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Clinical Chemistry
↳ Pre Analytic (Sample Processing)
.
↳ Analytic (Chemical Analysis)
.
↳ Post Analytic (Data Management)
Sample
Chemical
Data
CLINICAL CHEMISTRY:
.
↳ Pre Analytic (___________ Processing)
.
↳ Analytic (____________ Analysis)
.
↳ Post Analytic (_______ Management)
Method Evaluation
UNDER QUALITY MANAGEMENT:
.
↳ Used to verify the acceptability of new methods.
acceptability
METHOD EVALUATION:
.
↳ Used to verify the _______________ of new methods.
Quality Control
UNDER QUALITY MANAGEMENT:
.
↳ Insurance of a method to remain valid over time.
valid
QUALITY CONTROL:
.
↳ Insurance of a method to remain ________ over time.
Descriptive Statistics
↳ Used for monitoring test performance and QC.
performance
DESCRIPTIVE STATISTICS:
.
↳ Used for monitoring test ________________ and QC.
6 Sources of Analytic Variability
UNDER DESCRIPTIVE STATISTICS:
.
↳ Operator Technique
.
↳ Instrument Differences
.
↳ Test Accessories
.
↳ Contamination
.
↳ Environmental Conditions (Temperature, Humidity)
.
↳ Reagents
.
↳ Power Surges
.
↳ Matrix Effects (Hemolysis, Lipemia, Etc.)
Differences
Test
Humidity
Power
Matrix
SOURCES OF ANALYTIC VARIABILITY:
.
↳ Operator Technique
.
↳ Instrument ________________
.
↳ _______ Accessories
.
↳ Contamination
.
↳ Environmental Conditions (Temperature, _____________)
.
↳ Reagents
.
↳ _________ Surges
.
↳ ________ Effects (Hemolysis, Lipemia, Etc.)
Measures of Central Tendency
UNDER DESCRIPTIVE STATISTICS:
.
↳ Mean, median, mode.
Mean
UNDER MEASURES OF CENTRAL TENDENCY:
.
↳ Average score of a dataset.
Median
UNDER MEASURES OF CENTRAL TENDENCY:
.
↳ Middle value of the data set after the data have been ranked.
Mode
UNDER MEASURES OF CENTRAL TENDENCY:
.
↳ The most frequent occurring value in the dataset.
Measure of Spread
UNDER DESCRIPTIVE STATISTICS:
.
↳ Range, Standard Deviation (SD), Coefficient of Variation (CV).
Range
UNDER MEASURE OF SPREAD:
.
↳ Largest value in the data minus the smallest value.
minus
RANGE:
.
↳ Largest value in the data ________ the smallest value.
Standard Deviation (SD, s or σ)
UNDER MEASURE OF SPREAD:
.
↳ Represents the "average" distance from the mean.
.
↳ Degree of precision of a measurement.
distance
precision
STANDARD DEVIATION (SD, s or σ):
.
↳ Represents the "average" ____________ from the mean.
.
↳ Degree of _____________ of a measurement.
Coefficient of Variation
UNDER MEASURE OF SPREAD:
.
↳ Allows comparing SD with different units.
units
COEFFICIENT OF VARIATION:
.
↳ Allows comparing SD with different _______.
Measure of Shape
UNDER DESCRIPTIVE STATISTICS:
.
↳ Gaussian (Normal) Distribution "Bell Curve"
.
↳ 68.3% is between x̄±1SD, 95.4% is between x̄±2SD, 99.7% is between x̄±3SD.
Gaussian
68
4
99
MEASURE OF SHAPE:
.
↳ ___________ (Normal) Distribution "Bell Curve"
.
↳ ___.3% is between x̄±1SD, 95.__% is between x̄±2SD, ___.7% is between x̄±3SD.
Method Selection
Evaluation
Monitoring
3 Method of Evaluation
(MS, E, M)
Method Selection
UNDER METHOD OF EVALUATION:
.
↳ Journals (Scientific Literature)
.
↳ Product Specifications
Scientific
Specifications
METHOD SELECTION:
.
↳ Journals (______________ Literature)
.
↳ Product ___________________
Analytic Sensitivity
Analytic Specificity
Specificity
Analytic Measurement Range (AMR)
Clinically Reportable Range (CRR)
Limit of Detection (LoD)
In Blood Chemistry & Endocrinology Laboratory
7 Terms under Method Selection
(AS, AS, S, AMR, CRR, LD, IBC&EL)
Analytic Sensitivity
TERM UNDER METHOD SELECTION:
.
↳ Ability of a method to detect small quantities of an analyte.
.
↳ Refers to the lower limit of detection for a given analyte.
small
lower
detection
ANALYTIC SENSITIVITY:
.
↳ Ability of a method to detect _________ quantities of an analyte.
.
↳ Refers to the ________ limit of ______________ for a given analyte.
Analytic Specificity
TERM UNDER METHOD SELECTION:
.
↳ Ability of a method to detect only the analyte it is designed to determine.
analyte
ANALYTIC SPECIFICITY:
.
↳ Ability of a method to detect only the ___________ it is designed to determine.
Specificity
TERM UNDER METHOD SELECTION:
.
↳ Ability of a method to measure only the analyte of interest.
interest
SPECIFICITY:
.
↳ Ability of a method to measure only the analyte of ____________.
Analytic Measurement Range (AMR)
TERM UNDER METHOD SELECTION:
.
↳ Linear or dynamic range.
.
↳ Range of analyte concentrations that can be directly measured without dilution or concentration.
dynamic
concentrations
dilution
ANALYTIC MEASUREMENT RANGE (AMR):
.
↳ Linear or ____________ range.
.
↳ Range of analyte __________________ that can be directly measured without __________ or concentration.
Clinically Reportable Range (CRR)
TERM UNDER METHOD SELECTION:
.
↳ Range of analytes that a method can quantitatively report.
.
↳ Allows for dilution and concentration used to extend AMR.
quantitatively
dilution
AMR
CLINICALLY REPORTABLE RANGE (CRR):
.
↳ Range of analytes that a method can _________________ report.
.
↳ Allows for ___________ and concentration used to extend _______.
Limit of Detection (LoD)
TERM UNDER METHOD SELECTION:
.
↳ Lowest amount of analyte accurately detected by a method.
Lowest
LIMIT OF DETECTION (LoD):
.
↳ ___________ amount of analyte accurately detected by a method.
In Blood Chemistry & Endocrinology Laboratory
TERM UNDER METHOD SELECTION:
.
↳ Consider:
.
…..➙ Throughput
.
…..➙ Turnaround Time
.
…..➙ Cost
.
…..➙ Space Needs
.
…..➙ Disposal Needs
.
…..➙ Personnel Requirements
Throughput
Disposal
Requirements
IN BLOOD CHEMISTRY & ENDOCRINOLOGY LABORATORY:
.
↳ Consider:
.
…..➙ ______________
.
…..➙ Turnaround Time
.
…..➙ Cost
.
…..➙ Space Needs
.
…..➙ _____________ Needs
.
…..➙ Personnel ___________________
Determination of Imprecision
UNDER METHOD OF EVALUATION:
.
↳ Dispersion of repeated measurements about the mean due to analytic (random error).
.
↳ Random error varies from sample to sample.
.
↳ Causes:
.
…..➙ Instrument instability
.
…..➙ Temperature and reagent variation
.
…..➙ Handling techniques
.
…..➙ Operator variables
.
↳ Determined by repeated analysis study.
.
…..➙ Detects random error that affects reproducibility.
repeated
random
sample
Temperature
Handling
study
reproducibility
DETERMINATION OF IMPRECISION:
.
↳ Dispersion of ____________ measurements about the mean due to analytic (___________ error).
.
↳ Random error varies from sample to _______.
.
↳ Causes:
.
…..➙ Instrument instability
.
…..➙ ________________ and reagent variation
.
…..➙ _____________ techniques
.
…..➙ Operator variables
.
↳ Determined by repeated analysis _________.
.
…..➙ Detects random error that affects ____________________.
Repeated Analysis Study (Precision Study)
↳ 2 x 2 x 10 study
.
…..➙ 2 controls are run twice a day for 10 days.
.
…..➙ E.g., glucose in hyperglycemic (150 mg/dL) and normal range (90 mg/dL).
10
twice
normal
REPEATED ANALYSIS STUDY (PRECISION STUDY):
.
↳ 2 x 2 x ___ study
.
…..➙ 2 controls are run ________ a day for 10 days.
.
…..➙ E.g., glucose in hyperglycemic (150 mg/dL) and _________ range (90 mg/dL).
Determination of Inaccuracy
UNDER REPEATED ANALYSIS STUDY (PRECISION STUDY):
.
↳ Difference between a measured value and its true value due to systemic error (proportional or constant).
.
…..➙ Systemic Error = Always in one direction.
.
…..➙ Proportional Error = The magnitude of error is dependent on analyte concentration.
.
…..➙ Constant Error = The magnitude of error is constant and not dependent on analyte concentration.
.
↳ Can be determined by recovery study, interference study, and comparison of methods.
.
…..➙ Recovery = Ability of a test to measure a known amount of analyte (e.g. Ca2+) added to a matrix (e.g. CSF).
.
…..➙ Interference = Effect of an interferent (e.g. Hb) on the accuracy of detection of an analyte (e,g, troponin).
measured
systemic
one
analyte
constant
DETERMINATION OF INACCURACY:
.
↳ Difference between a ______________ value and its true value due to __________ error (proportional or constant).
.
…..➙ Systemic Error = Always in ______ direction.
.
…..➙ Proportional Error = The magnitude of error is dependent on ___________ concentration.
.
…..➙ Constant Error = The magnitude of error is ___________ and not dependent on analyte concentration.
Systemic Error
UNDER DETERMINATION OF INACCURACY:
.
➙ Always in one direction.
Proportional Error
UNDER DETERMINATION OF INACCURACY:
.
➙ The magnitude of error is dependent on analyte concentration.
Constant Error
UNDER DETERMINATION OF INACCURACY:
.
➙ The magnitude of error is constant and not dependent on analyte concentration.
recovery
comparison
matrix
detection
DETERMINATION OF INACCURACY:
.
↳ Can be determined by _____________ study, interference study, and __________________ of methods.
.
…..➙ Recovery = Ability of a test to measure a known amount of analyte (e.g. Ca2+) added to a _______ (e.g. CSF).
.
…..➙ Interference = Effect of an interferent (e.g. Hb) on the accuracy of ______________ of an analyte (e,g, troponin).
Recovery
UNDER DETERMINATION OF INACCURACY:
.
➙ Ability of a test to measure a known amount of analyte (e.g. Ca2+) added to a matrix (e.g. CSF).
Interference
UNDER DETERMINATION OF INACCURACY:
.
➙ Effect of an interferent (e.g. Hb) on the accuracy of detection of an analyte (e,g, troponin).
Recovery Studies
↳ Detects proportional error.
proportional
RECOVERY STUDIES:
.
↳ Detects ________________ error.
Interference Studies
↳ Detects constant error.
.
↳ Common interference:
.
…..➙ Hemolysis
.
…..➙ Lipemia
.
…..➙ Bilirubin
.
…..➙ Anticoagulant
.
…..➙ Preservatives
constant
Lipemia
Anticoagulant
INTERFERENCE STUDIES:
.
↳ Detects ___________ error.
.
↳ Common interference:
.
…..➙ Hemolysis
.
…..➙ ___________
.
…..➙ Bilirubin
.
…..➙ ________________
.
…..➙ Preservatives
Constant Error
UNDER INTERFERENCE STUDIES:
.
↳ Magnitude of error is constant and not dependent on analyte concentration.
analyte
CONSTANT ERROR:
.
↳ Magnitude of error is constant and not dependent on ________ concentration.
Comparison-of-Methods Studies
↳ Detects systemic error.
.
↳ The test method is compared with a reference method (gold standard).
.
…..➙ 40-100 specimens were run everyday over 8-20 days.
.
…..➙ A plot of the test-method data (y-axis) versus the comparative method (x-axis) is generated.
systemic
reference
20
test
comparative
COMPARISON-OF-METHODS STUDIES:
.
↳ Detects ____________ error.
.
↳ The test method is compared with a _____________ method (gold standard).
.
…..➙ 40-100 specimens were run everyday over 8-___ days.
.
…..➙ A plot of the _____-method data (y-axis) versus the ______________ method (x-axis) is generated.
Random Error
TYPES OF ERROR:
.
➙ Precision study.
Constant Error
TYPES OF ERROR:
.
➙ Interference studies.
Proportional Error
TYPES OF ERROR:
.
➙ Recovery experiment.
Systemic Error
TYPES OF ERROR:
.
➙ Comparison of methods.
Total Error
TYPES OF ERROR:
.
➙ Precision and COM.
Reference Interval
↳ Referred as reference ranges.
.
↳ A pair of medical decision points that span the limits of results expected for a given condition.
ranges
medical
limits
REFERENCE INTERVAL:
.
↳ Referred as reference _________.
.
↳ A pair of ___________ decision points that span the ________ of results expected for a given condition.
Normal Range
↳ Range of results between medical decision levels that correspond to ±2SD of results from a healthy patient.
2
healthy
NORMAL RANGE:
.
↳ Range of results between medical decision levels that correspond to ±__SD of results from a ___________ patient.
Confidence Interval
↳ Range of values that include a specific probability, usually 90% or 95%.
probability
95
CONFIDENCE INTERVAL:
.
↳ Range of values that include a specific ______________, usually 90% or ___%.
Medical Decision Level
↳ Value for an analyte that represents the boundary between different therapeutic approaches.
boundary
therapeutic
MEDICAL DECISION LEVEL:
.
↳ Value for an analyte that represents the ____________ between different _________________ approaches.
Therapeutic Range
↳ Reference interval applied to a therapeutic drug.
therapeutic
THERAPEUTIC RANGE:
.
↳ Reference interval applied to a _______________ drug.
Establishing a Reference Interval
↳ Done when there is no existing assay for an analyte or methodology in the laboratory.
.
↳ May require from 120 to ≈ 700 study individuals.
assay
methodology
700
ESTABLISHING A REFERENCE INTERVAL:
.
↳ Done when there is no existing ________ for an analyte or ______________ in the laboratory.
.
↳ May require from 120 to ≈ ______ study individuals.
Verifying a Reference Interval (Transference)
↳ Confirm the validity of an existing reference interval for an analyte using the same type of analytic system.
.
↳ Can require 20 study individuals.
validity
system
20
VERIFYING A REFERENCE INTERVAL (TRANSFERENCE):
.
↳ Confirm the __________ of an existing reference interval for an analyte using the same type of analytic _________.
.
↳ Can require ___ study individuals.
Clinical Sensitivity
↳ Proportion of individuals with that disease who test positively with the test.
Proportion
positively
CLINICAL SENSITIVITY:
.
↳ ________________ of individuals with that disease who test ____________ with the test.
True Positive
↳ Patient with a condition who are classified by a test to have the condition.
test
TRUE POSITIVE:
.
↳ Patient with a condition who are classified by a _______ to have the condition.
False Negative
↳ Patient with a condition who are classified by a test as not having the condition.
not
FALSE NEGATIVE:
.
↳ Patient with a condition who are classified by a test as _____ having the condition.
Diagnostic Sensitivity
Diagnostic Specificity
Positive Predictive Value
Negative Predictive Value
4 Measures of Diagnostic Efficiency
(DS, DS, PPV, NPV)
Diagnostic Sensitivity
MEASURES OF DIAGNOSTIC EFFICIENCY:
.
↳ Ability of a test to detect a given disease or condition.
.
↳ TP / TP + FN
disease
TP
DIAGNOSTIC SENSITIVITY:
.
↳ Ability of a test to detect a given ____________ or condition.
.
↳ ____ / TP + FN
Diagnostic Specificity
MEASURES OF DIAGNOSTIC EFFICIENCY:
.
↳ Ability of a test to detect the absence of a given disease or condition.
.
↳ TN / TN + FP
absence
FP
DIAGNOSTIC SPECIFICITY:
.
↳ Ability of a test to detect the ____________ of a given disease or condition.
.
↳ TN / TN + ____
Positive Predictive Value
MEASURES OF DIAGNOSTIC EFFICIENCY:
.
↳ Refers to the probability of an individual having the disease if the result is outside the reference range.
.
↳ TP / TP + FP
disease
outside
TP
POSITIVE PREDICTIVE VALUE:
.
↳ Refers to the probability of an individual having the __________ if the result is __________ the reference range.
.
↳ TP / ___ + FP
Negative Predictive Value
MEASURES OF DIAGNOSTIC EFFICIENCY:
.
↳ Refers to the probability that a patient does not have a disease if the result is within the reference range.
within
NEGATIVE PREDICTIVE VALUE:
.
↳ Refers to the probability that a patient does not have a disease if the result is __________ the reference range.
Quality Control.
↳ Check the reproducibility of a method by including control specimens in the run.
.
…..➙ Equipment out of calibration.
.
…..➙ Reagent may be deteriorating.
.
…..➙ Technologist may have made an error.
.
↳ Done by running QC materials (Controls)
.
…..➙ Should be the same as the specimens to be tested;
.
…..➙ Should span the clinically important range of the analyte (cutoff values);
.
……..● I.e. Glucose Assays
.
……….○ In Reference Range (80 mg/dL)
.
……….○ Hypoglycemia (50 mg/dL)
.
……….○ Hyperglycemia (150 mg/dL)
.
↳ Types of Controls
.
…..➙ Lyophilized (Dehydrated Powder)
.
……..● Reconstituted with its diluents.
.
…..➙ Stabilized Frozen Controls
.
……..● Needs to be evaluated for stability.
reproducibility
control
calibration
Reagent
error
Running
same
range
Glucose
50
150
QUALITY CONTROL:
.
↳ Check the _____________________ of a method by including ________ specimens in the run.
.
…..➙ Equipment out of _______________.
.
…..➙ _____________ may be deteriorating.
.
…..➙ Technologist may have made an ________.
.
↳ Done by ___________ QC Materials (Controls)
.
…..➙ Should be the ________ as the specimens to be tested;
.
…..➙ Should span the clinically important ___________ of the analyte (cutoff values);
.
……..● I.e. __________ Assays
.
……….○ In Reference Range (80 mg/dL)
.
……….○ Hypoglycemia (____ mg/dL)
.
……….○ Hyperglycemia (_____ mg/dL)
Lyophilized
diluents
Frozen
evaluated
QUALITY CONTROL:
.
↳ Types of Controls
.
…..➙ _____________ (Dehydrated Powder)
.
……….● Reconstituted with its __________.
.
…..➙ Stabilized __________ Controls
.
…..,,,..● Needs to be _____________ for stability.
Levey-Jennings Control Chart
QUALITY CONTROL (QC) CHARTS:
.
↳ Used to detect errors (inaccuracy and imprecision) over time.
.
…..➙ Random Errors = Due to variations in technique.
.
…..➙ Systemic Errors = Poorly made (contaminated) standards and reagents; instrumentation problems (function and calibration); poorly written procedure.
.
↳ Control values should be within statistical limits (expressed as the mean ±SD).
errors
variations
contaminated
function
procedure
statistical
mean
LEVEY-JENNINGS CONTROL CHART:
.
↳ Used to detect ________ (inaccuracy and imprecision) over time.
.
…..➙ Random Errors = Due to ____________ in technique.
.
…..➙ Systemic Errors = Poorly made (_________________) standards and reagents; instrumentation problems (__________ and calibration); poorly written ______________.
.
↳ Control values should be within _____________ limits (expressed as the _______ ±SD).