Week 4 - Molecular Markers

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Last updated 3:45 AM on 7/30/26
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20 Terms

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Molecular Markers

Specific known regions in genome where DNA varies between individuals

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10 Characteristics

Polymorphic

Discriminating

Multi-allelic

Co dominant

Non epistatic

Independent of environment

Neutral

Uniformly distributed

Reproducible

Economical

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Epistasis

1 gene affects/masks another gene

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Morphological Markers

Physical traits

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Morphological Markers - Cons

Low polymorphism

Affected by environment

Dominant

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Biochemical Markers

Proteins

Isozymes

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Biochemical Markers - Cons

Few loci

Not neutral

Not evenly distributed

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Homology

Descending from common ancestor

Share similar traits

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Analogy

Converging from different ancestor

Share similar function

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Tandem Repeats

Same sequence repeated back to back

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Microsatellites

STRs

SSRs

Short

Highly polymorphic

Suitable for PCR

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Microsatellites - Motif Length

2-6 bp

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Microsatellites - Name (AC)n

Dinucleotide

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Minisatellites

VNTRs

Long

Polymorphic

Not suitable for PCR

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Minisatellites - Motif Length

10-100 bp

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Minisatellites - Discovery

1985

Alec Jeffreys

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Interspersed Repeats - Compare

SINE = 100-400 bp

LINE = ~600bp

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Single Nucleotide Polymorphisms

Most common

Non coding regions

Originate spontaneous mutations - new SNP are rare

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ABO Gene Location

Chromosome 9

locus9q34

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Sickle Cell Anaemia - SNP Process

  1. SNP on beta globin gene (HBB)

  2. A → T

  3. Glutamic acid → Valine

  4. Low O2

  5. Form fibrous aggregates

  6. Sickle shape