Biology - Chapter 6 DNA: Hereditary Molecules of Life

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103 Terms

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what is the primary carrier of genetic information in all living organisms?

DNA

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DNA contains the instructions to manufacture all of the ______ necessary to build and maintain a living organism

proteins

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DNA is passed from generation to generation in the form of _________

chromosomes

in eukaryotic organisms these chromosomes are visible during mitosis only

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the _____ and ________ of chromosomes in a cell are specific to a particular species

size, number

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nucleoid

a single looped chromosome in prokaryotes

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plasmid

a ring of genetic material in bacteria

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which organism has the most discovered chromosomes

the adder’s tongue fern has 1200 chromosomes

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describe the series of events that occurs when a specific protein is required by a cell

  1. the gene (the portion of DNA that codes for this protein) is activated

  2. the sequence is copied into a molecule of RNA

  3. this RNA molecule moves into the cytosol (makes sense that the DNA makes copies of the sequence in RNA so that the DNA itself doesn’t get damaged)

  4. the sequence carried by the RNA is translated by ribosomes into chains of amino acids

  5. polypeptides are then further modified to form functional proteins

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Gregor Mendel

statistically analyzed the inherited characteristics of over 28,000 pea plants over a 7-year period

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what conclusions did Gregor Mendel come to after his experiment?

  • ‘factors’ for a given trait were passed from parent to offspring

    • these ‘factors’ that determine traits such as size, markings, etc are derived from genes

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genes

coding regions of DNA that contain the instructions to build proteins that are responsible for that particular inherited trait

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within a species, the gene for a particular trait is always found in ___ ____ ________ on a particular chromosome

the same location

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how do eukaryotic cells fit an enormous amount of information into every chromosome?

by wrapping the DNA stored in chromosomes in the nucleus around special proteins called histones. this arrangement both protects the DNA and reduces volume, allowing it to fit into the nuclei

14
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in what state is genetic material found in eubacteria?

it is usually found in loops (meaning that bacterial DNA is joined end to end to form one large ring)

(however, smaller accessory loops of DNA may also occur)

15
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where is bacterial DNA found?

nucleoid

16
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_______ often only carry a few genes

plasmids

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Can plasmids be copied from one bacterium to another?

yes

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____________ have circular chromosomes

archaebacteria

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archaebacteria DNA is associated with ___________ ________

histone-like proteins

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what contains small amounts of DNA in eukaryotes (similar to prokaryotes)

mitochondria and chloroplast

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what is a genome

the complete set of an organism’s hereditary information

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how is the genome of eukaryotes arranged?

it is spread out over many chromosomes, which often occur as homologous pairs

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humans have __ homologous pairs in each cell

23

24
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how many base pairs do humans have?

approx 3 billion base pairs

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most eukaryotes are _______, but there are exceptions

diploids

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diploid meaning

2 sets of chromosomes

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what did the human genome project hope to achieve?

to map the human genome blueprint

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when did the human genome project begin?

1990

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when did the human genome project end?

2003

30
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what is a DNA nucleotide composed of?

phosphate group, deoxyribose sugar, and a nitrogenous base

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what bond holds together the phosphate group and the deoxyribose sugar in DNA?

ester bond

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what bond holds together the nitrogenous base and the deoxyribose sugar in DNA?

glycosidic bond

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how to tell pyrimidines and purines apart?

pyrimidines - 1 ring in the nitrogenous base
purines - 2 rings in the nitrogenous base

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which nitrogenous bases are pyrimidines?

cytosine and thymine

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which nitrogenous bases are purines?

adenine and guanine

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which bond holds the nitrogenous bases together?

hydrogen bond

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what is the distance between each base pair in DNA?

3.4 nm

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how many base pairs in 1 turn of DNA?

10 base pairs

39
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what bonds are in the sugar phosphate backbone?

phosphodiester bonds

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which direction does the sugar-phosphate backbone go?

the 5’ to 3’ direction

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at one end of the sugar-phosphate backbone, the free phosphate will not be attached to ________ _________ (5’ end)

another nucleotide

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at one end of the sugar-phosphate backbone, the free OH will not be attached to _ _________ (3’ end)

a phosphate

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why is the sugar-phosphate backbone arranged anti-parallel?

so the bases can meet up with each other

44
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where is the nitrogenous base attached to on the deoxyribose sugar?

1’ carbon

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where is the phosphate group attached to on the deoxyribose sugar?

5’ carbon on one sugar, and the 3’ carbon of another sugar

46
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when did Watson and Crick establish the structure of DNA

1953

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what was Watson and Crick’s suspicion?

that the specific base pairings in the double helix existed to allow a controlled system of DNA replication

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when was the relationship between DNA structure and replication fully understood?

1958 by a classic experiment by Meselson and Stahl

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what are the 3 theories on how DNA replicates?

  1. DNA replicated semi-conservatively

  2. DNA replicated conservatively

  3. DNA replicated dispersively

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What is conservative replication?

a DNA molecule would get copied and make a second DNA molecule

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what is dispersive replication?

a DNA molecule would get cut at certain parts, each of which would get copied and reattached to form 2 DNA molecules

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what is semi-conservative replication?

2 DNA strands would separate and each one would serve as a template to copy a second strand, thus producing 2 DNA molecules.

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how did Meselson and Stahl prove that DNA replicates using semi-conservative replication?

  • used E. coli bacteria (since it could be easily grown in a lab)

  • grew the cells in the presence of a specific type of nitrogen, which is naturally found in DNA that would make all of the DNA very heavy

  • they used centrifugation, which can separate things according to their weight

  • initially all of the DNA in the cells was heavy, and was at the bottom of the tube since it was grown in heavy nitrogen

  • then they started growing these cells in the presence of light nitrogen, so all of the DNA made in subsequent cell divisions would be lighter

  • after one cell division, the DNA was half as heavy, so half of the molecule contained heavy nitrogen, and the other half didn’t

    • not in line with the conservative DNA replication model, which would predict that one molecule would be all light and the other all heavy

  • after two cell divisions, the DNA molecule was now either half heavy and half light, or fully light

    • not in line with the dispersive DNA replication model, which would predict that the DNA after two cell divisions would contain a mixture of heavy and light DNA

  • agrees with the semi conservative model: every cell gets one new DNA strand and one old one

54
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heating DNA causes

the DNA strands to separate

55
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histones

positively charged proteins, and the negatively charged DNA strands are wrapped around them

56
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nucleosomes

a unit of DNA storage, consisting of 8 histones with DNA strands wrapped around them; the DNA around each nucleosome is about 147 nucleotides long

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solenoids

a group of 6 nucleosomes

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prokaryotes do not have chromosomes contained in a nucleus; what do they have instead?

prokaryotic DNA is one chromosome long that may be circular

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step 1 of bacterial conjugation

a donor bacterial cell joins with a recipient cell

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step 2 of bacterial conjugation

one strand of the plasmid breaks and begins to move through the bridge from donor to recipient

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step 3 of bacterial conjugation

DNA replication of the plasmid is continuous in the donor and discontinuous in the recipient

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step 4 of bacterial conjugation

when complete, replication has produced a copy of the plasmid in both the donor and recipient cells

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what is supercoiling?

the continuous twisting of prokaryotic DNA that reduces the volume of the DNA

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what causes DNA to continually shorten during every cycle of repetition

the DNA at the very end of the chromosome cannot be fully copied in each round of replication, resulting in a slow gradual shortening of the chromosome

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telomeres

a repeating sequence of DNA at the end of a chromosome that protects coding regions from being lost during replication

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4 functions of telomeres

  1. help to prevent chromosome ends from fusing to other chromosomes

  2. prevent DNA degradation from enzymes called nucleases

  3. assist DNA repair mechanisms in distinguishing DNA breaks from chromosomal ends

  4. play a role in determining the number of times that a cell can divide, and therefore may play a critical role in determining the lifespan of an organism

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cell senescence

the period in a cell’s lifespan when it loses the ability to divide and grow

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what is cell senescence also known as

cell aging

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hayflick limit

the total number of times a cell can divide

70
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explain why germ cells are unique

  • Germ cells are unique because they must be able to continue replicating. They must maintain their genetic integrity from parent to offspring, generation after generation. These cells could not tolerate the loss of genetic material, even telomeres that would eventually run out and leave coding DNA at risk. In these germ line cells, an enzyme called telomerase adds more DNA to the shortening telomeres, continually restoring their length. 

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Why are cancer cells dangerous?

because they never stop dividing

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what do healthy cells do with their telomeres that cancer cells don’t do

they use up the telomeres in their DNA over time and begin cell senescence, but cancer cells never do

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why do cancer cells not use up the telomeres in their DNA and not begin cell senescence?

because they produce the enzyme telomerase in great quantities

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what does telomerase do?

it replaces the telomeres that are lost during cell division

75
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which scientist cross pollinated pea plants?

Mendel

76
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why did Mendel cross pollinate pea plants?

he cross pollinated pea plants based on their characteristics to prove how certain traits are inherited

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what conclusion did Mendel draw from his experiment?

a dominant trait was always displayed in the offspring. a recessive trait was only displayed in the absence of a dominant trait

78
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what is the law of segregation?

offspring inherit one hereditary factor from each parent

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what is the law of independent assortment?

different traits have an equal opportunity of occuring together

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what is the law of dominance

offspring will inherit the dominant trait, can only inherit the recessive trait if they have both recessive factors

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what conclusion did Griffith draw from his experiment?

bacteria can take in genetic material from nearby bacteria and use this DNA as its own

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what did Levene discover from his experiments?

he discovered 2-deoxyribose, how the nucleic acid components combine to form nucleotides and how the nucleotides combine to form in chains, discovered that DNA was made up of nucleotides, and that nucleotides were made up of a 5-carbon sugar, a phosphate group, and a nitrogenous base.

he also managed to isolate nucleotides, as well as the five-carbon sugar D-Ribose from the RNA molecule

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who identified purines and pyrimidines via their ultraviolet absorption spectra?

Chargaff

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how did Miescher conduct his experiments?

he collected bandages of puss from patients, extracted it on phosphorus, named the substance that came out nucein (because he found it in the nucleus of white blood cells)

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what was Miescher’s conclusion from his experiment?

he hypothesized that nucein was linked to the function of the organelle, and may have a role in the transmission of hereditary traits, but he ended up rejecting that idea

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how did Griffith conduct his experiment?

S-strain bacteria were very pathogenic (virulent)

When Griffith injected the mice with the R-strain bacteria, the mice survived and showed no signs of pneumonia

Griffith concluded that the S-strain was responsible for pneumonia.

Griffith then heated the S-strain to destroy the bacteria, and the mice were no longer infected.

He then mixed the heat-killed S-strain with the R-strain, but the mouse still got pneumonia and died.

Griffith isolated living S-strain bacteria from the dead mouse

The R-strain bacteria had some acquired factor from the heat-killed S-strain that made newR-strain bacteria into virulent colonies

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what was Chargaff’s hypothesis?

if DNA from different species exhibited different biological activities, there should also be chemically demonstrable differences between the DNA

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describe Chargaff’s procedure:

  1. separation of the DNA mixture into individual components by paper chromatography

  2. the separated compounds were converted into mercury salts

  3. the purines and pyrimidines were identified via their ultraviolet absorption spectra

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describe Hammerling’s first experiment

  • he removed the cap, the foot, or the stalk of each of the structures to see if it would regenerate or not

  • he found that when the stalk or cap was cut off it would regenerate, when he cut off the foot it wouldn’t

  • from this discovery he concluded that hereditary information was located in the nucleus of the cell

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describe Hammerling’s second experiment

  • he used 2 different acetabularia cells that had different cap morphologies called A. crenulata and A. mediterranea

  • he cut off the caps of the 2 cells and grafted the stalks onto the different algae cells

  • over time the cell with the A. crenulata cap and the A. mediterranea stalk and foot devoled a cap with the A. mediterranea morphology and vice versa with the other cell

  • from this experiment Hammerling determined that the nucleus was the location of genetic material that determines the cell’s properties

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what are Avery, Macleod, and McCarty best known for?

they discovered that DNA is a material of which genes and chromosomes are made.

they grew different types of streptococcus bacteria in culture tubes that contained a growth medium. they kept the different strains isolated from each other. Streptococcus has S-strains and R-strains which differ in their disease causing ability, and the goal of this experiment was to determine which part of the S-strain bacteria cell was responsible for making the R-strain bacteria virulent. The possible transforming substances were DNA, RNA, and proteins

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what did Wilkins and Franklin discover?

the double helix structure of DNA

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what did Wilkins do that helped reveal the structure of DNA?

he was involved in X-Ray diffraction studies of DNA, which ultimately revealed the helical structure of the molecule

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what is photo 51 and why is it significant?

photo 51 shows the clear X-Ray diffraction pattern of DNA, which was crucial in revealing its double helix structure

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what did Watson and Crick discover?

they discovered the model and structure of DNA, and combined the ideas of several scientists and consolidated their findings to fully showcase the model of DNA. Using the information provided by Chargaff, Franklin, and Wilkins, they found that the double helix could incorporate all of their finds (4 nitrogenous bases, ratios between each other, phosphate sugar backbone)

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What did Watson and Crick’s model show?

  • the DNA molecule can only be stable if the strands run anti-parallel.

  • The DNA strands must have the OH of the 3’ carbon attached to the deoxyribose sugar at one end and the phosphate attached to the 5’ carbon at the last sugar at the other end

  • their model also showed that that the bases are joined by hydrogen bonds, keeping the 2 strands together

  • A—T are joined by 2 hydrogen bonds, and C—G are joined by 3 hydrogen bonds

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how did Hershey and Chase do the first part of the experiment?

  • took 2 samples of E. coli

  • infected sample 1 with sulphur labeled bacteriophages

  • infected sample 2 with phosphorus labeled bacteriophages

  • stirred each sample in a Waring Blender

  • the spinning force removes the bacteriophage particles that are on the membrane of the bacteria, but would preserve the bacteriophage material that entered the cell

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what are the results from experiment 1?

  • in sample 1, the blender removed 80% of the marked material

  • in sample 2, the blender removed 40% of the marked material

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what are is the conclusion from experiment 1?

  • the protein remained on the outside of the bacteria

  • since it does not enter the cell, it cannot be the genetic material

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why did Hershey and Chase do a second experiment?

because the first experiment only remove 80% of the protein. they wanted to prove that the other 20% does not enter the bacteria, so they did another experiment