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Aerobic
Involves oxygen; a metabolic process requiring oxygen to generate ATP.
Anaerobic
Occurs without oxygen; organisms or cells that utilize pathways like fermentation for energy.
Cellular respiration
The biochemical process by which cells extract energy from organic molecules, typically glucose, through multiple enzymatic reactions.
Glycolysis
The first stage of cellular respiration, breaking down glucose into pyruvate while producing a small amount of ATP and NADH.
Phosphorylation
The addition of a phosphate group to a molecule, crucial for ATP synthesis.
Oxidation
The loss of electrons from a molecule, often releasing energy.
Reduction
The gain of electrons by a molecule.
Catabolic
Processes that break down molecules to release energy (e.g., cellular respiration).
Anabolic
Processes that build complex molecules from simpler ones, usually requiring energy (e.g., photosynthesis).
Metabolic water
Water produced as a byproduct of metabolic reactions, including the electron transport chain in cellular respiration.
Cell metabolism
The sum of all biochemical reactions in a cell, including both anabolic and catabolic pathways.
Glycolysis Input
Glucose
Glycolysis Output
Pyruvate, ATP, NADH
Pyruvate Oxidation Input
Pyruvate
Pyruvate Oxidation Output
Acetyl-CoA, CO₂, NADH
Citric Acid Cycle Input
Acetyl-CoA
Citric Acid Cycle Output
CO₂, ATP, NADH, FADH₂
Electron Transport Chain Input
NADH, FADH₂, O₂
Electron Transport Chain Output
ATP, H₂O
Cellular respiration equation
C6H12O6 + 6O2 -> 6CO2 + 6H2O + 36 or 38 ATP
ATP Cycle
ATP is used for energy-requiring processes and regenerated through phosphorylation.
NADPH Cycle
Involved primarily in anabolic reactions like photosynthesis; different from NADH in cellular respiration.
Substrate-level phosphorylation
Direct transfer of phosphate to ADP (occurs in glycolysis and Krebs cycle).
Oxidative phosphorylation
ATP synthesis using energy from the electron transport chain.
Gas Exchange
The process of moving oxygen into cells and removing carbon dioxide.
Bulk Flow
The movement of fluids or gases driven by pressure differences (e.g., blood circulation or air movement).
Ventilation
The movement of air into and out of the lungs.
Circulation
The transport of fluids (blood, lymph) through an organism.
Pressure
The force exerted by a fluid or gas.
Partial Pressure
The pressure exerted by a single gas within a mixture.
Resistance
The opposition to flow in ventilation or circulation (e.g., airway constriction reduces airflow).
Oxygen Requirement in Eukaryotes
Oxygen is an electron acceptor.
Bulk Transport Mechanisms
Large organisms, including mammals, birds, and reptiles, use bulk transport via circulatory systems to move oxygen efficiently.
Insect Oxygen Movement
Insects use tracheal systems for bulk oxygen movement.
Aquatic Oxygen Transport
Aquatic organisms, like fish, use gills and circulatory transport.
Partial Pressure Calculation
Px=(fraction of gas)×(total atmospheric pressure).
Net Diffusion of Gas
Follows concentration gradient high pp to low pp.
Diffusion vs. Bulk Flow
Diffusion moves gases passively, dependent on concentration gradients; Bulk flow moves gases actively, driven by pressure changes (e.g., breathing).
Factors Increasing Bulk Flow
Increase: Higher pressure, larger diameter pathways, lower resistance.
Factors Decreasing Bulk Flow
Decrease: Narrower pathways, higher viscosity, increased resistance.
Diffusion Pros
Simple, energy-efficient.
Diffusion Cons
Slow over long distances.
Bulk Transport Pros
Fast, efficient.
Bulk Transport Cons
Requires energy, complex systems.
Inhalation
The intake of air into the lungs or respiratory system.
Exhalation
The expulsion of air from the lungs or respiratory system.
Countercurrent Exchange
A mechanism in which fluids flow in opposite directions to maximize gas exchange efficiency (e.g., fish gills).
Tidal Ventilation
Air moves in and out of the lungs in the same pathway (common in mammals).
Crosscurrent Exchange
Air flows perpendicular to blood flow to increase oxygen absorption (seen in bird lungs).
Fish Gills
Highly vascularized structures allowing gas exchange via countercurrent flow.
Insect Tracheal System
A network of tubes directly delivering oxygen to cells through spiracles.
Amphibian Respiratory System
Uses lungs, skin, and sometimes the buccal cavity for respiration.
Bird Lungs
Rigid lungs with air sacs and a unidirectional airflow mechanism.
Mammalian Lungs
Spongy lungs relying on tidal ventilation for gas exchange.
Fish Ventilation and Gas Exchange
Water enters through the mouth and flows over the gills; Oxygen diffuses into the blood while carbon dioxide is expelled; Countercurrent exchange ensures maximum oxygen uptake.
Air Respiration
The process of breathing air to obtain oxygen.
Water Respiration
The process of extracting oxygen from water.
Oxygen Content
The amount of oxygen present in a given volume of air or water.
Energy Requirement
The amount of energy needed for an organism's metabolic processes.
Efficiency
The effectiveness of a respiratory system in extracting oxygen.
Ventilation in the insect respiratory system
Air enters spiracles, flowing through tracheal tubes. Muscle contractions help move gases internally. Diffusion at the cellular level enables gas exchange.
Mammalian lung ventilation
Air moves in and out the same path (tidal ventilation).
Bird lung ventilation
Air moves through a one-way system using air sacs to maintain a continuous flow.
Respiratory volume calculation
Respiratory volume = Tidal Volume × Breaths.
Gas exchange in fish
Uses countercurrent exchange for oxygen uptake.
Gas exchange in birds
Uses crosscurrent exchange for oxygen uptake.
Gas exchange in mammals
Uses tidal ventilation for oxygen uptake.
Hematocrit
The proportion of blood volume occupied by red blood cells, often used as an indicator of oxygen-carrying capacity.
Solubility
The ability of a gas (like oxygen or carbon dioxide) to dissolve in a liquid (blood plasma).
Oxygenated blood
Blood that contains oxygen, typically transported by arteries.
Deoxygenated blood
Blood that has released oxygen and carries carbon dioxide, usually found in veins.
Tetramer
A protein structure composed of four subunits (e.g., hemoglobin has four subunits).
Monomer
A single molecular unit (e.g., myoglobin is a monomeric oxygen-binding protein).
Cooperative Binding
A mechanism where oxygen binding to one hemoglobin subunit increases the affinity of other subunits for oxygen.
Reversible Binding
Oxygen can bind to and detach from hemoglobin depending on environmental conditions (e.g., oxygen levels in tissues and lungs).
Oxygen Diffusion
Oxygen moves from alveoli (high oxygen pressure) into pulmonary capillaries (low oxygen pressure).
Carbon Dioxide Removal
Carbon dioxide diffuses from capillaries into alveoli, where it is exhaled.
Plasma
Contains water, nutrients, hormones, and dissolved gases.
Red Blood Cells (Erythrocytes)
Transport oxygen via hemoglobin.
White Blood Cells & Platelets
Immune defense and clotting function.
Importance of cooperative binding
Ensures efficient oxygen uptake in the lungs and facilitates oxygen release in tissues where it is needed.
Hemoglobin family of molecules
Certain bacteria contain hemoglobin-like proteins for oxygen binding; some invertebrates use hemocyanin; vertebrates use hemoglobin.
Structural anatomy of hemoglobin
Tetrameric Protein with four subunits, each binding one oxygen molecule. Can carry up to four oxygen molecules per hemoglobin.
Importance of reversible binding
Allows oxygen pickup in lungs and oxygen release in tissues; carbon dioxide binding competes with oxygen transport in red blood cells.
O2 loading (binding)
High oxygen pressure in the lungs causes hemoglobin to bind oxygen.
O2 unloading (release)
Low oxygen pressure in the tissues leads to the release of oxygen from hemoglobin.
Myoglobin
A protein with higher oxygen affinity than hemoglobin, storing oxygen in muscle tissues.
Transport of CO2
CO₂ dissolves in plasma, with the majority converted to bicarbonate (HCO₃⁻) via carbonic anhydrase.
Carbonic anhydrase
An enzyme that catalyzes the conversion of CO₂ to bicarbonate in the bicarbonate buffering system.
Hemolymph
The circulatory fluid found in organisms with open circulatory systems, serving as a combined transport system for nutrients and waste.
Blood
The specialized circulatory fluid in closed systems, consisting of plasma, red and white blood cells, and platelets.
Vasodilation
The widening of blood vessels, increasing blood flow and reducing blood pressure.
Vasoconstriction
The narrowing of blood vessels, decreasing blood flow and increasing blood pressure.
Filtration
The process by which plasma passes from capillaries into the interstitial fluid due to pressure differences.
Reabsorption
The movement of fluids back into the blood, helping maintain homeostasis.
Open circulatory system structure
Hemolymph is pumped by the heart into open spaces (hemocoel), where it directly bathes organs.
Open circulatory system lineages
Found in arthropods (insects, crustaceans) and many mollusks.
Advantages of open circulatory system
Requires less energy and has a simple system design.
Disadvantages of open circulatory system
Less efficient oxygen delivery and slow circulation.
Closed circulatory system structure
Blood is confined within vessels and transported by a heart through a network of arteries, veins, and capillaries.