AP Biology unit 1

Hypothesis

A prediction that can be tested by recording observations or experiments.

Control Group

Groups that hep eliminate experimental errors and biases of researchers.

Experimental Group

The group in an experiment that receives the variable being tested

Independent Variable

The factor that you are changing during the experiment.

Dependent Variable

The factor that is measured during the experiment.

Capillary Action

The attraction of the surface of a liquid to the surface of a solid

Chemical Bonds

An attraction between two atoms resulting from a sharing of outer-shell electrons or the presence of opposite charges on the atoms. The bonded atoms gain complete outer electron shells.

Hydrogen Bonds

Very weak bonds; occurs when a hydrogen atom in one molecule is attracted to the electrostatic atom in another molecule.

Covalent Bonds

Bonds created by sharing electrons with other atoms.

Ionic Bonds

Formed when one or more electrons are transferred from one atom to another.

Cohesion

Attraction between molecules of the same substance.

Adhesion

An attraction between molecules of different substances.

Solute

A substance that is dissolved in a solution.

Solution

A homogeneous mixture of two or more substances

Solvent

A liquid substance capable of dissolving other substances.

Molecule

A group of atoms bonded together.

Functional Groups

The components of organic molecules that are most commonly involved in chemical reactions

Organic Compounds

Compounds that contain carbon

Hydrocarbons

Compounds composed of only carbon and hydrogen

ATP

(adenosine triphosphate) main energy source that cells use for most of their work

Macromolecule

A very large organic molecule composed of many smaller molecules

Dehydration Reaction

A chemical reaction in which molecules combine by removing water

Hydrolysis

Breaking down complex molecules by the chemical addition of water

Polymers

large compound formed from combinations of many monomers

Monomers

small unit that can join together with other small units to form polymers

Diasaccharides

A sugar molecule consisting of two monosaccharides linked by dehydration synthesis. Maltose, Lactose, Sucrose and Fructose.

Monosaccharides

Single sugar molecules.
glucose, fructose, galactose

Polysaccharides

Carbohydrates that are made up of more than two monosaccharides

Amino Acids

a simple organic compound containing both a carboxyl (—COOH) and an amino (—NH2) group.

Polypeptide

A polymer (chain) of many amino acids linked together by peptide bonds.

Cellulose

polysaccharide consisting of glucose monomers that reinforces plant-cell walls

Glycogen

Storage form of glucose

Hydrophobic

Non Polar molecules that repel water.

Hydrophilic

molecules that are attracted to water.

Glycocidic Linkage

A covalent bond formed between two monosaccharides by a dehydration reaction.

Starch

A storage polysaccharide in plants consisting entirely of glucose.

Primary Structure

The first level of protein structure; the specific sequence of amino acids making up a polypeptide chain.

Secondary Structure

The second level of protein structure; the regular local patterns of coils or folds of a polypeptide chain.

Tertiary Structure

The third level of protein structure; the overall, three-dimensional shape of a polypeptide due to interactions of the R groups of the amino acids making up the chain.

Quaternary Structure

The fourth level of protein structure; the shape resulting from the association of two or more polypeptide subunits.

Lipid

Class of molecules that do not include true polymers.

Fat

A large lipid molecule made from an alcohol called glycerol and three fatty acids; a triglyceride. Most fats function as energy-storage molecules.

Fatty acid

Building Blocks of Lipids

Amino Acid

compound with an amino group on one end and a carboxyl group on the other end. Building block of protein.

Phospholipid

a lipid that contains phosphorus and that is a structural component in cell membranes

Denature

A change in the shape of a protein (such as an enzyme) that can be caused by changes in temperature or pH (among other things).

Protein

An organic compound that is made of one or more chains of amino acids and that is a principal component of all cells

Steroid

lipid molecule with four fused carbon rings

What is the relationship between monomers and polymers?

Monomers build polymers
Polymers are composed of monomers

dehydration synthesis

This is when water is removed between two monomers to JOIN them together

Hydrolysis

The breaking of a bond using water

Why is Carbon important?

Found in ALL organic compounds, is a versatile element since it can make 4 bonds
Can create carbon chain or carbon ring structures

What are the main elements found in organic compounds?

C, H, O, N, P, (S)

Carbohydrates include what?

Sugars and polymers of sugars

What is the basic structural formula for a carbohydrate?

Basic structural formula = (CH2O)N
Example: Glucose = C6H12O6 = (CH2O)6

How are carbohydrates made?

Made by monosaccharides joined through glycosidic linkage (creates polysaccharides)

Examples of carbohydrates include

sugars and starches

The names of many carbohydrates tend to end in

-ose

What is the monomer of carbohydrates?

Monosaccharide (Glucose, fructose, galactose)

What is the function of a carbohydrate?

Short Term Energy Source
Plants use starch as an energy-storage polysaccharide
Animals use glycogen as an energy-storage polysaccharide
. Structural Support
Plants have cellulose as a major component of their cell walls
Arthropods have chitin in their exoskeletons and fungi have this in their cell walls.

Lipids are primarily made from

Carbon and hydrogen (hydrocarbons)

Type of fat with no double bonds between carbons, tends to be solids at room temp. and is produced by animals

Saturated fat

Type of fat with some double bonds between carbon. Creates a kink in the fatty acid chain. Tends to be liquid at room temp. and is produced by plants

Unsaturated Fat

What atoms are found in lipids?

C, H, O

Is there a monomer for Lipids?

technically no

If there was a monomer for lipids what we it be considered as?

Fatty acid chains and glycerol are considered to be the building blocks for lipids

What are the functions of lipids?

1. Long-term Energy Storage
Stores twice as many calories per gram as carbohydrates
2. Protection and Insulation
Protects vital organs
Keeps animals warm
3. Chemical Messengers
Many hormones are lipids
Steroids are made of 4 fused carbon rings
4. Cell Membrane Structure
Phospholipids are a major component of cell membranes.

What is the monomer of Proteins

Amino acids

The primary structure of a protein

Unique sequence in which amino acids are joined together through peptide bonds (chain of amino acids)

The secondary structure of a protein

Due to TWO different 3-dimensional shapes that result from hydrogen bonding

α-helix - coiled shape
β-pleated sheet - accordion shape

The tertiary structure of a protein

Results in a globular structure due to interactions between R-groups
hydrophobic interactions
hydrogen bonds
van der Waals forces

The Quaternary structure of a protein

Not all proteins have this structure!
The association of 2 or more polypeptide chains into one large protein.
Each chain has it's own primary, secondary, and tertiary structure

How can a protein be denatured?

Proteins can be denatured (loss of shape) due to changes in pH, temperature, or extreme salt concentration (salinity).
Causes protein to lose its ability to function!

Carries genetic information that codes for the sequence of amino acids in proteins.
Two major types include DNA and RNA.
ATP is also a nucleic acid used for energy transfer in cells.

Nucleic acids

Contains CHONP and it's monomer is a nucleotide which contains three parts

Nucleic acids

The three parts of a nucleotide include

Three phosphate groups, a pentose sugar, and a nitrogenous base

The function of a nucleic acid is to

Function
Store and transmit genetic information!

The difference between DNA and RNA is

The sugar; DNA is a deoxyribose sugar, RNA is a Ribose sugar

Phosphate group

R-PO4

double helix

The form of native DNA, referring to its two adjacent polynucleotide strands wound into a spiral shape

RNA

A type of nucleic acid consisting of nucleotide monomers with a ribose sugar and the nitrogenous bases adenine (A), cytosine (C), guanine (G), and uracil (U); usually single-stranded; functions in protein synthesis and as the genome of some viruses

DNA

A double-stranded, helical nucleic acid molecule capable of replicating and determining the inherited structure of a cell's proteins

starch

A storage polysaccharide in plants consisting entirely of glucose

glycogen

An extensively branched glucose storage polysaccharide found in the liver and muscle of animals; the animal equivalent of starch

nucleotide

The building block of a nucleic acid, consisting of a five-carbon sugar covalently bonded to a nitrogenous bas and a phosphate group

monosaccharide

The simplest carbohydrate, active alone or serving as a monomer for disaccharides and polysaccharides. Also known as simple sugars, the molecular formulas of monosaccharides are generally some multiple of CH20

fatty acid

a long carbon chain carboxylic acid. fatty acids vary in length and in the number and location of double bonds; three fatty acids linked to a glycerol molecule form fat

steroid

a type of lipid that consists of four carbon rings to which various functional groups are attached

cholesterol

A steroid that forms an essential component of animal cell membranes and acts as a precursor molecule for the synthesis of other biologically important steroids

polysaccharide

A polymer of up to over a thousand monosaccharides, formed by condensation reactions

carbohydrate

A sugar (monosaccharide) or one of its dimers (disaccharides) or polymers (polysaccharides).

triacylglycerol

Three fatty acids linked to one glycerol molecule

nucleic acid

A polymer (polynucleotide) consisting of many nucleotide monomers; serves as a blueprint for proteins and, through the actions of proteins, for all cellular activities. The two types are DNA and RNA

gene

A discrete unit of hereditary information consisting of a specific nucleotide sequence in DNA (or RNA, in some viruses)

disaccharide

A double sugar, consisting of two monosaccharides joined by dehydration synthesis

lipid

One of a family of compounds, including fats, phospholipids, and steroids, that are insoluble in water

alpha helix

A spiral shape constituting one form of the secondary structure of proteins, arising from a specific hydrogen-bonding structure

pyrimidine

one of two types of nitrogenous bases found in nucleotides, characterized by a six-membered ring. Cytosine (C), thymine (T), and uracil (U)

ribose

The sugar component of RNA

cellulose

A structural polysaccharide of cell walls, consisting of glucose monomers joined by b-1, 4-glycosidic linkages