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catalyst
speeds up reaction by lowering activation energy/increasing rate, does NOT cause reactions
enzymes
proteins that act as biological catalysts, does not change in chemical reaction
Ribozymes
RNA molecules that function as enzymes
reactants
substrate, binds to active site
Energy Barrier/ Transition state
activation energy, energy needed to start a reaction
enzyme-substrate complex
when a substrate binds to the active site of an enzyme
inducing strain
enzyme stretches substrate causing it to go into transition state
substrate orientation
enzymes bring specific atoms to create bonds to lower activation energy
adding chemical groups
R-groups (amino acids) are added to break covalent bonds on the substrate
induced fit
The change in shape of the active site of an enzyme so that it binds more snugly to the substrate, induced by entry of the substrate.
cofactors
inorganic ions that bind to enzymes
prosthetic group
permanently bound to enzyme
saturated
all of enzymes active sites are full of substrate, plateau on graph
turnover rate
how long it takes for an enzyme to catalyze a reaction
metabolic pathways
product of a reaction is a substrate for the next reaction
Homeostasis
The maintenance of stable internal conditions
irreversible inhibition
inhibitor covalently bonds in the active site and permanently inactivates the enzyme
competitive reversible inhibition
inhibitor binds to active site, temporarily stops reactions
noncompetitive reversible inhibition
inhibitors bind to allosteric site, changes enzyme shape, slowing reaction rate down
allosteric regulation
molecule binds to enzyme (anywhere but the active site)
covalent modification
addiction of covalent molecules that change enzyme shape
noncovalent bonding
formation of hydrogen or ionic bonds; typically reversible
protein kinase
The enzyme that transfers phosphate groups from ATP to protein.
commitment step
the first reaction in a metabolic pathway
feedback inhibition
end product is in high concentration and binds to enzyme causing inactivation, stopping the production of the product (to save energy/resources)
law of mass action
the higher the H+ concentration, the more reaction is driven to the left (nonionic glutamic acid) to the less hydrophilic form.
temperature
warming increases chemical reaction rate to an extent (denature at certain degree)
isozymes
2 enzymes that can catalyze the same reaction