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Paleontology
Study of the history of life and ancient environments
Fossil
Any trace of an organism that lived in the past older than 12.5kya
Applications of studying fossils
Biostrat, biogeography, paleoclimate, paleoenvironment, long-term eco and evo change, modern biodiversity issues, and fossil fuel economics
Geologic timescale
system of categorizing time in geologic record, dates continually refined
Taphonomy
study of how organisms fossilize; all processes between death and discovery
Unaltered remains - soft parts
Freezing or preservation in amber usually
Unaltered remains - hard parts
tar pits (beetles, vertebrates) or shallow marine environments (shells) usually
Permineralization
pore spaces are filled via precipitation of silica, phosphate, or pyrite; retains fine detail; common for wood and bone, sometimes shell
Recrystallization
skeletal material subjected to increased temperature and pressure converts to more stable form; destroys fine detail; aragonite to calcite, amorphous silica to quartz; common for shells
Silicification
original material replaced by silica; retains fine detail; common for shells
Pyritization
original material replaced by pyrite; retains fine detail; common for shells
Mold
composed entirely of sediment; no original material; common for shells; a negative (outside, think pottery mold)
Cast
composed entirely of sediment; no original material; common for shells; a positive (think product of putting something in a mold)
Carbonization
soft parts preserved as carbon films through distillation under heat and pressure; common for leaves, sometimes insects
Altered v. unaltered
altered = denser, not original color
Aragonite
Fairly unstable, often dissolves or recrystallizes, all gastropods, some bivalves, corals, bryozoans, sponges, and algae
Calcite
More stable, brachiopods, some bivalves, corals, bryozoans, sponges, algae, trilobites, & echinoderms
Silica
Easy to distinguish, some sponges and radiolarians, common replacement mineral
Pyrite
easy to distinguish, replacement mineral only
Cellulose
found in higher plants, algae
Calcium phosphate/apatite
found in vertebrates, brachiopods, arthropods
Best chances for preservation
Mineralized skeleton, large skeletal elements, thick/dense skeletal elements, many skeletal elements, life habit/environment that increases chance of burial and decreases chance of scavenging/decay, large population size, broad geographic range, long stratigraphic range
Controls on decay
supply of oxygen (more = faster), temperature (higher = faster), pH (neutral = faster), nature of organic C (more volatile = faster)
Lagerstatten
THE MOTHER LODE; often preserve soft parts, muscles, chitin, cell impressions, color patterns; often anoxic environments or really fast deposition to get beyond the TAZ quickly
Early mineralization of soft tissues
Can happen via pyrite, phosphate, carbonate, and depends on salinity, rate of burial, and organic content; deep lagoon and sea environments have lots of sulfates for pyritization; carbonization requires high orgo content and burial rate, in low salinity creates siderite coating and and high creates calcite coating; phosphatization requires high orgo content and low burial b/c happening pre-burial
Environments of exceptional preservation: concentration
gathering together of remains by sediment transport and sorting
Environment of exceptional preservation: conservation
Fossilization of remains without scavenging, decay, or diagenesis
Taphonomically active zone
area in sediment that is below the depth of wave action and bioturbation; organisms here are more likely to be preserved
Lagerstattens: Burgess Shale
Mid Cambrian in British Columbia, one of the oldest, submarine landslide = rapid burial in anoxic environment, small organisms that are much more complex than expected, early molluscs, echinoderms, wiwaxia, anomelocaris (1st multicellular predator), hallucenigenia
Lagerstattens: Mazon Creek
Pennsylvanian in Illinois, brackish/freshwater estuary, sedimentary concretions with OM trapped in between, fernsm crayfish, clams, worms, crabs, carbonization, tully monster
Lagerstattens: Solnhofen
Upper Jurassic in Germany, shrimp, horseshoe crabs, fish, starfish, jellyfish, shallow marine shelf, archaeopteryx
Lagerstattens: Florissant
Upper Eocene in Colorado, deep lakes, fine sed, leaves, flowers, fishies, insects, arachnids
Relative Age Dating
Age based on relative position, most sed rocks and fossils
Absolute age dating
actual age based on radiometric dating; can only be used for fossils back to 50kya
Biostratigraphy
Branch of stratigraphy that focuses on correlating and assigning relative ages of rock strata using the fossil assemblages; often linked to absolute dates via volcanic ash and igneous intrusions or basalt
Faunal Succession
fossils often occur in repeatable, predictable order vertically, this order can be used to correlate layers across a region
Index fossils
Abundant, evolves quickly/short duration, wide geographic range, easy to ID, good preservation
Biozones
Basic units of biostrat; taxon range, interval, assemblage, or acme
Signor-Lipps Effect
The last occurrence of a taxon is unlikely = true extinctions, all taxon ranges are artificially truncated, common taxa have shorter gaps between occurrences
Confidence intervals
use the distribution of gaps in taxon occurrence to calculate around FO and LO; larger gaps = larger uncertainty in FO and FO
Paleobiogeography
Study of the geographic distribution of fossil organisms
Ecological biogeography
Study of modern biogeography based on climatic and ecological factors
Historical biogeography
Study relating modern distributions of organisms to geological events
Quantifying biogeography
Metrics like dice, jaccard, simple matching, and simpson coefficients; use # of taxa in common, # of taxa in each individual sample, # taxa absent from both samples
Fossils and tectonics: timing
provide critical age constraints; focuses on timing, not reset by thermal or tectonic events like radiometric dates are; ex. separation of the scotland highland border complex from the precambrian dalradian supergroup based on early ordovician fossils
Fossils and tectonics: origin of exotic blocks of crust
when >95% of peeps say accretion has taken place; where big chunks come from
Exotic terranes: Noah’s Ark
Brings species to a new area alive
Exotic terranes: Viking funeral ship
brings to fossil record of extinct organisms to a new area
Fossils and tectonics: finite strain
describe how rocks respond to tectonic forces and other forms of deformation; stress = force per unit area acting on a rock; strain = resulting deformation or change in shape of the rock; can quantify the magnitude and direction of strain
Fossils and tectonics: paleothermometer
Temperature increase during burial; conodonts, graptolites, acritarchs, pollen change color due to the burning of carbon
Latitudinal diversity gradient
higher diversity in the tropics; cradle (more origination) or museum (less extinction)?
Geobiology
explores interactions between organisms and the physical/chemical environment on earth and elsewhere
Biological approaches to paleoenv and paleoclimatic reconstruction
relies on environmental tolerances of modern species, usually applied to congeneric species, back to upper Cenozoic
Paleobiogeochemical approaches to paleoenv and paleoclimatic reconstruction
relies on stable isotope content recorded in fossil hard parts, can be applied to almost any organisms, from any time interval; helpful because it doesn’t assume env tolerances are constant through time
Bio approaches: temperature proxies
Coral reefs (limited to tropics), amphibians (tropical to temperate), leaf margin shape, planktonic forams (varies according to coiling)
Bio approaches: oxygen proxies
increasing O2 → brittle stars & marine worms, corals, cephalopods
Bio approaches: salinity proxies
increasing salinity → freshwater mollusks, brackish mollusks, marine mollusks, coral/echinoderms, brine shrimp; ostracods, some mollusks, and diatoms are variable
Paleobiogeochemical approaches: oxygen isoptopes
more delta O18 = more O18 = lower temp because of ice volume (preferential evap of O16); useful for dinosaur warm-bloodedness, timing of pleistocene glaciations, measures of global warming, Milankovitch forcing
Paleobiogeochemical approaches: annual ocean temps
seasonality recorded in bivalve shells, periods of stop and go growth and delta O18
Paleobiogeochemical approaches: carbon isotopes
more OM = more 12C, less productivity = less delta C13; applications for identifying hydrothermal vent communities, tracking grasslands, measuring productivity through time
Paleoecology
study of relationships between organisms and their environment via the fossil record; contributes to understanding of modern ecological processes and contributes to reconstructing paleoenvironments
Community
formed by interactions among populations of living organisms at a a particular time
Quantifying communities
Rarefaction curves (species richness), # of individuals in each taxon (raw, rank, % abundance), # of individuals between taxa (evennness), density, spatial dist (uniform, random, clumped)
Examples of fossilized behavior
Symbiosis (crinoids & gastropods, inoceramids & fish), reproduction (crepidula fornicata), predation
Competition
interactions between organisms striving for the same resources (food, substrate, mates, etc.), can result in competitive exclusion or niche partitioning
Succession
regular changes that take place in a community as it becomes established and matures to a stable endpoint
Evolutionary paeloecology
study of ecological phenomena that operate at long timescales
Escalation
Evolutionary arms races thought to occur between predators and prey; example Mesozoic marine revolution - rapid adaptation to shell-crushing and drilling predation in benthic organisms throughout the Mesozoic
Offense and defense
Examples of offense - combo of rasping tongue and acidic spit in gastropods
Examples of defense - spines, apertural teeth, thickened shells, ribs, burrowing, boring, swimming
Evidence of predation - peeling, drilling, chipping
Evolution
Organisms have changed through time and are related by descent from a common ancestor ; descent with modification
Charles Darwin & On the Origin of Species
Provided a mechanism for the pattern of evolution (natural selection) and overwhelming evidence of evolution
Darwin’s Principles of Natural Selection
Individuals within species vary
Some of these variations are passed on to offpsring
In every generation, more offspring are produced than survive
The survival and reproduction of individuals are not random. Individuals who survive and reproduce the most are those with the most favorable variations
Questions posed by evolutionary biology
How does populations change through time in response to environmental change?
How do new species arise?
Microevolution
Small-scale change, usually below species level
Macroevolution
Large-scale change, usually above species level
Phyletic Gradualism
gradual transformation from one species to the next
Punctuated Equilibrium
species change very rapidly during episodes of speciation, then remain stable for long periods of time between speciation events
Direct evidence for change through time
Trilobite rib # increases through time, Chesapecten shape concavity and # of ribs
Direct evidence for transitional forms
Archaeopteryx and ambulocetus
Species selection
analogous to natural selection, but acts on species instead of individuals; species survive because they possess irreducible characters that give them an evolutionary advantage (size of range, sexual dimorphism, etc.)
Tetrapod evolution
Transition from water to land, evolved from fish, many transitional fossils with fish and tetrapod characteristics, loss of gills and scales, gain of a sturdy ribcage, lungs, a neck, and hip bones, decrease in the number of digits
Origin of flight
Evolved more than 30x in vertebrates (including gliding and powered); pterosaurs in the jurassic, bats in the eocene
Arboreal Theory
From the trees down; vertebrate flight most likely to originate via gliding stage, scarcity of arboreal dinos
Cursorial theory
Dinos are ground-dwelling, highly cursorial organisms, aerodynamically difficult to evolve flight from the ground
Systematics
Scientific study of the kinds and diversity of organisms and relationships among them
Phylogeny
evolutionary history of a group; can be visualized in a tree
Evolutionary tree
Phylogenetic tree + rates of evolution (time) + ancestors
Characters (traits)
Discrete (categorical, qualitative, composed of states) or continuous (quantitative)
Convergent character states
state that arises independently in 2 evolutionary lineages, e.g. wings
Homologous character
state that arises in 2 lineages because these lineages share a common ancestor possessing this character, e.g. vertebrate limbs
Cladistics
Relationships based on shared, derived