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Vocabulary flashcards covering the core terms and definitions from the lecture on DNA structure, replication, repair, and chromatin organization.
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Deoxyribonucleic Acid (DNA)
Hereditary molecule composed of nucleotides that stores and transmits genetic information.
Double Helix
The two-stranded, spiral structure of DNA discovered by Watson and Crick in 1953.
James Watson & Francis Crick
Scientists who proposed the correct double-helical model of DNA structure.
Transformation
Uptake of foreign DNA by a cell, causing a change in genotype and phenotype (first observed by Griffith).
Frederick Griffith
Researcher who discovered bacterial transformation in 1928 using pathogenic and harmless Streptococcus strains.
Bacteriophage (Phage)
Virus that infects bacteria; instrumental in showing DNA is genetic material.
Hershey–Chase Experiment
1952 study proving DNA, not protein, enters E. coli during phage infection and carries genetic information.
Erwin Chargaff
Scientist who showed DNA composition varies among species and that A=T and G=C (Chargaff’s rules).
Chargaff’s Rules
In any species, amounts of adenine equal thymine and guanine equals cytosine; base composition differs between species.
X-ray Crystallography
Technique used by Rosalind Franklin and Maurice Wilkins to photograph DNA and reveal its helical structure.
Rosalind Franklin
Scientist whose X-ray diffraction images provided key evidence for the DNA double helix.
Antiparallel
Orientation of DNA strands running in opposite 5′→3′ directions in the double helix.
Purine
Two-ring nitrogenous base (adenine or guanine).
Pyrimidine
Single-ring nitrogenous base (cytosine or thymine in DNA, uracil in RNA).
Complementary Base Pairing
Specific hydrogen-bonding of A with T and G with C in DNA.
Semiconservative Replication
Replication model in which each daughter DNA molecule contains one parental strand and one new strand.
Conservative Model
Disproved replication model proposing parental strands rejoin after serving as templates.
Dispersive Model
Disproved replication model proposing each strand is a mix of old and new DNA segments.
Meselson–Stahl Experiment
1958 study using heavy- and light-nitrogen isotopes to confirm semiconservative replication.
Origin of Replication
Specific DNA sequence where replication begins, forming a replication bubble.
Replication Fork
Y-shaped region at each end of a replication bubble where new strands are synthesized.
Helicase
Enzyme that unwinds the DNA double helix at replication forks.
Single-Strand Binding Protein
Protein that stabilizes separated DNA strands during replication.
Topoisomerase
Enzyme that relieves overwinding strain ahead of replication forks by cutting and rejoining DNA.
Primase
RNA polymerase that synthesizes short RNA primers needed to start DNA synthesis.
RNA Primer
Short stretch of RNA providing a free 3′-OH for DNA polymerase to begin DNA synthesis.
DNA Polymerase III (bacteria)
Main enzyme that adds nucleotides to a growing DNA strand during replication.
DNA Polymerase I (bacteria)
Enzyme that removes RNA primers and replaces them with DNA nucleotides.
Leading Strand
DNA strand synthesized continuously toward the replication fork in a 5′→3′ direction.
Lagging Strand
DNA strand synthesized discontinuously away from the fork as Okazaki fragments.
Okazaki Fragment
Short DNA segment produced on the lagging strand and later joined together.
DNA Ligase
Enzyme that seals nicks by forming phosphodiester bonds; joins Okazaki fragments.
Sliding Clamp
Protein ring that holds DNA polymerase to the DNA template for efficient replication.
dATP (deoxyadenosine triphosphate)
Nucleoside triphosphate that donates adenine during DNA synthesis, releasing pyrophosphate.
Pyrophosphate
Two linked phosphate groups released when a nucleotide is added to DNA, driving polymerization energetically.
Proofreading
Activity of DNA polymerase that removes and replaces mispaired nucleotides during replication.
Mismatch Repair
Post-replication process where enzymes fix incorrectly paired bases missed by proofreading.
Nucleotide Excision Repair
Repair mechanism where a nuclease cuts out damaged DNA, DNA polymerase fills in, and ligase seals.
Mutation
Permanent DNA sequence change; source of genetic variation and raw material for evolution.
Telomere
Repetitive nucleotide sequence at chromosome ends that protects genes from erosion during replication.
Telomerase
Enzyme that extends telomeres in germ cells, using an RNA template within the enzyme.
Chromatin
Complex of DNA and proteins (mainly histones) that packages eukaryotic chromosomes.
Histone
Basic protein around which DNA wraps, forming nucleosomes; subject to chemical modification.
Nucleosome
‘Bead-on-a-string’ unit of chromatin: DNA wrapped around an octamer of histone proteins.
Euchromatin
Loosely packed chromatin that is transcriptionally active during interphase.
Heterochromatin
Highly condensed chromatin (e.g., centromeres, telomeres) generally transcriptionally inactive.
Supercoiling
Compacting of bacterial circular DNA into a dense nucleoid structure through twisting.
Nucleoid
Region in a bacterial cell containing the supercoiled chromosome; not membrane-bound.
Replication Bubble
Open region of DNA where replication occurs, formed around an origin of replication.
DNA Replication Machine
Large multi-protein complex that coordinates enzymatic activities during DNA replication.
Mutation Source
Spontaneous errors or DNA damage from physical/chemical agents such as X-rays or cigarette smoke.