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first-line identification method. tells you: is it gram-positive (purple) or gram-negative (pink/red)?
Gram stain
3 multiple choice options
grow bacteria on specific media to observe colony morphology and growth patterns. automated systems (like Vitek) read growth curves and run biochemical tests to quickly ID species.
cultures
3 multiple choice options
a super-fast way to ID bugs by their protein fingerprint. think of it as bacterial CSI đľââď¸âvery accurate and FAST
MALDI-TOF
3 multiple choice options
once ID-ed, labs test which antibiotics the bacteria is sensitive/resistant to (think MIC testing, zone of inhibition, etc.)
susceptibility testing
3 multiple choice options
cell wall: thin peptidoglycan + outer membrane
staining result: donât retain violet â appear pink/red due to counterstain (safranin)
alcohol wash removes the crystal violet
Gram negative
3 multiple choice options
cell wall: thick peptidoglycan
staining result: retain the crystal violet â appear purple
alcohol wash canât remove itâthey hold onto that dye like their lives depend on it (because they kinda do)
Gram positive
3 multiple choice options
select all that apply:
what is in the Gram-positive cell wall?
1. peptidoglycan
2. teichoic acids
~90% of the cell wall; it's like the bricks and mortar
peptidoglycan
3 multiple choice options
give the wall structure and contribute to antigenicity (recognized by the immune system). these are species-specific; vary in amino acid content
teichoic acids
rare in Gram-positives (unlike Gram-negatives with rich outer membranes)
lipids
3 multiple choice options
THICK peptidoglycan. teichoic acids embedded in the wall. NO outer membrane, just one plasma membrane, and very little to no lipids
gram-positive bacteria
1 multiple choice option
THIN peptidoglycan. has outer membrane with LPS (lipopolysaccharide) â triggers immune responses/endotoxins, porins â transport channels. has periplasmic space between inner and outer membranes. more complex structure = more resistance to some antibiotics
gram-negative bacteria
1 multiple choice option
clusters like grapes
staphylo
3 multiple choice options
chains or pairs
strepto/entero
3 multiple choice options
Gram-positive cocci (purple, spherical). appear in clusters (think: "bunch of grapes")âthat's literally what "Sstaphyl" means.
non-spore forming - can also show up as singles, pairs, or short chains, but clusters are most classic
staphylococcus spp.
3 multiple choice options
the infamous one
causes severe infections, very virulent, coagulase positive
Staphylococcus aureus
3 multiple choice options
skin flora, opportunistic, coagulase negative
Staphylococcus epidermidis
3 multiple choice options
associated with UTIs, especially in young women, coagulase negative
Staphylococcus saprophyticus
3 multiple choice options
all are normal flora, especially on the skin and mucous membranes - but they're also survivorsâthey can live on dry surfaces like plastic and metal (think: hospital equipment)
Staphylococcus spp
3 multiple choice options
a slimy, sticky layer made by bacteria like Staph. formed of polysaccharides, proteins, and DNA. lets bacteria stick to surfaces (like catheters, pacemakers, artificial joints). once theyâre in this form, theyâre protected from the immune system, antibiotics (which canât penetrate well), and environmental stress
biofilm
3 multiple choice options
_________________ = chronic, hard-to-treat infections
S. epidermidis is notorious for forming these on indwelling medical devices
S. aureus also uses these to evade clearance, especially in prosthetic joint infections
biofilm
3 multiple choice options
a major nosocomial (hospital-acquired) pathogen. think: catheter infections, post-surgical wounds, ventilator-associated pneumonia.
Staphylococcus aureus
3 multiple choice options
breaks down hydrogen peroxideâhelps escape neutrophil killing.
catalase
3 multiple choice options
converts fibrinogen to fibrinâhelps form clots that shield bacteria.
coagulase
3 multiple choice options
surface protein that binds fibrinogen, promotes adhesion.
clumping factor
3 multiple choice options
"spreading factor" that breaks down connective tissue.
hyaluronidase
3 multiple choice options
cytolytic; destroy host cells.
alpha, beta, gamma, delta toxins
3 multiple choice options
destroys leukocytes, particularly neutrophilsâassociated with necrotizing infections.
leukocidin
3 multiple choice options
cause scalded skin syndrome (especially in neonates).
epidermolytic toxins
3 multiple choice options
heat-stable; cause food poisoning with rapid-onset vomiting.
enterotoxins
3 multiple choice options
lead to toxic shock syndrome (fever, rash, hypotension, multi-organ failure).
TSST-1,2: superantigens
3 multiple choice options
select all that apply:
what are some clinical diseases that come from Staphylococcus aureus?
1. pneumonia
2. bacteremia
3. skin/soft tissue infections
4. endocarditis
5. osteomyelitis
S. aureus is genetically adaptableâit gains __________________ and resistance genes easily.
virulence
3 multiple choice options
encodes PBP2a, an altered penicillin-binding protein that doesn't bind β-lactams effectively â leads to methicillin resistance. found on SCCmec, a mobile DNA element that can be transferred between strains.
mecA gene
3 multiple choice options
helps with adhesion, immune evasion
wall teichoic acid
3 multiple choice options
linked to CA-MRSA
Panton-Valentine leukocidin
3 multiple choice options
prevents neutrophil recruitment
chemotaxis inhibitory protein
3 multiple choice options
nosocomial MRSA became common in hospitals by 1990. __________________ emerged independently in people without traditional risk factors (e.g., kids, athletes, prisoners).
CA-MRSA
3 multiple choice options
â ď¸ CA-MRSA outbreaks:
Detroit 1980s: mostly in IVDU
1990s onward: kids, sports teams, jails
2000s: ______________________, skin infections, even fatal outcomes
necrotizing pneumonia
3 multiple choice options
mecA â PBP2a â _________________ (key resistance mechanism)
MRSA
3 multiple choice options
#1 culprit in prosthetic device infections. normal skin flora, but gets real shady when a catheter or implant is around. forms biofilms (aka "slime") that make it super hard to treat
Staphylococcus epidermidis
3 multiple choice options
skin flora, less common in disease, but has been isolated in bacteremias
Staphylococcus hominis
3 multiple choice options
major cause of urinary tract infections (UTIs)âespecially in young, sexually active women. uniquely resistant to novobiocin, which helps ID it in the lab. also linked to some GI infections
Staphylococcus saprophyticus
3 multiple choice options
doesnât produce the same array of toxins as S. aureus. no TSST, enterotoxins, or exfoliative toxins. still pathogenic, especially when devices are involvedâbut more of a stealthy saboteur than an aggressive attacker
coagulase negative Staphylococcus
3 multiple choice options
CoNS, especially S. epidermidis, make a _________________________ that sticks to plastic and foreign bodies (catheters, heart valves, prosthetics). this shields bacteria from antibiotics and immune system and makes infections chronic and hard to eradicate
polysaccharide-rich matrix
3 multiple choice options
select all that apply:
what are some clinical diseases that can come with coagulase negative Staphylococcus?
1. indwelling catheters & foreign bodies
2. bacteremia
3. pneumonia
4. skin infections
Gram-positive (purple on Gram stain), spherical (cocci), and grow in pairs or chains â hence the name which means twisted chain
so when you hear "chains of purple cocci," your mind should immediately go:
Streptococci
3 multiple choice options
Gram-positive, round cocci. arranged in chains or pairs (not clusters like Staph)
Streptococci
3 multiple choice options
select all that apply:
what is the classification of Streptococci based on?
1. hemolysis on blood agar
2. antigenic composition
3. growth/biochemical features
partial hemolysis â greenish hue (e.g., S. pneumoniae, viridans group)
Îą-hemolytic
3 multiple choice options
complete hemolysis â clear zone (e.g., S. pyogenes, S. agalactiae)
β-hemolytic
3 multiple choice options
Lancefield grouping: based on differences in cell wall carbohydrates. Groups A, B, C, D, G
antigenic composition
3 multiple choice options
sensitivity to bacitracin, optochin, bile solubility
growth characteristics
3 multiple choice options
partial breakdown of RBCs, leaves a greenish discoloration. think S. pneumoniae, S. viridans
alpha hemolysis
3 multiple choice options
complete lysis of RBCs. results in clear zones around colonies. think S. pyogenes (Group A Strep), S. agalactiae (Group B)
beta hemolysis
3 multiple choice options
Group A = S. pyogenes â β-hemolytic
Group B = S. agalactiae (not listed here but part of Group B) â β-hemolytic
Group D = now known as Enterococcus spp.
Groups C & G = less common in humans, sometimes zoonotic
Lancefield grouping based on surface antigens
3 multiple choice options
Gram-positive cocci in chains
β-hemolytic on blood agar (clear zones around colonies). bacitracin-sensitive (vs. Group B strep)
S. pyogenes
3 multiple choice options
surface protein; major virulence factor. inhibits phagocytosis.
molecular mimicry: antibodies can cross-react with heart tissue â rheumatic fever đŹ
M protein
3 multiple choice options
superantigens that cause fever, rash, toxic shock, and scarlet fever
streptococcal pyrogenic exotoxins
3 multiple choice options
hemolysins that destroy RBCs and WBCs
streptolysins O and S
3 multiple choice options
oxygen-labile and antigenic â ASO titer (used to diagnose recent strep)
streptolysin O
3 multiple choice options
classic in kids: fever, sore throat, swollen tonsils with exudates, tender anterior cervical lymph nodes. rapid test â detects Group A carbohydrate antigen
why treat? prevent rheumatic fever, not just relieve symptoms
pharyngitis
3 multiple choice options
caused by deep tissue spread or toxin release
invasive infections
3 multiple choice options
rapid tissue death ("flesh-eating bacteria"), surgical emergency
necrotizing fasciitis
3 multiple choice options
caused by SPE toxins, sandpaper rash, strawberry tongue, and circumoral pallor. happens after strep pharyngitis
scarlet fever
3 multiple choice options
SPEs act as superantigens. sudden high fever, hypotension, multi-organ failure. like Staph but associated with bacteremia and tissue necrosis
Streptococcal Toxic Shock Syndrome
3 multiple choice options
strep throat is super common in kids and can lead to acute rheumatic fever (autoimmune, from M protein mimicry) and post-streptococcal glomerulonephritis (immune complex-mediated, can follow pharyngitis or impetigo)
đ treatment: _____________________ (even if symptoms resolveârheumatic fever is the main thing we're preventing)
penicillin
3 multiple choice options
S. pyogenes on beast mode.
rapid progression, intense pain, out of proportion to appearance. skin turns red â purple â black.
needs surgical debridement + IV antibiotics. often associated with streptolysin O, SPE toxins, and M protein
flesh eating bacteria
3 multiple choice options
Gram-positive cocci in chains or pairs (often appear as lancet-shaped diplococci under the microscope). Îą-hemolytic on blood agarâ greenish discoloration due to partial hemolysis. optochin-sensitive and bile-solubleâ lab tests used to distinguish from S. viridans
Streptococcus pneumoniae
3 multiple choice options
#1 virulence factor in Streptococcus pneumoniae: ___________________
helps it evade phagocytosis (slick like Teflon đ§ź). there are over 90 capsule serotypes, which is why we need vaccines like:
PCV13 (pediatric conjugate vaccine)
PPSV23 (adult polysaccharide vaccine)
polysaccharide capsule
3 multiple choice options
S. pneumoniae is the #1 cause of đŤ ____________________ especially in the elderly, smokers, or post-viral illness
ârust-colored sputumâ, sudden onset fever, lobar consolidation. can lead to sepsis if untreated
community-acquired pneumonia
3 multiple choice options
S. pneumoniae is the #1 cause of đ _________________
major cause in children (top 3 with H. influenzae and M. catarrhalis). ear tugging, fussiness, fever
otitis media
3 multiple choice options
S. pneumoniae is the #1 cause of đ _________________
purulent nasal discharge, facial pain/pressure. often post-viral URI in kids and adults
sinusitis
3 multiple choice options
select all that apply:
what other serious infections (especially in immunocompromised, elderly, or asplenic patients) can be caused by S. pneumoniae?
1. bacteremia â sepsis
2. meningitis
3. endocarditis
4. peritonitis, skin infections
treatment for S. pneumoniae: often started with _________________________ for meningitis/pneumonia
amoxicillin or high-dose amoxicillin-clavulanate for otitis or sinusitis
resistance is rising, esp. to macrolides (e.g., azithromycin), so susceptibility testing matters
ceftriaxone
3 multiple choice options
Gram-positive cocci arranged in pairs, short chains, or sometimes singly
often mistaken for strep morphologically, but was previously classified as Group D Streptococcus
Enterococcus spp.
3 multiple choice options
E. faecalis = ~80-90% of human infections
E. faecium = 5-10% (but this one tends to be more drug-resistant đ)
Enterococcus spp.
3 multiple choice options
not their strong suit. they're not toxin-producing showboats like S. aureus or S. pyogenes. but they thrive under pressure, like low nutrient environments, high antibiotic use đ, and damaged mucosal barriers
virulence
3 multiple choice options
Enterococcus:
multi-drug resistance, especially to vancomycin (â VRE = vancomycin-resistant enterococci), _______________, and aminoglycosides in some strains
penicillins
3 multiple choice options
live naturally in soil, water, food, and human gut flora (especially the colon)
Enterococci are __________________ â they strike when barriers are down (e.g., ICU, catheter use, immunosuppression)
opportunists
3 multiple choice options
Enterococcus is consistently ranked #2 or #3 most common ____________________ (right behind E. coli and S. aureus)
hospital-acquired infections
3 multiple choice options
select all that apply:
what are some infections that Enterococcus can cause?
1. UTIs
2. bacteremia
3. endocarditis
4. intra-abdominal & pelvic infections
5. wound Infections
select all that apply:
what are some rare infections Enterococcus can cause?
1. meningitis
2. respiratory tract infections
Enterococcus may _____________________ with other organismsâespecially in polymicrobial infections like intra-abdominal abscesses. â think: Enterococcus + E. coli = big problem for abdominal sepsis
synergize
organisms that stain purple with Gram stain (thick peptidoglycan wall â ), thrive without oxygen, and tend to be spore-forming rods, especially in the Clostridium genus
Gram positive anaerobes
3 multiple choice options
anaerobic = oxygen is toxic to them, spore-forming = hard to kill (heat-resistant, survive in soil/dust), and Gram-positive bacilli = long rods under the microscope
Clostridium spp.
3 multiple choice options
select all that apply:
what are the key species in Clostridium spp.?
1. Clostridium botulinum
2. Clostridium difficile
3. Clostridium tetani
4. Clostridium perfringens
toxins are their superpower. these bugs don't rely on invading tissues like Staph or Strepâthey drop toxins that wreck you from the inside out.
virulence
3 multiple choice options
found in soil, water, dust, and animal GI tracts. spores are everywhere, especially in natural environments
Clostridium botulinum
3 multiple choice options
Clostridium botulinum produces neurotoxins that block ______________ release at the neuromuscular junction. this leads to flaccid paralysis
acetylcholine
3 multiple choice options
select all that apply:
what are some botulism presentations?
1. foodborne botulism
2. wound botulism
3. infant botulism
associated with honey ingestion (infants under 1 year should NOT eat honey!)
floppy baby syndrome
3 multiple choice options
tetanospasmin toxin inhibits inhibitory neurotransmitters (GABA & glycine) in CNSâ causes uncontrolled muscle contraction (spastic paralysis)
Clostridium tetani
3 multiple choice options
entry via wounds (esp. dirty puncture wounds). incubation: hours to months. CNS symptoms - trismus (lockjaw), spasms, rigidity, and headache. autonomic NS symptoms - arrhythmias, profuse sweating, and fluctuating BP
tetanus
3 multiple choice options
contains tetanus toxoid, which is a lifesaver in global health. boosters are needed every 10 years.
DTaP/Tdap vaccine
3 multiple choice options
most commonly isolated Clostridium species (20-40% of isolates). anaerobic, spore-forming, gram-positive bacillus. it's a common environmental and GI inhabitant, but when it turns up the heat, it's dangerous.
Clostridium perfringes
3 multiple choice options
Clostridium perfringens produces Îą-toxin (a phospholipase) â destroys cell membranes, causes hemolysis, and tissue necrosis. the destruction is what gives you ________________âa rapid, smelly, tissue-melting disaster
gas gangrene
3 multiple choice options
select all that apply:
what are the clinical manifestations of Clostridium perfringens?
1. wound infections
2. intestinal disorders
3. systemic disease
asymptomatic colonization: not all carriers have disease. watery diarrhea: classic early sign.
pseudomembranous colitis = raised yellow-white plaques of dead cells and bacteria in the colon. toxic megacolon: colon dilation + inflammation = life-threatening.
Clostridium difficile
3 multiple choice options
C. difficile is a hospital and LTCF superstar. risk factors include broad-spectrum antibiotics like clindamycin, ______________________, or cephalosporins. these wipe out your normal flora â C. diff takes over.
fluoroquinolones
3 multiple choice options