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Effects of sleep
- decreased muscle activity
- naturall recurring
- decreased consciousness + responsiveness
- reversible physiological state
- altered brain activity
Outline the 4 stages of the sleep cycle
N1, N2, N3, REM
Outline N1 stage
- 5% of sleep cycle
- decreased brain activity
- lightest sleep
- memory consolidation
Outline N2 stage
- 50%
- decreased temp.
- decreased muscle activity
- decreased breathing
Outline N3 stage
- 25%
- deepest sleep
- memory
- repair
- immunity
Outline REM
- 25%
- Increased brain activity
- memory and learning
- dreaming
- muscle atonia
What is melatonin
sleep hormone
what is serotonin
sleep and arousal
dopamine
emotional processing
acetylcholine
memory consolidation
GABA
restful, restorative sleep
Histmanine
arousal
cortisol
stress, arousal
epinephrine
arousal
Outline the role of the HYPOTHALAMUS regarding arousal from sleep
releases Orexin and histamine --> arousal
Outline the role of the BASAL FOREBRAIN regarding arousal from sleep
releases ACh --> cortical activation
Outline the role of the SCN regarding arousal from sleep
receives signals from retina
signals to pineal gland to stop releasing melatonin
Outline the role of the VLPO regarding arousal from sleep
inhibited by decreasing adenosine and ACh, serotonin, and norepinephrine from brainstem --> arousal
Outline the role of the PONS regarding arousal from sleep
neurons produce ACh exciting Thalamus
Outline the role of the RETICULAR FORMATION regarding arousal from sleep
serotonin, dopamine, norepenephrine. --> cortical activation
Outline the role of the ADRENAL GLAND regarding arousal from sleep
cortisol and norepenephrine --> arousal
Outline the role of the THALAMUS regarding arousal from sleep
increases sensory relay to cortex, and consciousness
Outline the role of the CEREBRAL CORTEX regarding arousal from sleep
receives increased sensory relay from thalamus --> consciousness
Outline the role of the HYPOTHALAMUS regarding sleep onset
contains SCN and VLPO
Outline the role of the BASAL FOREBRAIN regarding sleep onset
releases GABA inhibiting brainstem nuclei --> sleep
Outline the role of the SCN regarding sleep onset
receives signals from retina
signals to pineal gland to release melatonin
Outline the role of the VLPO regarding sleep onset
activated by adenosine
releases GABA inhibiting arousal centres
Outline the role of the PONS regarding sleep onset
signals to hypothalamus --> REM
Outline the role of the AMYGDALA AND HIPPO. regarding sleep onset
memory and dreaming
Outline the role of the RETICULAR FORMATION regarding sleep onset
inhibited by GABA from the VLPO and basal forebrain
Outline the role of the THALAMUS regarding sleep onset
decreases sensory relay to cortex --> sleep
Outline the role of the PINEAL GLAND regarding sleep onset
releasing melatonin --> sleep
Outline the role of the CEREBRAL CORTEX regarding sleep onset
receives reduced sensory relay from hypothalamus, reducing consciousness
memory and learning in NREM sleep
strengthening of declarative memories. hippocampus and cortex
memory and learning in REM sleep
consolidation of emotional memories and learned procedural tasks. amygdala and cortex
repair and detoxification in NREM sleep
- glymphatic system clears metabolic waste via CSF and lympatic system, e.g., amyloid beta proteins
- GH promotes tissues repair, muscle and bone growth, and cell regeneration
immune function in NREM sleep
- increase in GH levels to support immune cell proliferation/repair
- cytokines released to fight infections, inflammation
- support of T-cell memory and antibody function
How do sleep, eating, and breathing interact normally?
Sleep, gut microbes, and breathing regulate each other: healthy microbiota support sleep hormones; normal breathing supports NREM/REM; low inflammation keeps all three stable.
What happens when sleep is disrupted?
↓ serotonin/melatonin, ↑ cortisol & cytokines → gut dysbiosis, inflammation, impaired breathing, and fragmented sleep.
What are the measurements of sleep?
EEG
EOG
EMG
ECG
Outline EEG
spontaneous electrical activity of cortical neurons neurons
--> sleep stages
Outline EOG
eye movements
--> REM
Outline EMG
muscle activity (chin)
--> sleep-related movement disorders
Outline ECG
heart rhythm --> sleep disorders (apnea)
What is sleep pressure?
Circadian drive for wake vs homeostatic drive for sleep
consequences of sleep deprivation
- weakened immune system
- cognitive impairment
- hormone imbalance
- low energy levels
- mood swings and irritability
- increased risk of chronic diseases/obesity/accidents
Outline the sleep changes across the lifespan
- decreased sleep with age (brain development)
infants --> shorter sleep cycles, more REM
Circadian clock
SCN-driven 24-hour rhythm regulating sleep, hormones, and behaviour.
Light entrainment
Light → retinal ganglion cells → SCN → melatonin suppressed → circadian clock shifted.
Phase response curve
Morning light advances the clock; evening/night light delays the clock.
Eastward travel light strategy
Need phase advance → seek morning light, avoid evening light.
Westward travel light strategy
Need phase delay → seek evening light, avoid morning light.
Circadian desynchrony
Internal clock out of sync with environment → sleep, mood, metabolic disruption.
Social jetlag
Difference between biological clock and social schedule → associated with poor sleep and health risks.
Social jetlag across lifespan
Highest in adolescence; declines with age.
How are the SCN and peripheral clocks synchronised?
Light, activity, meals and temperature
How do rhythms feed back?
They regulate clock function via hormonal + neuronal signalling.
Effect of single exercise bout on circadian phase
Night: delays phase; Morning: advances phase.
When is exercise most beneficial for cardiovascular health?
Midday-afternoon exercise.
What intensity improves metabolic outcomes?
Moderate (50-70% max HR).
Exercise effects on sleep
↑ sleep quantity, ↑ SWS, ↓ sleep latency.
What intensity improves sleep best?
Moderate > vigorous.
How does night-eating affect rhythms?
Disrupts hormonal + neurotransmitter rhythms → metabolic dysregulation.
What system is strongly controlled by circadian rhythms?
The GI system (motility, enzymes, antioxidants).
How does misaligned feeding impair metabolism?
Alters clock-gene expression → metabolic impairment.
Mediterranean diet effect on sleep
Improved sleep, ↓ inflammation, neuroprotection via omega-3.
Key nutrient for melatonin synthesis
Tryptophan.
Moderate exercise at night causes
Phase delay.
What is SUDI?
Umbrella term for all sudden unexpected deaths <1 year.
What is SIDS?
Sudden unexplained death in infant <1 year with no cause after complete investigation.
Peak incidence of SIDS
2-4 months.
Season with highest incidence
Winter.
Why are males at higher risk?
Male infants show greater vulnerability (consistent but unclear why).
Non-modifiable SIDS risk factors
Male sex, prematurity, low birth weight, prenatal smoke/drug exposure, infection, genetics.
Modifiable SIDS risk factors
Prone sleeping, co-sleeping, soft bedding, overheating, parental smoking.
Triple-risk model components
Vulnerable infant + critical developmental period + external stressor.
Physiological abnormalities in SIDS
Impaired gas exchange, poor arousal, unstable heart rate.
Key brainstem abnormality
Abnormal serotonin (5-HT) receptor binding/function.
Neurotransmitter abnormalities
Altered ACh and GABAergic signalling.
Key inflammatory findings
Elevated IL-6 and IL-10 in CSF.
Role of BDNF
Growth factor abnormalities impair arousal and respiratory regulation.
Important genetic polymorphism
Long QT syndrome polymorphisms ↑ risk of fatal arrhythmia.
Common prodromal symptoms before SIDS
Mild respiratory infection days-weeks before death.
Cause of HAT
Trypanosoma brucei infection.
Vector
Tsetse fly.
Two subspecies
T. b. gambiense (chronic) & T. b. rhodesiense (acute).
Course of T. b. rhodesiense
Acute febrile illness → CNS invasion → death in months.
Course of T. b. gambiense
Slow, progressive illness over ~3 years.
Why "sleeping sickness"?
Profound sleep/wake disruption, altered temperature + endocrine rhythms.
Main question about symptoms
Are changes due to illness/fatigue or true circadian disruption?
Effect on locomotor activity
Infected mice show reduced wheel-running.
Effect on circadian sleep/feeding
Disrupted feeding, fragmented sleep, shortened circadian period.
Key circadian timing effect
Phase advance during rest phase.
Does Plasmodium infection alter circadian period?
No, period remains unchanged.
What shortens circadian period?
Direct presence of T. brucei parasites, not immune response.
Overall conclusion
T. brucei directly disrupts host circadian machinery at organism, tissue, and cellular levels.
Sedation (definition)
Reduction in excitement, vigilance, and physiological arousal.
Hypnosis (definition)
Drug-induced ability to cause drowsiness and sleep.
Effects of hypnotics
↓ sleep latency and ↑ duration of sleep.
Melatonin synthesis pathway
Tryptophan → 5-hydroxytryptophan → Serotonin → N-acetylserotonin → Melatonin.