeria?
monocytogenes, innocua, seeligeri, ivanovii, welshimeri, grayi
What are the serotypes of Listeria?
important ones 1/2a, 1/2b, 4b, division 1: 1/2b, 3b, 4b, 4d, 4e, division 2: 1/2a, 1/2c, 3a, 3c
How is Listeria transmitted?
establishes strains in food processing facilities, high risk in pregnancy/fetus, elderly, organ transplants, AIDS, cancer, cattle mastitis
How does Listeria monocytogenes infect cells?
InlA gene binds to E-cadherin, triggers actin cytoskeleton rearrangements to form tail that pushes them, phospholipases lyse phagosome,
How are Listeria monocytogenes biofilms formed?
extracellular polymericsubstance (EPS) matrix resistant to antibiotics, dependent on carbon availablity
What is the progression of perinatal infections of Listeria monocytogenes?
onset 4d-5w, spread throughout body via blood/phagocytes, cross placental barrier, 20-50% fatality
Describe the morphology of Shigella
gram (-), rods, facultative anaerobe,
What are the 4 species of Shigella?
dysenteriae, flexneri, boydii, sonnei
How is Shigella transmitted?
fecal-oral, only in human gut, food, fingers, feces, flies fomites, 100-200 will cause disease
What are the 2 stages of shigellosis?
early stage watery diarrhea due to stx, noninvasive colonization, fever due to neurotoxin, second stage adherence, invasion, more severe stx
What is the mechanism of infection of Shigella?
attachment via membrane ruffling, taken up via endocytosis with IpaD invasion plasmid, invade, survive host due to O antigen
Describe the morphology of Yersinia
gram (-), rods
What are the species of Yersinia?
enterocolitica, pseudotuberculosis, pestis
What are the major virulence genes of Yersinia?
Ail attachment-invasion locus, YadA binds integrins, fibronectin, collagen, laminin of host cells, Invasin binds integrins to help invade
What is the mechanism of infection of Yersinia?
invasin binds integrins, cell spreading over surface, actin polymerization, engulfment, later arthritis via HLA-B27 antigen
What are the effects of Yersiniosis?
onset24-48h, only enterocolitica/pseudotuberculosis cause gastroenteritis, sometimes followed by Reither’s syndrome arthritis