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NRF2 (Nuclear factor erythroid 2-related factor 2)
a transcription factor that upregulates the expression of key antioxidant enzymes
superoxide dismutases
enzymes that dismutate superoxide O2- to H2O2
glutathione peroxidases
enzymes that use glutathione as a reducing agent in reducing H2O2 to H2O and O2
peroxidases
enzymes that reduce peroxides
catalase
enzyme that converts H2O2 to H2O and O2
NADPH
electron donor, needed to power the antioxidant enzymes
KEAP1
a scaffold protein that binds to NRF2 and CUL3 targets NRF2 for ubiquitination, and thus degradation
E3 ubiquitin ligase
enzymes that tag proteins with ubiquitin, marking them for degradation
K1696
a potent and specific inhibitor of KEAP1–NRF2 interaction
anchorage-independent colony formation
the ability of cells to grow and divide when suspended in a soft, semi-solid medium as opposed to being attached to a surface
ALDH3A1
enzyme that oxidizes aldehydes, having a primary role in increasing NADH levels and sensitizing KEAP1-dependent cells to NRF2 activation
dehydrogenase
enzyme that catalyzes the redox reactions by transferring electrons
NADH
reducing agent that donates electrons to complex 1 of the electron transport chain, whose levels are increased by NRF2 activation and ALDH3A1 activity
sulfenic acid
R-SOH
sulfonic acid
-R-S(=O2)-OH
glutathionylation
the addition of a glutathione through a disulfide bond
nitrosylation
the transfer of nitric oxide to cysteine residue
CUL2FEM1B
an e3 ubiquitin ligase complex formed by CUL2 and FEM1B
FNIP1
substrate of CUL2FEM1B
degron
amino acid sequences recognized by protein complexes like the e3 ubiquitin ligases and that signals it for degradation
metabolic shuttles
transport vital molecules across membranes
citrulline and ornithine
amino acids that replenish fumarate from arginine
acetylcarnitine
compound that transports fatty acids to mitochondria for breakdown
NADH shuttle
glycerol-3-phosphate
AMPK, adenosine monophosphate-activated protein kinase
regulates energy metabolism, senses energy status by monitoring AMP:ATP ratio. when AMP:ATP is high (energy low), ampk is phosphorylated and activated, causing it to turn off anabolic (energy-consuming) reactions and turn on catabolic (energy-releasing) reactions
mTORC1
protein complex that is master regulator of cell growth, promoting anabolic processes (protein, lipid, nucleotide synthesis) upon sensing of abundant nutrients, energy
NLRP1
protein that triggers inflammation upon cellular stress
CARD8
protein that acts as inflammasome sensor, detecting signs of infection and cellular damage
capase-1
protease that processes inflammatory cytokines, triggering pyroptosis
pyroptosis
inflammatory cell death triggered by infections, toxins, or cellular stress
thioredoxin
antioxidant protein that reduces oxidized proteins and scavenges ros, maintaining redox balance
NACHT-LRR region
protein domain of nlrp1, consisting of nacht domain (located in center of protein, binds and hydrolyzes atp) and leucine-rich repeat domain (located at c-terminus of protein, senses signals associated with damage, interacts with nacht in the absence of signals to inhibit protein)
dithiothreitol
compound that is a strong reducing agent, breaks disulfide bonds
FIIND domain
protein domain in clrp1 and card8 domains; in nlrp1, ct domain generated by cleavage is active part of inflammasome
JSH-23
inhibitor of nuclear factor kappa 3, a regulator of inflammation
glutathione disulfide (GSSG)
the oxidized form of glutathione
SoNar
molecule that becomes fluorescent upon binding NADH/NAD+
iNAP
molecule that becomes fluorescent upon binding NADPH/NADP+
high-throughput
the ability to process a large number of samples in a short amount of time
KP372-1
a compound that consumes NAD(P)H, generating oxidative stress
NQO1
a protective enzyme that helps detoxify reactive quinones and combat oxidative stress in the body
LbNOX
enzyme that oxidizes NADH to NAD+, increasing the NAD+/NADH ratio
TPNOX
enzyme engineered from lbnox that oxidizes NADPH
LOXCAT
fusion protein of lactate oxidase and catalase that converts lactate to pyruvate
NADH dehydrogenase
complex I of the ETC, transfers electrons from NADH to ubiquinone
NDI1
a yeast enzyme that oxidizes nadh to nad+ without generating proton-motive force
NDUFS2
core component of complex I
auxotrophic
being unable to synthesize a necessary organic compound
metformin
medication used to treat type 2 diabetes by inhibiting mitochondrial respiration
IACS-010759
an inhibitor of complex I, causing reductive stress as nadh is unable to be oxidized to nad+
therapeutic index
a measure of drug's relative safety, comparing concentration for therapeutic effect to concentration for toxicity
oligomycin
inhibitor of mitochondrial ATP synthase
rotenone
inhibitor of mitochondrial complex I
BAY 87-2243
inhibitor of oxidative phosphorylation by activating glycolytic enzymes and pyruvate dehydrogenase kinase, which inhibits conversion of pyruvate to acetyl-coA
ascorbic acid
vitamin c, an antioxidant
core-shell nanostructure
nanoparticle with inner core of one material and outer shell of another
CdTe quantum dots
cadmium-tellurium nanocrystals with fluorescent properties
hydropersulfides
reducing agents stronger than thiols
carcinoma
a type of cancer that begins in epithelial cells (form protective layers on internal and external surfaces)
triple-negative breast cancer
an aggressive type of breast cancer that lacks estrogen receptors, progesterone receptors, and her2 receptors (human epidermal growth factor receptor 2 receptors)
doxorubicin
a chemotherapy that disrupts topoisomerase activity
L-2 hydroxyglutarate
a metabolic byproduct of cellular respiration that is produced in high quantities under hypoxia