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Evolution
The change in inherited traits over successive generations in populations of organisms.
Genome
The complete set of DNA in an organism
Metabolic (Chemical) Reactions
Enzymes drive metabolic reactions
Cell
The smallest unit of life
Organism
A one-celled bacterium is an organism; Humans are multicellular organisms, composed of billions of cells
Population
Organisms of the same species that live in the same place, at the same time
Outbreak
A sudden rise or increase in the number of cases of a disease in a specific community, location, or season
Endemic
A regularly found, native, or constantly present disease
Epidemic
A sudden, unexpected increase in the number of disease cases in a region
Pandemic
A sudden, unexpected increase in the number of disease cases in a specific community, population, or region
Pathogen
Living or nonliving agent causing disease to its host
Virulence
Severity of disease
Susceptible
Infectious agent is novel or the host is immunocompromised
Resistant
The host has immunity (from a vaccine or from active immunity)
Reservoir
The reservoir of an infectious agent is the habitat in which the agent normally lives — humans, animals, or the environment
Vector
A vector is a living organism that transmits an infectious agent from an infected animal to a human or another animal
MIASMA Theory
Illness spread from “bad” air
Germ Theory of Disease
Theory that infectious diseases are caused by pathogenic microorganisms (“germs”). Four Postulates: 1) Association, 2) Isolation, 3) Causation, 4) Reisolation
Association (Germ Theory)
The suspected pathogen is in all sick individuals
Isolation (Germy Theory)
The pathogen is isolated from all other potential causes
Causation (Germ Theory)
The isolated pathogen is introduced into a healthy host and symptoms occur
Reisolation (Germ Theory)
The same pathogen is re-isolated from the host
Antibiotic
A chemical or drug that inhibits bacteria growth
Sanitation
Provision of clean water and waste disposal (sewage)
Hygiene
Personal practices that help to maintain health and prevent the spread of infectious diseases
Morbidity
The rate of disease in a population
Mortality
The death rate from a disease
R naught
The number of healthy people a sick person will infect, on average
Humoral model of disease
Illnesses (like cholera) = an imbalance of the 4 hormones
When was germ theory proposed?
In the late 1800s, because of tiny molecules observed on microscopes that we now know as germs
What evidence suggested bats are a Nipah virus reservoir?
They had antibodies for it in their blood but a low morbidity rate
3 methods used to monitor bats (animal reservoir)
monitoring symptoms
Sequencing viral genomes
Detecting antibodies
Spill-over-event
A pathogen overcomes the species barrier (“jumps”)
Cell Theory
Cells are the basic unit of life:
All organisms are made of 1+ cell
Cells are the basic unit of structure and function
All cells come from cells
Metabolism
All the chemical processes that occur within a living organism in order to maintain life
Prokaryotic Cell
NO membrane-bound nucleus (one chromosome)
Eukaryotic Cell
Has a membrane-bound nucleus
Mutations and Natural Selection
Processes that contribute to evolution
Epidemiology
The study of the distribution and determinants of health-related states or events (including disease), and the application of this study to the control of diseases and other health problems
Microbiome
The collection of all microorganisms that naturally live on and inside the human body
Antigen
A structure (usually protein) that raises an immune reaction
Innate Immune System
A nonspecific response and immediate; white blood cells, physical barriers, and chemical barriers
Adaptive Immunity
Built in response to an antigen; Lymphocytes (T-cells, B-cells, memory cells)
Saliva & Tears
Contain lysozyme (an enzyme that breaks down the bacterial cell wall)
Antibody-Mediated Adaptive Immunity
Immunity built by B-cell antibodies
Lymphocytes
Specialized White Blood Cells involved in Adaptive Immunity
Antibodies
Specific to each pathogen. It blocks the receptor from binding to the host.
Memory B-Cells
On call for re-exposure
Primary Immune Response
From a first exposure: fast innate response, slow adaptive response
Secondary Immune Response
From a re-exposure: larger and faster immune response from memory immune cells
Immunity
Resistance created by response to an antigen
Commensalism
Only benefit the bacteria BUT the human host is not harmed
Mutualism
Both the host and the bacteria benefit
Parisitism
The bacteria benefits and harms the human host
Cell Tropism
The specific affinity of a virus or other pathogen for a particular cell type or tissue within a host organism
Microbial antagonism
Competition in the microbiome
Endogenous infections
Caused by opportunistic pathogens within the host
Residential (Microbiata)
Stable and predictable
Transient (Microbiata)
Influenced by hygiene
3 Tenets of the Germ Theory
Microbes can cause illnesses in the body
Microbes can be spread from one person to another
A specific microbe exists for each illness
Communicable disease
Can be spread from person to person
Non-communicable disease
Cannot be spread from person to person
Primary Disease
Cannot live outside of humans
Accidental Disease
Not associated with humans but can cause disease
Opportunistic Disease
Causes disease when host defenses are compromised
Pathogenicity
The ability to cause disease
Capsule
Virulence factor, protects the cell
Infective Dose (n)
The amount of microbes it takes to get sick
Adhesins
Virulence factor, helps the cell attach to the host
Exotoxins
Virulence factor, interferes with vital host functions
Antiphagocytic Factors
Virulence factors that help pathogens evade phagocytes
Phagocytosis
“Cell eating” by white blood cells
4 Stages of Microbial Disease
Incubation
Prodromal
Invasion
Convalescent
Incubation
Initial contact with disease
Prodromal Stage
Vague discomfort
Period of Invasion
Height of infectious disease
Convalescent Period
Symptoms decline
SIR Model
Susceptible, Infected, Recovered
Infectious Agent
Pathogen
Host
Infected organism
Vehicle
Food or water
Fomite
Inanimate objects that carry disease
Natural Host
A living organism that normally harbors a pathogen
Intermediate Host
Amplifying host (ex: birds with bird flu)
Common Source Epidemic
Many people are exposed to the same infectious agent at the same time (ex: food poisoning)
Propogated Epidemic
Spread of disease from person to person
Anthroponotic Reservoir
Humans
Zoonotic Reservoir
Animals
Sapronoses Reservoirs
Non-living; soil, water
Horizontal Disease Transmission
From individual to individual in a population
Vertical Disease Transmission
From parent to offspring
Enogenous Infections
From outside of the host
Hospital vs. Community Acquired Infection
Infected in the hospital or not
Microbe
Microscopic Organism
Apoptosis
A process where a cell kills itself (used to destroy abnormal cells)