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Describe the morphology of vibrio
gram -, curved rods, facultative anaerobes, flagella
What environment does vibrio live in?
water, pH 7-9, acid-sensitive, 18-37C
What species of vibrio exist?
cholerae, parahaemolyticus, vulnificus
Where does V. cholerae come from?
brackish water, infected copepods, enters fecal-orally in shellfish/plankton, endemic in areas with poor sanitation, caused 7 pandemics
What serotypes of V. cholerae exist?
150 based on O antigen, O1/O139 cause cholera, O1 split into classical/el tor that have toxin coregulated pilus/cholera toxin, O139 has capsule
What are the symptoms of cholera?
2-3d after consumption, usually mild, vomiting, cramps, diarrhea, death in 18h-few days without treatment
Who does V. cholerae infect?
high infectious dose due to stomach acidity, people with low stomach acid like infants, elderly, blood type O
What adhesins contribute to V. cholerae virulence?
accessory colonization factors, outer membrane protein, toxin coregulated pilus, must overcome peristalsis and invade enterocytes
What toxins does V. cholerae have?
AB dimeric exotoxins, binding domain B helps absorption via receptor mediated endocytosis, active domain A disrupts cell function, cytolytic toxins are degradative enzymes that cause hemolysis, necrosis, lethal if IV
What is the mechanism of action of cholera toxin?
B subunit binds to GM1 receptor, receptor-mediated endocytosis, travels to ER, A fragment ADP-ribosylates GTP-binding protein by transferring ADP-ribose from NAD, which keeps adenyl cyclase “on”, increasing cAMP, stimulating protein kinase A to open ion channels, causing hypersecretion of fluids/electrolytes
What treatments exist for cholera?
rehydration therapy with oral NaCl, KCl, trisodium citrate, rice flour, IV antibiotics, 3 vaccines available but none offer long term protection
Where does V. parahaemolyticus come from?
fecal-oral transmission in raw seafood, usually warm oysters in sun on boats, causes GI/enteric and wound infection
What virulence factors does V. parahaemolyticus have?
2 variants of T3SS and hemolysins tdh/trh on pathogenicity islands
Where does V. vulnificus come from?
raw seafood, aquatic environments, causes wound infections that can lead to amputation, 80x more likely in immunocompromised/liver disease people
What are the virulence factors of V. vulnificus?
capsular polysaccharide endotoxin, iron acquisition, flagella motility, hemolysin/cytolysin, metalloprotease exotoxins
What treatments exist for V. vulnificus?
fluid therapy, acid/base adjustment, antibiotics, carriers detected via antibodies after infection, test sewage
Describe the morphology of Clostridium
gram +, straight/slightly curved rods, anaerobic, spore forming, acid-sensitive
What kinds of spores does Clostridium form?
mostly ovoid subterminal, tetani has round terminal
How does Clostridium work with saprophytes?
commensals in the human gut initiate decomposition by invading blood and gut after an animal dies
What species of Clostridium exist?
120, difficile, perfringens, botulinum, tetani
What is antibiotic-associated diarrhea?
when antibiotics wipe out normal flora, C. difficile spores germinate and cause severe colitis
What are the risk factors for C. difficile?
surgery, colon diseases, chemotherapy, kidney disease, proton pump inhibitors that reduce stomach acid
What is fecal microbiota transplantation?
instilling stool from healthy donor into sick person to restore healthy gut flora, recently approved 2022
Describe the morphology of C. perfringes
capsulated, nonmotile, 5 strains a-e, identified with nagler reaction
What diseases are caused by C. perfringes?
food poisoning, gas gangrene, diarrhea in goats, mortality high in lambs
What is the mechanism of a-toxin of C. perfringes?
C domain binds, N domain active site, cleaves phospholipids and destroys membrane
What are neuraminidases?
cleaves glycosidic linkages of neuraminic acids, catalyze sialic acid hydrolysis, increases membrane permeability
Describe the morphology of C. tetani
motile with flagella, 10 types distinguished by H and O antigens, killed by 1% iodine in water
What is the mechanism of tetanospasmin?
prevents action of inhibitory motor neurons by cleaving synaptobrevin II, increasing excitability of spinal cord
How is C. tetani treated?
stop toxin production, antibodies to neutralize unbound toxin, tdap vaccine
What environment does C. botulinum live in?
naturally in soil, anaerobic so likes canned food, honey, deep wounds
What are the effects of botulinum toxin?
most lethal toxin known, 1.3-2.1ng/kg iv, inhibit acetylcholine secretion causing paralysis and death if unable to breathe, blurred vision, drooping eyelids, slurred speech, difficulty swallowing, dry mouth, muscle weakness
What are the different types of botulism?
food borne, wound, infant, adult intestinal toxemia, iatrogenic
What is the mechanism of botulinum toxin?
heavy chain binds to gangliosides, receptor-mediated endocytosis, light chain enters cytoplasm, degrades SNARE proteins
What is the function of SNARE proteins?
synaptobrevin, syntaxin, SNAP-25, help fusion of vesicles with cell membrane, normally for exocytosis of acetylcholine
What are the different types of parasites?
protozoa, helminths, ectoparasites
What are protozoa?
single celled eukaryotes, enter body through any method
What some examples of protozoa?
giardia, cryptosporidia, toxoplasma, babesia, leishmania
Describe the life cycle of giardia
human definitive host, cysts ingested, multiply in gut, more cysts passed in stool
What are the symptoms of giardia?
diarrhea that doesn’t go away
Who does giardia infect?
kids in daycare, unsanitary water, types a-f can infect many species but mostly humans
How is giardia treated?
chlorinated water, antibiotics
Describe the life cycle of crystosporidium
2 forms of oocysts, one excreted as infectious and other has thin walls that bursts and replicates again
What are the symptoms of cryptosporidium?
watery, bloody diarrhea
Who does cryptosporidium infect?
young cattle, public pools, chlorination doesn’t kill it, just controls
Describe the life cycle of toxoplasma
rodents eat fecal oocysts, form tissue cysts, infected rodents eaten by cats, parasite replicates in cat gut, more oocysts excreted, mature outside 5d
Who does toxoplasma infect?
definitive host cats, but humans can get it from eating tissue cysts in meat from animals on farms with cats, or directly from cleaning litter boxes of pet cats, infected rodents have altered behavior, can cross placental barrier and cause abortions in sheep
Describe the life cycle of babesia
tick takes blood meal from infected rodent, replicates in tick gut, takes blood meal of another rodent/species and introduces sporozoites that infect RBCs
What are the symptoms of babesia?
fever, chills, anemia in immunocompromised
Describe the life cycle of leishmania
sandfly takes blood meal from infected human, multiplies in sandfly gut, takes blood meal of another human and injects parasite into skin, phagocytized by macrophages, multiplies and infects various cells
Who does leishmania infect?
definitive host humans, brazil, east africa, india, some species have reservoirs in stray dogs
What are the symptoms of leishmania?
visceral fever, weight loss, enlarged liver and spleen, 95% fatal if untreated, cutaneous skin lesions, lose mucous membranes
What are helminths?
roundworms/nematodes and flatworms/platyhelminths, flatworms divided into trematodes and cestodes
What some examples of roundworms/nematodes?
whipworms/trichuris, ascarids/toxocara canis, filarial worms/heartwor/lungworm
Describe the life cycle of whipworms/trichuris
eggs hatch in intestine, mate and multiply in gut, produce eggs passed in feces, eggs mature 10-60d outside
Describe the life cycle of toxocara canis
eggs hatch in intestine, larvae invade gut and travel through body to lungs, coughed up, swallowed again, mature worms produce eggs passed in feces
Who does toxocara canis infect?
travel to lungs in young dogs, form tissue cysts in older dogs and other species, can travel to fetus
What are the symptoms of toxocara canis?
depends where it migrates, liver, heart, respiratory, eye problems but mostly asymptomatic
Describe the life cycle of filarial worms/heartworm/lungworm
mosquito takes blood meal from infected dog, consuming microfilariae, parasite travels to salivary gland, takes blood meal from another dog/human, injecting parasite
What are the stages of development of filarial worms/heartworm/lungworm
L1-3 in mosquito, L3 deposited in skin of dog, mature to L4, migrates to muscles, mature to L5, enter blood stream, live in pulmonary artery, mate and produce microfilariae
Who does filarial worms/heartworm/lungworm infect?
definitive host dogs, can infect humans needs temp above 57 so spreads during warm seasons
What are the symptoms of filarial worms/heartworm/lungworm?
lesions in pulmonary vessels in humans, cough, exercise intolerance, heart failure in severe cases
What some examples of trematodes?
liver flukes: fasciola hepatica
Describe the life cycle of liver flukes
eggs passed in feces of ruminants/humans, infect and mature in snails, ruminants/human eats contaminated watercress, penetrate intestinal wall, live in bile duct, produce eggs
What are the symptoms of liver flukes?
holes in liver, fever, abdominal pain, jaundice, respiratory problems, 67% mortality in cattle
What some examples of cestodes?
taenia, echinococcus
Describe the morphology of a cestode
head/scolex and many segments/proglottids packed with eggs, are hemaphrodites
Describe the life cycle of taenia
human consumes raw infected meat, excrete 1000 proglottid segments with 50k eggs per segment into environment, consumed by pigs/cattle, invade intestine, travel to muscle
Describe the life cycle of echinococcus
ruminant ingests eggs in feces, dog consumes infected meat, passes eggs in feces, humans can ingest eggs and form cysts or infected meat and pass eggs
What is an enveloped virus?
has soft phospholipid bilayer with embedded proteins, can form strange shapes, vulnerable to disinfectants
What is a non-enveloped virus?
ball of protein, hard shell, symmetrical shape, resistant to disinfectants
What are the major surface proteins on influenza?
hemagglutinin and neurimidase
What are the subtypes of influenza?
H1-18, N1-11, almost all found in birds, last 2 of each in bats
What is antigenic drift?
slow accumulation of point mutations every time virus replicates
What is antigenic shift?
when 2 viruses infect same cell and new virus produced has mixed genome from both
What is LPAI?
H9N2, mild disease in chickens
What is HPAI?
H5N1, H5/7 can mutate into it, severe disease, 1 positive case means whole farm must be culled
How is avian influenza transmitted?
direct contact with feces, bedding, feed, water, equipment, but not airborne
What was the spanish flu?
1918, H1N1, 50mil dead, mostly due to 2nd pneumonia, no vaccines, antibiotics, controlled via education and masks
What was the asian flu?
1957, H2N2, 1-2mil dead, had antibiotics for pneumonia and vaccines
What was the swine flu?
2009, different H1N1, mostly mild, but vaccine development was too slow and missed peak
Why are birds not vaccinated in the US?
trade restrictions would prohibit any export of poultry if even 1 in the country was vaccinated due to masking symptoms
What is coronavirus?
enveloped virus with spike protein, big non-segmented RNA genome, no reassortment
What was SARS-CoV-1?
infection contained without vaccines due to testing, isolating, contact tracing, and asymptomatic people were rare, virus came from wild cats in live markets in asia
What was MERS?
2012 in saudi arabia, never took off because of low human-human spread, came from camels from bats
What was Nipah virus?
enveloped, non-segmented genome, came from pigs who ate contaminated fruit that bats also ate from, non pig farmers got it from contaminated sap, no vaccine
What was Hendra virus?
similar to nipah but in horses, vaccine for horses
What is Ebola?
enveloped, worm-shaped, causes leaky vessels, crying blood, anemia, hypovolemia, from bats
What are the major issues in food production?
food security, food safety, sustainability
What are the disadvantages of bacteriophage therapy?
strain specific, unstable efficacy, release bacterial endotoxins, immune response against phage, horizontal transfer of bacterial toxic gene
What are the disadvantages of vaccines?
specificity, short effectiveness, professionals, cost, delivery system for poultry
What are the disadvantages of natural antimicrobials?
unpredictable safety, low access to target, low uptake
What are the advantages of berry fruits?
black/blue berry promote probiotic growth, antioxidant, anti-inflammatory, poorly absorbed in small intestine so accumulate in large intestine
What are the advantages of citrus oil?
inhibits S. aureus biofilms, prevents mastitis
What are the advantages of olive?
enhance probiotics, decrease pathogenic bacteria, decrease inflammation
What metabolites are produced by commensal bacteria?
polypeptides, vit B, short chain FA, PUFAs
What are the characteristics of an ideal prebiotic?
inert polysaccharide, not absorbed in upper GI, able to alter microflora, enhance mineral absorption, selective substrate for a few bacteria
What are some examples of probiotics?
lactobacillus, S. thermophilus, B. bifidum
What are some examples of prebiotics?
beneo inulin, fructo-oligosaccharide
What are some disadvantages of a procommensal strategy?
long term side effects, may enhance pathogenic bacteria, lack of practical application on farms