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microbiology
study of microbes found in soil, water, and air, often too small to be seen
microorganisms/microbes
cellular living and nonliving/non-cellular organisms/entities (viruses and prions)
bioremediation
processes that use bacteria to clean up toxic wastes.
gene therapy
viruses are used to carry replacements for defective or missing genes into human cells
e. coli (gut bacteria)
bacteria in the gut that produce vitamin K, an essential factor for blood clotting in humans
bacteria
prokaryotic microorganism, unicellular
archaea
prokaryotic microorganism, unicellular
fungi
eukaryotic microorganisms, unicellular (yeast) or multicellular (mold)
protozoa
eukaryotic microorganism, unicellular.
algae
eukaryotic microorganisms, unicellular or multicellular
helminths
eukaryotic organism, multicellular
viruses
noncellular, nonliving, not cells
prions
noncellular, nonliving, not cells
robert hooke
compound microscope, observed nematodes, mites, mold filaments, and thin cork, coined the term "cells"
anton van leeuwenhoek
first person to observe bacteria using a single-lens microscope; father of microbiology
spontaneous generation
life arises from nonliving matter, "vital force" is necessary for life
biogenesis
living cells arise from preexisting living cells
louis pasteur's swan-neck flask experiment
meat broth boiled in swan-neck flask, intact flasks remained sterile while broken necks allowed microbes to appear, disproved spontaneous generation
germ theory of disease
principle that specific diseases are caused by microscopic "germs"
ignaz semmelweis
hand-washing reduce the number of women dying after childbirth
joseph lister
dressed surgical wounds and washed with phenol, demonstrating that antisepsis during surgery prevents patient death
robert koch
specific microbe causes a specific disease
edward jenner
inoculated a person with cowpox virus to confer immunity to smallpox, demonstrating that exposure to a milder disease form can produce immunity
alexander fleming
discovered first antibiotic by accident
louis pasteur
discovered the microbial basis of fermentation, showed that supplying oxygen does not enable spontaneous generation
colonization
ability of microbes to stay attached to the body surface and replicate
adhesins
enable microbiota to attach to host cells
infection
pathogen/parasie enters and grows on host, most no symptoms
disease
patient develops symptoms
latent infection
hidden, inactive for periods of time
focal infection
localized infection that spreads
disseminated infection
localized infection that spreads, affecting multiple organ systems
metastatic infection
site of infection resulting from dissemination
bacteremia
presence of bacteria in blood
septicemia
bacteria multiplying in blood
virulence
level of harm caused by pathogen
primary pathogen
likely to cause disease after infection
opportunistic pathogen
less likely to cause disease after infection
LD50
lethal dose
ID_
infectious dose
signs
can be observed
symptoms
experienced by person
syndrome
signs and symptoms that characterize a condition
sequelae
damage to host tissue when killing microrbe
stages of infectious disease
incubation, prodromal, illness, decline, convalescence
7 F’s
flies, food, fingers, formites, feces, fluid (body), fornication
formite
inanimate object
vehicle
food, water, air
light microscope with oil
1000x
shorter wavelength
higher resolution
light microscope (LM)
stained samples, cell dead, most common
phase contrast microscope (PCM)
stained or unstained samples, cell alive, see shape
fluorescence microscopy (FM)
stained with florescent dye, cell alive or dead
scanning electron microspoy (SEM)
3d image, much detail, cell dead
transmission electron microscopy (TEM)
shows sections of cells internal, cell dead
bacillus
plural, bacilli, rods (most common)
coccus
plural, cocci, spheres (most common)
vibrio
curved rod, bean shape
spirillum
spiral shape, thick and rigid
spirochete
spiral shape, thin and flexible
pleomorphism
some cells within single species can vary in shape and size
absorption
object blocks part of the light
reflection
reflecting 3d surface image
refraction
lens magnifies the image
scattering
dark field, background dark sample bright
immersion oil
100x, keeps light from refracing
types of light microscopy
compound light, dark field, phase-contrast, differential interference contrast, fluorescence, confocal
compound microscope
multiple lens to make image look normal
bright-field microscopy
light absorbed, cell appears dark against bright background
stains bind to
negative charges in dna/rna
simple stain
single dye, visualize shapes and structures
differential stain
stains two different types of cells two different colors
gram staining
1884, christian gram
gram positive cells: retain stain, appear dark purple
gram negative cells: colorless, counterstained pink
gram variable bacteria
do not consistently stain (old culture, lose color, purple then pink)
no gram reaction
do not respond to gram staining, no cell wall
acid-fast
resistant to stain
negative stain of capsules
acidic dyes, see outer structure of cell, background darker
dark-field microscopy
field dark, cell bright
phase contrast microscopy
visualize intercellular com
fluorescence microscopy
uses UV light and fluorescence, detect specific microbes and subcellular structures
transmission electron microscopy (TEM)
electron veams penetrate thin slice of tissue w/ high resolution
scanning electron microscopy (SEM)
stain, electron beam scan specimen, reveals contours of 3d surface