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Biodiversity
The variety of life on Earth
Taxonomy
The naming and grouping of organisms
Systematics
The science of figuring out relationships between organisms
Phylogeny
The evolutionary history and relationship of a group of organisms
Taxon
Any named group (ex. Mammalia, Panthera, etc.)
Clade
A special group — an ancestor plus all its descendants
Binomial nomenclature
Two-part name, Genus + species epithet
Order of taxonomic hierarchies
Domain → Kingdom → Phylum → Class → Order → Family → Genus → species || Dear King Phillip Came Over For Great Soup
The 3 Domains of Life
Bacteria = diverse prokaryotes
Archaea = prokaryotes genetically distinct from Bacteria and more closely related to Eukarya
Eukarya = eukaryotes; protists, fungi, plants, animals
Anatomy of a Phylogenetic Tree
Root = Ancestral population from which all the other species originate
Node = Branching point representing the most recent common ancestor of descent lineages
Branch = Lineage
Morphology
Using fossils and anatomy to understand evolutionary relationships
Molecular Data
Using DNA, RNA, and proteins to understand evolutionary relationships
Biochemistry
Using metabolic pathways to understand evolutionary relationships
Homologies
Phenotypic and genetic similarities due to shared ancestry
Analogies
Similarities between organisms that are due to convergent evolution
Convergent Evolution
Similar environmental pressures / natural selection leading to evolution of similar structures in different evolutionary lineages
Monophyletic Group
Common ancestor + ALL descendants
True clades
Polyphyletic Group
Organisms from different lineages grouped together WITHOUT their most recent common ancestor
Paraphyletic
Common ancestor + SOME, but not all, descendants
Ancestral Character
A trait that was already present in an earlier ancestor (“older model“)
Derived Character
A trait that evolved later from the ancestral condition (“newer model“)
Shared Ancestral Trait
Ancestral trait shared by multiple taxa
Shared Derived Trait
Derived trait shared by multiple descendants of a common ancestor
Most useful for identifying clades
Plesiomorphy
An ancestral trait retained in a lineage
Apomorphy
A derived trait that evolved from the ancestral condition
Newly evolved character
Synapomorphy
Shared derived trait inherited from a common ancestor
Most important for tree-building
Autopomorphy
Derived trait unique to one lineage
Distinguishes the lineage but doesn’t group it with another organism
Homoplasy
Similar trait that evolved independently in different lineages
Convergent evolution
Outgroup
Closely related species or group that is outside the group being studied (ingroup)
Maximum Parsimony
Favors the tree that requires fewest evolutionary changes
Simplest explanation for observed character data
Why Phylogeny Matters
Classification
Conservation
Research
Prediction