Microscopic Examination of Urine Part I

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24 Terms

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RBCs in Urine Microscopy

  • Size: ~7 μm; no nucleus

  • Normal range: 0–2 RBCs/hpf

  • In concentrated urine, RBCs appear small and crenated

  • Rarely seen unless there's contamination or pathology

<ul><li><p class=""><strong>Size</strong>: <span style="color: red">~7 μm; <strong>no nucleus</strong></span></p></li><li><p class=""><strong>Normal range</strong>:<span style="color: #0af02d"> <strong>0–2 RBCs/hpf</strong></span></p></li><li><p class="">In <strong>concentrated urine</strong>, RBCs appear <strong>small and crenated</strong></p></li><li><p class=""><span style="color: red"><strong>Rarely seen</strong> unless there's contamination or pathology</span></p><p class=""></p></li></ul><p></p>
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Ghost Cells in Urine

  • Seen in dilute (hypotonic) urine

  • RBCs swell and lyse, but membranes remain intact

  • Appear as empty, faint outlines

  • Do not count in RBC estimate — just note as “present”

Contextual note:
Ghost cells result from osmotic lysis and may indicate prolonged urine dwell time in hypotonic conditions. Their presence helps explain low RBC counts when hematuria is suspected.

<ul><li><p class=""><span style="color: red">Seen in <strong>dilute</strong></span><span style="color: #09f538"><strong> (hypotonic)</strong></span><span style="color: red"><strong> urine</strong></span></p></li><li><p class=""><strong>RBCs swell and lyse</strong>, but membranes remain <strong>intact</strong></p></li><li><p class=""><span style="color: red">Appear as <strong>empty, faint outlines</strong></span></p></li><li><p class=""><strong>Do not count</strong> in RBC estimate — just <strong>note as “present”</strong></p></li></ul><p class=""></p><p class=""><strong>Contextual note</strong>:<br><span style="color: red">Ghost cells result from osmotic lysis and may indicate prolonged urine dwell time in </span><span style="color: #0af26c">hypotonic conditions</span><span style="color: red">.</span> Their presence helps explain low RBC counts when hematuria is suspected.</p>
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Red Blood Cells Confused with…

  • Yeast: Budding; resists acetic acid lysis

  • Oil droplets: Highly refractile, variable in size

  • Air bubbles: Refractile and shiny; vary in size

  • Fat globules: Persist with acetic acid; ID via Sudan III or polarized light

Confirmatory tip:
Add 1 drop of acetic acid to 1 drop of sediment — if RBCs disappear, blood was present. Yeast and fat will remain.

<ul><li><p class=""><span style="color: #12f2ea"><strong>Yeast</strong></span><span style="color: #0ef30f">:</span> Budding; <span style="color: red"><strong>resists acetic acid lysis</strong></span></p></li><li><p class=""><span style="color: #f86a09"><strong>Oil droplets</strong>:</span><span style="color: red"> Highly <strong>refractile</strong></span>, variable in size</p></li><li><p class=""><span style="color: #99bfed"><strong>Air bubbles</strong>:</span> <span style="color: red"><strong>Refractile</strong> and <strong>shiny</strong></span>; vary in size</p></li><li><p class=""><span style="color: #ddf309"><strong>Fat globules</strong></span>: Persist with acetic acid; ID via <span style="color: red"><strong>Sudan III</strong> or <strong>polarized light</strong></span></p></li></ul><p class=""></p><p class=""><strong>Confirmatory tip</strong>:<br>Add 1 drop of <strong>acetic acid</strong> to 1 drop of sediment — if RBCs <strong>disappear</strong>, blood was present. Yeast and fat will <strong>remain</strong>.</p>
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Hematuria Interpretation Pitfalls

  • Hematuria = RBCs in urine

  • Results may not match urine color or dipstick:

    • 1–4 RBCs/hpf, strip may be negative (threshold ≈ 5+ RBCs/hpf)

    • Positive dipstick, no visible RBCs → likely lysed RBCs, Hgb, or Mgb

Contextual note:
Dipstick detects peroxidase activity, so free hemoglobin or myoglobin can trigger a positive even in the absence of intact RBCs on microscopy.

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Crenated RBCs vs WBCs

  • Crenated RBCs: Shrink in hypertonic urine, appear granular

  • May be mistaken for WBCs, but are smaller in size

  • Acetic acid will lyse RBCs but not:

    • Yeast

    • Oil droplets

    • WBCs

<ul><li><p class=""><span style="color: red"><strong>Crenated RBCs</strong>: </span>Shrink in <span style="color: #07f21f"><strong>hypertonic urine</strong>, </span>appear <strong>granular</strong></p></li><li><p class=""><span style="color: red">May be <strong>mistaken for WBCs</strong></span>, but are <span style="color: rgb(18, 239, 49)"><strong>smaller</strong> in size</span></p></li><li><p class=""><strong>Acetic acid</strong> will <strong>lyse RBCs</strong> but <strong>not</strong>:</p><ul><li><p class=""><strong>Yeast</strong></p></li><li><p class=""><strong>Oil droplets</strong></p></li><li><p class=""><strong>WBCs</strong></p></li></ul></li></ul><p></p>
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Dysmorphic RBC

  • Have cellular protrusions, variable size, may be fragmented

  • Suggest glomerular bleeding

  • Very rare finding; can occur post-strenuous exercise

  • Requires confirmation by a second MLS or technical specialist

<ul><li><p class="">Have <span style="color: red"><strong>cellular protrusions</strong></span>, variable size, may be<span style="color: red"> <strong>fragmented</strong></span></p></li><li><p class="">Suggest <span style="color: #06fa13"><strong>glomerular bleeding</strong></span></p></li><li><p class=""><span style="color: #fef10a"><strong>Very rare</strong> </span>finding; can occur post-strenuous exercise</p></li><li><p class=""><span style="color: red"><strong>Requires confirmation</strong> by a <strong>second MLS or technical specialist</strong></span></p></li></ul><p></p>
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WBCs in Urine Microscopy

  • Size: ~12 μm

  • Normal range: 0–5 WBCs/hpf

  • Usually neutrophils (PMNs):

    • Have granules and multi-lobed nuclei

    • Nucleus may be hard to see due to granules

<ul><li><p class=""><strong>Size</strong>:<span style="color: red"> ~12 μm</span></p></li><li><p class=""><strong>Normal range</strong>: <span style="color: #0ce7f5"><strong>0–5 WBCs/hpf</strong></span></p></li><li><p class=""><span style="color: #24f307">Usually <strong>neutrophils (PMNs)</strong>:</span></p><ul><li><p class="">Have <strong>granules</strong> and <strong>multi-lobed nuclei</strong></p></li><li><p class="">Nucleus may be hard to see due to granules</p></li></ul></li></ul><p></p>
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WBCs in Varying Urine Osmolarity

  • Hypertonic urine:

    • WBCs shrink, may not degranulate

    • May yield false-negative leukocyte esterase strip test

  • Hypotonic urine:

    • WBCs swell → form glitter cells

    • Glitter cells show Brownian movement

    • Not clinically significantjust water-swollen WBCs

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Pyuria

  • Defined as WBCs in urine

  • Indicates infection or inflammation in the genitourinary (GU) tract

  • Possible causes:

    • Bacterial infection

    • Glomerulonephritis

    • Lupus erythematosus

    • Interstitial nephritis

    • Tumors

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Mononuclear Cells in Urine

  • Rare in routine urinalysis

  • Lymphocytes:

    • Small, may mimic RBCs

    • Seen in early renal transplant rejection

  • Monocytes, macrophages, histiocytes:

    • May appear vacuolated or contain inclusions

If large number of Mono nuclear refer to cytology

<ul><li><p class=""><span style="color: red"><strong>Rare</strong></span> in routine urinalysis</p></li><li><p class=""><span style="color: rgb(5, 240, 232)"><strong>Lymphocytes</strong>:</span></p><ul><li><p class="">Small, may <strong>mimic RBCs</strong></p></li><li><p class=""><span style="color: rgb(16, 239, 33)">Seen in <strong>early renal transplant rejection</strong></span></p></li></ul></li><li><p class=""><span style="color: rgb(8, 243, 229)"><strong>Monocytes, macrophages, histiocytes</strong>:</span></p><ul><li><p class="">May appear <span style="color: rgb(9, 251, 57)"><strong>vacuolated</strong></span> or contain<span style="color: rgb(16, 248, 80)"> <strong>inclusions</strong></span></p><p class=""></p></li></ul></li></ul><p><span style="color: red">If large number of Mono nuclear refer to cytology</span></p>
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Eosinophils in Urine

  • Not normally present in urine

  • Significant if >1% of total WBCs

  • Visualized with Hansel’s or Wright’s stain

Associated with:

  • Drug-induced interstitial nephritis (most common)

  • UTIs

  • Parasitic infection (Schistosoma)

  • Renal transplant rejection

<ul><li><p class=""><span style="color: red"><strong>Not normally present</strong> in urine</span></p></li><li><p class="">Significant if <strong>&gt;1%</strong> of total WBCs</p></li><li><p class="">Visualized with <span style="color: #f3860b"><strong>Hansel’s</strong> or <strong>Wright’s </strong></span><strong>stain</strong></p></li></ul><p class=""><strong>Associated with</strong>:</p><ul><li><p class=""><span style="color: #0efe3e"><strong>Drug-induced interstitial nephritis</strong> (most common)</span></p></li><li><p class=""><span style="color: #0efe3e"><strong>UTIs</strong></span></p></li><li><p class=""><span style="color: #0efe3e"><strong>Parasitic infection</strong> (<em>Schistosoma</em>)</span></p></li><li><p class=""><span style="color: #0efe3e"><strong>Renal transplant rejection</strong></span></p></li></ul><p></p>
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Epithelial Cells in Urine

  • Line the genitourinary tract

  • Three main types:

    • Squamous

    • Transitional

    • Renal tubular

<ul><li><p class=""><span style="color: red"><strong>Line the genitourinary tract</strong></span></p></li><li><p class="">Three main types:</p><ul><li><p class=""><span style="color: #0ef854"><strong>Squamous</strong></span></p></li><li><p class=""><span style="color: #0ef854"><strong>Transitional</strong></span></p></li><li><p class=""><span style="color: #0ef854"><strong>Renal tubular</strong></span></p></li></ul></li></ul><p></p>
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Squamous Epithelial Cells

  • Largest cells in urinary sediment

  • Prominent nucleussize of an RBC

  • Easily seen at 10X; may appear folded/clumped

  • Originate from vagina, female urethra, lower male urethra

  • No pathological significance — normal sloughing

<ul><li><p class=""><span style="color: red"><strong>Largest cells</strong> in urinary sediment</span></p></li><li><p class=""><span style="color: red"><strong>Prominent nucleus</strong></span> ≈ <span style="color: #07ea35">size of an RBC</span></p></li><li><p class=""><span style="color: #14d9f2">Easily seen at <strong>10X</strong>;</span> may appear <strong>folded/clumped</strong></p></li><li><p class="">Originate from<span style="color: #0afd11"> <strong>vagina, female urethra, lower male urethra</strong></span></p></li><li><p class=""><span style="color: #f58e0e"><strong>No pathological significance</strong></span> — normal sloughing</p></li></ul><p></p>
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Clue Cells

  • Squamous epithelial cells coated with Gardnerella vaginalis

  • Appear granular and irregular

  • Indicative of bacterial vaginosis (when numerous)

  • Not typically reported on urine microscopy — seen on vaginal wet preps

<ul><li><p class=""><span style="color: red"><strong>Squamous epithelial cells</strong></span><span style="color: #06e127"> coated with <strong>Gardnerella vaginalis</strong></span></p></li><li><p class="">Appear<span style="color: red"> <strong>granular and irregular</strong></span></p></li><li><p class="">Indicative of <span style="color: #e9fa0a"><strong>bacterial vaginosis</strong></span> (when numerous)</p></li><li><p class=""><span style="color: #fa0606"><strong>Not typically reported</strong> on urine microscopy</span> — seen on <strong>vaginal wet preps</strong></p></li></ul><p></p>
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Transitional Epithelial Cells

  • Smaller than squamous, but slightly larger than RTE

  • Have centrally located nuclei

  • Appear in various shapes: spherical, polyhedral, caudate

  • Often have a well-defined edge

  • Can be difficult to distinguish from renal tubular epithelial (RTE) cells

  • Originate from the lining of the renal pelvis, calyces, ureters, and male urethra

  • increased amounts seen in catheterization

<ul><li><p class=""><span style="color: red"><strong>Smaller than squamous</strong></span>, but slightly <span style="color: #08f249"><strong>larger than RTE</strong></span></p></li><li><p class="">Have <span style="color: red"><strong>centrally located nuclei</strong></span></p></li><li><p class="">Appear in various shapes: <span style="color: red"><strong>spherical, polyhedral, caudate</strong></span></p></li><li><p class="">Often have a <span style="color: red"><strong>well-defined edge</strong></span></p></li><li><p class="">Can be difficult to distinguish from <strong>renal tubular epithelial (RTE) cells</strong></p></li><li><p class=""><span style="color: #08f01a"><strong>Originate from the lining of the renal pelvis, calyces, ureters, and male urethra</strong></span></p></li><li><p class=""><strong>in</strong><span style="color: red"><strong>creased amounts seen in catheterization</strong></span></p></li></ul><p></p>
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Abnormal Transitional Cells

  • Vacuoles or irregular nuclei may suggest:

    • Viral infection

    • Malignancy (e.g., bladder cancer)

  • Refer to cytology for evaluation

  • Stains: Wright’s or Sedi stain

<ul><li><p class=""><span style="color: red"><strong>Vacuoles</strong> or <strong>irregular nuclei</strong> may suggest:</span></p><ul><li><p class=""><span style="color: #07fb1a"><strong>Viral infection</strong></span></p></li><li><p class=""><span style="color: #07fb1a"><strong>Malignancy</strong></span> (e.g., <strong>bladder cancer</strong>)</p></li></ul></li><li><p class=""><span style="color: #fa9204"><strong>Refer to cytology</strong> for evaluation</span></p></li><li><p class="">Stains: <span style="color: #ed07d0"><strong>Wright’s</strong> or <strong>Sedi stain</strong></span></p></li></ul><p></p>
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Renal Tubular Epithelial (RTE) Cells

  • Smaller than squamous, larger than WBCs

  • Shape: cuboidal, columnar, or round (often flattened edges)

  • Nuclei are typically eccentrically located

  • 0–2/hpf = normal

  • >2/hpf = renal tubular damage or necrosis

    • Causes: infection, drug toxicity, heavy metals, allergic reactions

  • RTE’s reabsorb filtrate, therefor can take on various colors

    • bilirubin → yellow color

    • Hemosiderin → yllw-brn

<ul><li><p class=""><span style="color: red"><strong>Smaller than squamous</strong>, <strong>larger than WBCs</strong></span></p></li><li><p class=""><strong>Shape</strong>:<span style="color: red"> cuboidal, columnar, or round (often <strong>flattened edges</strong>)</span></p></li><li><p class=""><span style="color: red"><strong>Nuclei</strong></span> are typically <span style="color: red"><strong>eccentrically located</strong></span></p></li><li><p class=""><span style="color: #21ed54"><strong>0–2/hpf</strong> = normal</span></p></li><li><p class=""><span style="color: #f59999"><strong>&gt;2/hpf</strong> = <strong>renal tubular damage or necrosis</strong></span></p><ul><li><p class="">Causes: <span style="color: #1cf80c"><strong>infection</strong>, <strong>drug toxicity</strong>, <strong>heavy metals</strong>, <strong>allergic reactions</strong></span></p></li></ul></li><li><p class=""><span style="color: red">RTE’s reabsorb filtrate, therefor can take on various colors</span></p><ul><li><p class=""><span style="color: yellow">bilirubin → yellow color</span></p></li><li><p class=""><span style="color: yellow">Hemosiderin → yllw-brn</span></p></li></ul></li></ul><p></p>
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Oval Fat Bodies

  • RTE cells that have absorbed lipids from glomerular filtrate

  • Lipid appears highly refractile; often seen with fat droplets or fatty casts

  • Confirm with:

    • Sudan III or Oil Red O (triglycerides/neutral fat)

    • Polarized light (cholesterol → Maltese cross pattern)

  • May be confused with starch or crystals

<ul><li><p class=""><span style="color: #fb7506"><strong>RTE cells</strong> that have absorbed <strong>lipids</strong> from glomerular filtrate</span></p></li><li><p class=""><span style="color: #ede10b">Lipid </span>appears <span style="color: #cddc09"><strong>highly refractile</strong></span>; often seen with <strong>fat droplets</strong> or <strong>fatty casts</strong></p></li><li><p class="">Confirm with:</p><ul><li><p class=""><span style="color: red"><strong>Sudan III</strong> or <strong>Oil Red O</strong> </span>(triglycerides/neutral fat)</p></li><li><p class=""><span style="color: #NaNNaNNaN"><strong>Polarized light</strong></span> (cholesterol → <span style="color: #0cfedd"><strong>Maltese cross</strong> pattern)</span></p></li></ul></li><li><p class=""><span style="color: red">May be <strong>confused with starch or crystals</strong></span></p></li></ul><p></p>
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Lipiduria

  • Presence of fat in urine

  • Confirm with Oil Red O or Sudan III stain

Associated with:

  • Nephrotic syndrome (glomerular damage)

  • Tubular necrosis

  • Diabetes mellitus

  • Trauma (bone marrow fat)

  • Lipid storage diseases → oval fat bodies from histiocytes (not RTE)

<ul><li><p class=""><span style="color: #ed8b05">Presence of <strong>fat in urine</strong></span></p></li><li><p class="">Confirm with <span style="color: red"><strong>Oil Red O</strong> or <strong>Sudan III</strong> stain</span></p></li></ul><p class=""><span style="color: #f37da4"><strong>Associated with</strong>:</span></p><ul><li><p class=""><span style="color: #08f82c"><strong>Nephrotic syndrome</strong> (glomerular damage)</span></p></li><li><p class=""><span style="color: #08f82c"><strong>Tubular necrosis</strong></span></p></li><li><p class=""><span style="color: #08f82c"><strong>Diabetes mellitus</strong></span></p></li><li><p class=""><span style="color: #08f82c"><strong>Trauma</strong> (bone marrow fat)</span></p></li><li><p class=""><span style="color: #08f82c"><strong>Lipid storage diseases</strong> → oval fat bodies from <strong>histiocytes</strong> (not RTE)</span></p></li></ul><p></p>
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Bacteria in Urine

  • Not normally present

  • Can multiply at room temp >2 hrs, altering results

  • Evaluate microscopy findings alongside nitrite and leukocyte esterase tests

  • Presence suggests UTI (upper or lower)

  • Follow up: Quantitative urine culture if UTI is suspected

<ul><li><p class=""><span style="color: red"><strong>Not normally present</strong></span></p></li><li><p class="">Can<span style="color: red"> <strong>multiply at room temp &gt;2 hrs</strong>,</span> altering results</p></li><li><p class="">Evaluate microscopy findings alongside <span style="color: red"><strong>nitrite</strong> and <strong>leukocyte esterase</strong> tests</span></p></li><li><p class="">Presence suggests <span style="color: red"><strong>UTI</strong> (upper or lower)</span></p></li><li><p class=""><strong>Follow up</strong>: <span style="color: #f88607">Quantitative <strong>urine culture</strong> if UTI is suspected</span></p></li></ul><p></p>
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Yeast in Urine

  • Small, refractile ovals; may show budding or hyphae

  • Common species: Candida albicans

  • Often seen in:

    • Diabetes mellitus (acidic, glucose-rich urine)

    • Immunocompromised patients

    • Vaginal yeast infections

  • May be a contaminant; rapid growth → interpret with caution

  • WBCs should be present if infection is true

  • Differentiation tip: Yeast resists acid/base, RBCs do not

<ul><li><p class=""><span style="color: #0dd6ef"><strong>Small, refractile ovals</strong></span>; may show <strong>budding</strong> or <strong>hyphae</strong></p></li><li><p class="">Common species:<span style="color: #0af0dc"> <strong>Candida albicans</strong></span></p></li><li><p class="">Often seen in:</p><ul><li><p class=""><span style="color: red"><strong>Diabetes mellitus</strong></span> (acidic, glucose-rich urine)</p></li><li><p class=""><span style="color: red"><strong>Immunocompromised patients</strong></span></p></li><li><p class=""><span style="color: #f89eb7"><strong>Vaginal yeast infections</strong></span></p></li></ul></li><li><p class="">May be a <strong>contaminant</strong>; rapid growth → interpret with caution</p></li><li><p class=""><span style="color: red"><strong>WBCs should be present</strong> if infection is true</span></p></li><li><p class=""><strong>Differentiation tip</strong>: <span style="color: #effa09">Yeast <strong>resists acid/base</strong>, RBCs do not</span></p></li></ul><p></p>
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Mucus in Urine

  • Made by RTEs and lower GU tract glands

  • Major protein: Tamm-Horsfall

  • Appears as fine, thread-like strands with low refractive index

  • Seen better with lowered light at 10x

  • More common in females

  • No clinical significance, but reported (1+ to 4+)

  • May affect strip test values and turbidity

<ul><li><p class=""><span style="color: red">Made by <strong>RTEs and lower GU tract glands</strong></span></p></li><li><p class="">Major protein: <span style="color: red"><strong>Tamm-Horsfall</strong></span></p></li><li><p class="">Appears as <span style="color: #ec9898"><strong>fine, thread-like strands</strong> with <strong>low refractive index</strong></span></p></li><li><p class="">Seen better with <span style="color: #92e4b1"><strong>lowered light</strong> at <strong>10x</strong></span></p></li><li><p class=""><span style="color: #fe9a9a">More common in <strong>females</strong></span></p></li><li><p class=""><span style="color: red"><strong>No clinical significance</strong>, but reported (1+ to 4+)</span></p></li><li><p class=""><span style="color: #0df513">May affect <strong>strip test values</strong> and <strong>turbidity</strong></span></p></li></ul><p></p>
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Spermatozoa in Urine

  • Oval head, long tail; ~½ size of an RBC

  • Not motile in urine (toxic environment)

  • Usually not clinically significant, but may cause:

    • False positive protein on strip due to seminal proteins

    • Lab policy variance: some report only with + protein

<ul><li><p class=""><strong>Oval head</strong>, long tail; ~½ size of an RBC</p></li><li><p class=""><span style="color: red"><strong>Not motile</strong> in urine </span>(toxic environment)</p></li><li><p class="">Usually <strong>not clinically significant</strong>, but <span style="color: red">may cause:</span></p><ul><li><p class=""><span style="color: #0cec12"><strong>False positive protein</strong> on strip due to seminal proteins</span></p></li><li><p class=""><span style="color: red"><strong>Lab policy variance</strong></span>:<span style="color: #12f80d"> some report only with + protein</span></p></li></ul></li></ul><p></p>
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When to report Sperm

  • Underage or elderly females → potential legal/clinical significance

  • Causes may include:

    • Specimen mix-up

    • Sexual activity

    • Sexual assault