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What are pathogens?
microorganisms that cause disease
What is the job of a decomposer?
breaks down dead plants and animals
Give examples of a decomposer.
bacteria and fungi
What are prokaryotes?
- simple cells
- smaller than eukaryote
- lack nucleus and organelles 
- i.e.: bacteria and archaea
What are eukaryotes?
- complex cells
- membrane bound organelles
- i.e.: algae, protozoa, molds, yeast, worms, arthropods
What are the six microorganisms?
- algae
- bacteria
- virus
- protozoa
- fungi
- helminths (worms)
Define genetic engineering.
manipulation of genes in organisms
Define microorganisms.
organisms that are too small to be seen with eyes
What is biotechnology?
Manipulation of (living) microorganisms to make products in an industrial setting
What are some examples of biotechnology?
- production of foods
- production of drugs
- production of vaccines
- yeast turning into alcohol
What are viruses?
- acellular, non-living particles 
- uses host cells
- cannot reproduce on their own
What make up viruses?
- nucleic acid
- protein
Who invented the microscope and magnifying lenses?
Antonie van Leeuwenhoek
Read Making connections 1.1. Look at the contributions of Louis Pasteur.
- father of microbiology
- recognised small microbes cause disease
- developed pasteurisation
- developed 2 vaccines: rabies & anthrax
- demonstrated Germ Theory
List out the process of the scientific method.
- observe
- question
- research
- hypothesise
- experiment
- test hypothesis 
- draw conclusion
- report
- develop into theory
What is spontaneous generation?
belief that some form of life forms out of the blue
What are Koch's postulates?
series of proof that verified Germ Theory
What did Koch's postulates establish?
established whether an organism was pathogenic and what disease it caused
List taxons in order from most to least inclusive (TEST QUESTION)
- domain
- kingdom
- phylum
- class
- order
- family
- genus
- species
* DEAR KING PHILIP CAME FOR GOOD SOUP *
What is taxonomy?
organising, classifying, and naming living things
What is the smallest/most limited taxon?
species
Understand how to write the scientific name of an organism.
- genus => species
- italicise or underline
- capitalise genus
- lowercase species
Define phylogeny.
- natural relatedness between groups of living things
- THINK OF EVOLUTION
What does an epidemiologist do?
tracts the spread of an infectious disease to its source
What are monerans?
- bacteria and archaea
- prokaryotic cells
- unicellular
What are protists?
- algae and protozoa
- eukaryotic cells
- simple/ unicellular/ multicellular/ colonial organisms
What are fungi?
- ascomycetes
- basidiomycetes
- eukaryotic cells
- unicellular/multicellular
- cell walls
- not photosynthetic
What are plants?
- angiosperms
- ferns
- eukaryotic cells
- multicellular
- cell wall
- are photosynthetic
What are animals?
- arthropods
- chordates
- eukaryotic cells
- multicellular
- cell membrane
- derive nutrients from other organisms
Define helminths.
parasitic worms
What is photosynthesis?
- convert light energy (from sun) into chemical energy to function properly
- produces oxygen
- carbon dioxide converts into organic material
What are parasites?
- microorganism that lives on/inside a host
- derives nutrients from infected host
- cause damage/harm to host
What was Joseph Lister's contribution to science?
introduced antiseptic techniques
Who determined that diseases were caused by specific organisms?
Robert Koch
What was the disease and bacterium that Koch discovered?
- disease: anthrax
- bacterium: Bacillus anthracis
What are the rules when giving an organism a scientific name?
- capitalise genus and lowercase species
- both are italicised or underlined
- can be abbreviated with initial of genus
- i.e.: Staphylococcus aureus => S. aureus
Who proposed assigning organisms to one of three domains?
- Carl Woese 
- George Fox
Who are the main decomposers?
- bacteria
- fungi
What is the most common infectious disease worldwide prior to COVID-19?
HIV/AIDS
What is a vector?
- living organism that carries/spread disease
- animal to animal
- animal to human
- i.e.: mosquitoes, fleas, ticks
How is Lyme disease transmitted?
ticks
How is Zika and Malaria transmitted?
diseased mosquitoes
Do prokaryotes or eukaryotes have organelles?
eukaryotic cells
What are the 3 domains of life?
- bacteria
- eukarya
- archaea
What is Ferdinand Cohn's contribution to microbiology?
- demonstrated the presence of heat-resistant forms of some microbes
- endospores are harder to kill
What is biomediation?
- using living organisms to remedy an environmental problem
- bring balance back into environment
what chronic conditions are associated with microbial agents?
- gastric ulcers (H. pylori)
- type 1 diabetes
- chlamydia (infertility)
- HPV (cervical cancer)
What does the branch of immunology study?
- study reactions caused by invading microbes
- i.e.: hives => immune response
Define zoonosis
- disease that can be transmitted to humans from infected animals
- i.e.: rabies
What is a deductive approach when testing a hypothesis?
testing to prove hypothesis
What is inductive reasoning?
observation and then hypothesis
What are emerging diseases?
- older identified diseases that are reported in increasing numbers
What is a theory?
explanation/statement of why things happen (has not been tested)
What are the 6 I's
- inoculation
- incubation
- isolation
- inspection
- information gathering
- identification
Define inoculation.
introduction of sample into a container of media to produce a culture
Define incubation.
controlled environment that enables growth of cultures
Define isolation.
separation of one specific from another
Define inspection.
observation of appearance of growth characteristics
Define information gathering.
gathering information based on observation
Define identification.
connection of info to identify specimen
Give examples of microbiological media.
- agar
- enriched
- synthetic
- complex/ non-synthetic
- broth
- live
- solid
What is the purpose of solid medium?
supports growth and isolation of colonies on its surface
Define pure culture.
single species growing in container
What does it mean when a culture becomes contaminated?
exposure to another form of specimen
What is the purpose of a selective medium?
contains ingredients that inhibit growth of some microbes and encourage growth of another
What is pour plate?
- nutrient broth and gelatin is heated, poured, and swirled into petri dish
- specimens found throughout and on surface of agar
What medium will grow fastidious bacteria?
enriched media
What is reducing medium?
- contains substance to remove oxygen
- anaerobic bacteria
What is a synthetic medium?
- contains pure organic and inorganic compounds
- chemically defined
What is the purpose of a differential medium?
distinguished between different types of microbes
Why would you use a medium that contains thioglycolic acid?
culture anaerobic organisms
Mannitol salt agar is selective for which bacteria?
staphylococcus
What is needed in a selective medium to analyse a fecal specimen
- bile
- bacteria in intestines
Define resolving power.
- ability to show detail
- blur one and focus on another
What do we call the image that the objective lens magnifies?
real image
How do you calculate total magnification?
objective power x ocular power
What would you see if you used a dark field microscope?
- brightly illuminated live specimens
- dark background
What does an electron microscope use to magnify specimens?
- use electrons for imaging
- do not use light
Which microscope would achieve the greatest resolution and highest magnification?
electron microscope
What would you see if you used a phase-contrast microscope?
intracellular structures
What is the most widely used microscope?
light microscope
What is chocolate agar?
- medium used for growing fastidious bacteria
- contains sheep blood
How does a scanning electron microscope work?
- uses electrons while scanning back and forth over metal coated specimen 
- produce 3D image
How does a fluorescence microscope work?
- UV light radiation source
- uses dyes (acridine and fluorescein)
- diagnose certain infections
- type of compound microscope
Why would you prepare a specimen using the hanging drop method?
observation of motility
Why do we stain cells?
add contrast to see cells better
Give 3 examples of differential stains.
- gram
- acid-fast
- endospore
What are basic dyes attracted to?
acidic components of cells
What is simple staining?
One dye used to see shape and size
How would specimens appear under the microscope?
specimen will come out in one colour
What is a complex media?
nutrient rich that are chemically undefined
Give 3 examples of complex media.
- TSA (trypticase soy agar)
- brain-heart infusion
- yeast 
- nutrient agar and broth
What are fastidious bacteria?
bacterium that needs specific nutrients in medium to grow
What type of media is used to grow different types of staphylococcus?
differential
What type of media would you use to grow only staphylococci?
selective
Give some examples of basic dye.
- methylene blue
- crystal violet
- fuchsin
- safranin
- malachite green
SIM (Sulfur Indole Motility) would be used to help you determine what of your specific?
movement (motility)
Is agar a source of nutrition for bacteria?
- no
- framework to hold nutrients for bacteria
Why would you use Sabouraud's agar?
isolate fungi
Why would you use oil immersion?
- increasing resolving power
- clearing sight of specimen