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Gastrointestinal tract or GI tract
The pathway from the mouth to the anus. Most organs are protected by the peritoneum. Also, digest food, absorb nutrients and water into the blood and eliminates wastes.
Accessory digestive organs
Involved in grinding food or providing digestive secretions.
What are the components of the gastrointestinal tract?
Mouth
Esophagus
Stomach
Small intestine
Large intestine
Rectum/anus
What are the accessory digestive organs?
Tongue/Teeth
Salivary glands
Liver
Gallbladder
Pancreas
Esophagus, Stomach, and Duodenum
Regions are almost free of microbes. Peristalsis and rapid transport of food help prevent microbial colonization.
Tongue, Teeth, Jejunum, Ileum, Colon and Rectum
Viridans’s streptococci are most prevalent in this region.
The Microbiota here are microbial antagonists and mucous membrane prevents entry of microbes into the bloodstream.
Lower small intestine and the colon.
Dental Caries
Causative agent: streptococcus mutants
Classification: Low G+C Gram positive, viridian streptococci
Signs/Symptoms: appears as holes or pits in the teeth. Tartar
Pathogenesis: secrete dextran and has fimbriae allows biofilm formation.
Epidemiology: experienced by most adults. Diets high in sucrose increase risk of decay.
Diagnosis: visual inspection
Treatment: filling cavities if caught early.
Prevention: good oral hygiene.
Periodontal Disease
Causative agent: porphyromonas gingvalis
Classification: Gram negative bacillus, phylum bacteroidetes
Signs/Symptoms: gums are swollen, tender, bright red, and bleeding
Pathogenesis: secretes proteases that break down gingival tissue.
Epidemiology: experienced by most adults. Diets high in sucrose increase risk of decay.
Diagnosis: inspection of gums
Treatment: scaling and use of antibacterial rinses
Prevention: good oral hygiene
Campylobacter Diarrhea
Causative agent: campylobacter jejuni
Classification: gram negative, epsilonproteobacteria
Signs/Symptoms: bloody diarrhea, lesions, inflammation
Pathogenesis: virulence factors: adhesions, cytotoxins, endotoxins (lipid A)
Epidemiology: responsible for more cases of diarrhea. CDC : 1 million cases each year are infected.
Diagnosis: based on signs/symptoms, presence of bacterium in stool.
Treatment: most cases resolve without treatment
Prevention: proper hygiene after handling of raw poultry.
Antimicrobial-Associated Diarrhea
Causative agent: Clostridium difficile
Classification: Low G+C Gram positive bacillus, produce endospores
Signs/Symptoms: diarrhea and pseudo membrane colitis (yellow lesions)
Pathogenesis: antimicrobial use facilitates overgrowth. Remains in colon and don’t move into blood. Two toxins: A & B
Epidemiology: any antimicrobial can trigger disease. Byproduct of modern medicine.
Diagnosis: presence of toxins in stool or colonoscopy
Treatment: metronidazole and vancomycin, do not treat with anti diarrhea drugs.
Prevention: avoid unnecessary use of antimicrobials, personal hygiene including staff.
Bacterial Food Poisoning
Causative agent: staphylococcus aureus
Classification: Low G+C Gram Positive
Signs/Symptoms: nausea, vomiting, diarrhea, cramping, fever, loss of appetite.
Pathogenesis: S. Aureus produces 5 enterotoxins (A through E)
Epidemiology: social functions, many cases go unreported
Diagnosis: based on signs and symptoms
Treatment: replacement of fluid and electrolytes
Prevention: proper hygiene and handling of foods.
Viral Gastroenteritis
Causative agent: Noravirus(non enveloped) , Rotavirus( non enveloped)
Classification: NV: positive sense, single RNA virus
RV: double stranded RNA virus
Signs/Symptoms: similar to bacterial gastroenteritis, dehydration
Pathogenesis: infect cells lining intestinal tract and lytic replication. Lysis of cells, loss of functions
Epidemiology: transmitted by fecal to oral route, Noravirus cause 90% of cases.
Diagnosis: serological tests distinguishes among viruses
Treatment: fluid and electrolyte replacement
Prevention: proper treatment of water and sewage, good hygiene and vaccines
Pinworms
Causative agent: enterobius vermiculans
Classification: nematode
Signs/Symptoms: Perianal itching, irritability, decreased appetite, 1/3 of cases asymptomatic
Pathogenesis: female deposits eggs in perianal region at night, eggs can be dislodged and spread disease.
Epidemiology: infections common in children, most common parasitic worm in US.
Diagnosis: identification of eggs or adult pinworms
Treatment: pyrantel pamoate or mebendazole
Prevention: strict personal hygiene
Hepatitis A
Causative agent & Classification: non-enveloped, positive sense, single stranded RNA virus
Hepatitis B
Causative agent & Classification: enveloped, partially double stranded DNA virus
Hepatitis C
Causative agent & Classification:enveloped, single stranded RNA virus, positive sense
Hepatitis A, B, C
Signs/Symptoms: jaundice , abdominal pain, fatigue, vomiting, weight loss
Pathogenesis: liver damage due to host immune response.
Epidemiology: A: fecal to oral. B &C: bodily fluids
Diagnosis: observation of jaundice, enlarged liver, presence of proteins, serological tests
Treatment: supportive care, alpha interferon and nucleotide analogs
Prevention: proper hygiene, protected sex, abstinence, vaccinations