MBIO 2710 / Topic 7: Dark Reactions

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8 Terms

1
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What can rubisco also function as an E?

Rubisox (ribulose bisphosphate oxygenase).

2
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Why is rubixox’s second side reaction metabolically wasteful to the plant?

O2 used instead of CO2 → C2 product.

> Waste carbon: C2 product cannot enter Calvin cycle and thus cannot help fix carbon to make Glc → must enter a recycling pathway but expensive.

> Waste energy: In already expensive recycling pathway, carbon lost as CO2 + ATP/NADPH wasted.

> Reduces sugar yield: Some 3-PGA recovered, but less than if rubisco fixed CO2 directly.

3
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> For rubisco, What is the approx KM of CO2 and O2?

> For CO2, 9uM (higher affinity).

> For O2, 350um (lower affinity).

4
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> At 20ºC, what is the usual [CO2] and [O2] around us?

> What does this mean for the rubisco’s oxygenase vs carboxylase activity?

> For CO2, 10uM.

> For O2, 250uM.

> Reaction rate for rubisco is higher than ½ Vmax.

> Reaction rate for rubisox is lower than ½ Vmax.

> However, there is more O2 than CO2 at 20ºC.

> O2 has quantity advantage, while CO2 has affinity advantage.

> Every 1:3 to 1:4 rubisco reactions will be of the oxygenase type.

5
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What is the state of the ZS, CC, and thus rubisco under light conditions and under no light conditions?

Under light conditions

> ZS active → NADPH + ATP produced.

> CC runs → needs CO2.

> 3‑PGA products constantly consumed → low product levels pull rubisco forward in carboxylase mode.

Under no light conditions

> ZS inactive → no NADPH + ATP produced.

> No CO2 demand for CC → CC slows.

> 3PGA products not being used b/c CC slows → products accumulate → no product pull → oxygenase activity prevails.

6
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How does temp affect rubisco activity as carboxylase/oxygenase?

↑ Temp

Gas physics

↓ Gas solubility (gas escape solution more easily)

↓ CO2 solubility than O2 b/c CO2 less abundant

Enzymology

↑ Rubisco rxn rate → rubisco AS gets “looser”/less selective

Overall

↑ O2 affinity of rubisco relative to CO2

> Rubisox predominates.

7
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How do bundle sheath cells regulate photorespiration?

> Located under mesophyll cells, tightly packed w/ thick cell walls → less O2 exp & diffusion from outside (farther from stomata).

> Have high CO2 affinity PEP carboxylase too.

> No O2-utilizing side reaction → reduces rubisox activity.

8
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Why is the C4 pathway more energy‑intensive but beneficial?

> +2 ATP per CO₂ required (extra energy cost)

> But avoids wasteful rubisox rxn by concentrating CO2 in bundle sheath cells.