2. Quaternary structure. Mechanisms maintaining the conformation of proteins. Relation between the structure and the function of proteins – medical importance: defects in receptors (familial hypercholesterolemia, diabetes insipidus); diseases due to impaired conformation (prion disease, Alzheimer’s disease); molecular diseases (sickle cell anemia); defects in the post-translational modification of proteins (scurvy and glycated hemoglobin). Structure of hemoglobin. Isoelectric point, precipitation of protein. Denaturation. Electrophoresis. Methods for protein examination – electrophoresis, chromatography, etc. Electrophoresis of plasma proteins – fractions

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22 Terms

1

Describe the quaternary structure of proteins and provide an example. Be sure to include the types of bonds that stabilize this structure and the importance of this organization for protein function.

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2

Explain the concept of positive cooperativity in oxygen binding to hemoglobin and how the quaternary structure contributes to this phenomenon. Illustrate how interactions between subunits affect hemoglobin’s oxygen affinity and why this is advantageous for oxygen transport.

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3

Besides hemoglobin, what other proteins exhibit a quaternary structure? What are their functions?

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4

List the different types of bonds and interactions that contribute to maintaining protein conformation. Describe the characteristics of each type of bond and explain how they contribute to protein structural stability.

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5

What is the role of molecular chaperonins in protein folding? Explain how chaperonins assist proteins in achieving their native conformation and prevent misfolding or aggregation.

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6

What are intrinsically disordered proteins? Why are they important Discuss their structure and their role in various biological processes.

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7

How does the three-dimensional structure of a protein determine its function? Provide specific examples of how shape, charge distribution, and the presence of binding sites influence protein function.

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8

Describe how defects in protein receptors can cause diseases. Refer to familial hypercholesterolemia and diabetes insipidus as examples. Explain how mutations in genes encoding receptors can alter their structure and compromise their ligand-binding ability, leading to cellular dysfunction and disease.

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9

List the different categories of diseases caused by protein defects. For each category, provide specific examples of diseases and describe the molecular mechanisms underlying their pathogenesis.

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10

Explain how mutations in the β-globin gene cause sickle cell anemia. Describe the specific mutation, how it affects hemoglobin structure, and the physiological consequences at cellular and tissue levels.

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11

What are thalassemias? How are they classified? Describe the different types of thalassemia and the molecular mechanisms that lead to reduced or absent production of specific globin chains.

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12

Draw a schematic diagram of hemoglobin, highlighting its subunits, heme groups, and oxygen-binding sites. Describe the structure of each component and how it contributes to hemoglobin’s overall function

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13

What are the allosteric effectors that influence hemoglobin’s oxygen affinity? Describe their mechanisms of action. Explain how these effectors modulate oxygen binding to hemoglobin, regulating oxygen release to tissues based on metabolic needs.

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14

What are fetal hemoglobin (HbF) and hemoglobin A2? What are their characteristics and functions? Discuss the structural and functional differences between these hemoglobins and adult hemoglobin (HbA), as well as their physiological importance.

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15

Define the isoelectric point (pI) of a protein. Explain how the pI influences protein behavior in an electric field and how it can be used to separate proteins.

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16

What factors can cause protein precipitation? Describe the mechanisms leading to decreased protein solubility and precipitation out of solution.

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17

What is meant by protein denaturation? What are denaturing agents and how do they work? Explain how denaturation affects protein structure and function and the molecular mechanisms underlying the action of denaturing agents.

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18

Describe the principle of electrophoresis and its applications in studying proteins. Explain how proteins are separated based on their charge and size in an electric field and the different types of gels used in electrophoresis.

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19

What is SDS-PAGE? What information can be obtained from this technique. Describe the role of SDS in protein denaturation and how SDS-PAGE allows the determination of protein molecular weight.

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20

Besides electrophoresis, what other methods are used to separate and analyze proteins? Provide a brief description of techniques like chromatography, mass spectrometry, and immunological assays.

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21

What are the main protein fractions separated in plasma protein electrophoresis? List the most important proteins in each fraction and briefly describe their functions.

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22

How can the analysis of plasma protein electrophoretic fractions be useful in diagnosing diseases? Provide examples of how alterations in specific plasma protein levels can indicate various pathologies.

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