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Polarized Light Microscopy and Fluorescence
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What does the objective lens say in PLM?
Pol, P, PO, SF
What is different about the PLM?
Analyzer below the head with vibrational direction up/down
Polarizer bottom of condenser with vibrational direction east/west
Rotating stage
What is polarized light?
Light with the same vibrational direction
What happens to light when it hits the filter?
The light splits into a fat ray and the slow ray because 2 refractive indices. One ray across the width and one across the length.
Retardation Value
Distance between the slow ray and fast ray.
What are the colors caused by in PLM?
They are called Interference colors and caused by interference between fast and slow ray, different color because of thickness.
Anisotropic
More than one refractive index
Isotropic
One refractive index, can’t be seen with PLM
Extinction
Fiber turns black when aligned with polarized light, cotton doesn’t undergo extinction
Delusterant
Dark fine flecks in fiber, decrease shine
Sign of Elongation
Tells you whether the fast or slow ray is aligned with the slow ray, Negative or Positive
Positive Sign of Elongation
More intense, fast ray of fiber aligned with slow ray of retardation plate, decrease in retardation
Negative Sign of Elongation
Less intense, slow ray of fiber is aligned with slow ray of retardation plate, greater retardation
Retardation Plate must Include:
Retardation value and direction of slow ray
Refractive Index
Refractive Index affects speed of light, Higher RI=slower speed of light
Polarized Filters
Reduce glare, only lets polarized light through, most objectives made this way to avoid birefringence
Birefringence
B=R/1000T
Michel-Levy Chart
Color chart which relates sample thickness, birefringence, and retardation
What does the fiber going black when putting the quartz wedge condenser mean?
It means the retardation value of the quartz wedge condenser = retardation value of the fiber
How does the quartz wedge condenser work?
Thicker for greater retardation value and thinner for lower retardation value.
What is different about the objective lens in Fluorescence?
says Fl
made of fluorite that doesn’t fluoresce
3 filters located under head of microscope in Fluorescence?
in one cube, not separate
Excitation Filter
Dichroic Filter
Emission Filter
Excitation filter
excites electrons, bandpass filter
Dichroic Filter
Long pass edge filter
Emission Filter
blocks excitation light, long pass edge filter
Types of Filters in Fluorescence?
Edge filters: Long Pass and Short Pass
Bandpass Filter
Long Pass Filter
Lets wavelengths longer than x nm pass through
Short Pass Filter
Lets wavelengths shorter than x nm pass through
Quenching(Fluorescence)
Absorption of emitted fluorescence by neighboring bonds/molecules
Photobleaching(Fluorescence)
Photon induced chemical damage
Primary/Auto-Flourescence
Fluoresces in its natural form
Secondary Fluorescence
Fluoresces after treatment with chemicals
Differences in Fluorescent Microscope v. Others
Light source is very intense
gives option of light sources in both visible and UV region
Fluorochromes
things that fluoresce, tend to have electrons in double/conjugated bonds