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Bacteria and their environment
bacteria must respond quickly to changes in their environment. one of the main ways it does this is by regulating gene expression
What is gene regulation
Gene regulation allows the cell to turn off and on genes depending on whether or not they are needed.
operon model and operons
the operon model is the system for describing bacterial gene regulation. An operon is a group of genes transcribed together as one mRNA under the control of a single promoter operator. Operons allow bacteria to coordinate expression of genes in the same pathway.
inducible operons
usually involved in catabolic pathways
normally OFF but can be turned ON when the substrate is present
controlled by inactivating a repressor when and inducer binds to it
Repressive operons
usually involved in biosynthetic pathways
normally on but can be turned off when end product is abundant
Controlled by activating repressor when a corepressor binds to it
Structure of an operon
Inducible and repressible act different but their structure is similar. Promoter: where RNA polymerase binds. Operator: binding site for regulatory protein and structural genes: encode proteins needed for the pathway. Some operons also have binding sites, such as the UP site for CAP in the lac operon. Transcription depends on whether regulatory proteins block or assist RNA polymerase
inducible operons: the Lac operon
The lac operon of E.coli is an inducible operon. it allows the cell to metabolise lactose only when glucose is scarce and lactose is available.
Lac operon is OFF when..
when lactose is absent. the lacl repressor is active and it binds to the operator and blocks RNA polymerase. A DNA loop forms that prevents transcription
Lac operon ON when
when lactose is present. A lactose derivative binds the repressor. this causes a conformational change. the repressor cannot bind to the operator. RNA polymerase now transcribes the operon
Positive control by CAP-cAMP
the lac promoter is weak. Maximum transcription requires CAP. when glucose is low cAMP levels rise. cAMP binds to the UP site. this impoves RNA polymerase binding. this ensures glucose is used first which is more efficient
Repressible operons the trp operon
the trp operon contains genes required for tryptophan biosynthesis, Because tryptophan is essential the operon is normally ON
trp operon ON
when tryptophan is scarce. the trp repressor is inactive on its own. it cannot bind the operator. rna polymerase can freely transcribe the operon. cells need to make tryptophan so transcription proceeds.
trp operon OFF
when tryptophan is abundant. Tryptophan acts as a corepressor. It binds the trp repressor and activates it. The active repressor binds the operator and blocks transcription. This prevents overproduction of tryptophan, which saves energy